Wall clock time and date at job start Tue Mar 31 2020 05:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47046 * 2 1 4 4 C 1.52998 * 109.47233 * 120.00362 * 2 1 3 5 5 C 1.50699 * 109.47025 * 294.99829 * 4 2 1 6 6 H 1.07991 * 120.00152 * 0.02562 * 5 4 2 7 7 C 1.37883 * 119.99572 * 179.97438 * 5 4 2 8 8 N 1.31506 * 120.00229 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99528 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47265 * 60.00417 * 9 7 5 11 11 H 1.48498 * 109.46947 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47428 * 300.00067 * 9 7 5 13 13 C 1.53004 * 109.46855 * 240.00296 * 2 1 3 14 14 N 1.46901 * 109.46902 * 65.00107 * 13 2 1 15 15 C 1.46891 * 111.00317 * 66.04539 * 14 13 2 16 16 C 1.46904 * 110.99781 * 189.99909 * 14 13 2 17 17 C 1.50701 * 109.46998 * 169.99697 * 16 14 13 18 18 N 1.30469 * 125.64491 * 269.99870 * 17 16 14 19 19 C 1.34169 * 109.26708 * 180.02562 * 18 17 16 20 20 C 1.34794 * 108.01578 * 0.02562 * 19 18 17 21 21 Cl 1.73596 * 126.59558 * 180.02562 * 20 19 18 22 22 N 1.35166 * 125.64206 * 90.00083 * 17 16 14 23 23 C 1.46499 * 126.40019 * 0.02562 * 22 17 16 24 24 H 1.09001 * 109.46705 * 299.99452 * 1 2 3 25 25 H 1.08994 * 109.47416 * 59.99571 * 1 2 3 26 26 H 1.09001 * 109.47046 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47150 * 55.00255 * 4 2 1 28 28 H 1.09004 * 109.46958 * 174.99980 * 4 2 1 29 29 H 0.97002 * 120.00371 * 179.97438 * 8 7 5 30 30 H 1.08996 * 109.47381 * 304.99765 * 13 2 1 31 31 H 1.09005 * 109.47092 * 184.99672 * 13 2 1 32 32 H 1.09000 * 109.47536 * 183.95011 * 15 14 13 33 33 H 1.09006 * 109.47310 * 303.95284 * 15 14 13 34 34 H 1.08998 * 109.47397 * 63.95305 * 15 14 13 35 35 H 1.09002 * 109.46798 * 49.99832 * 16 14 13 36 36 H 1.09000 * 109.47215 * 289.99664 * 16 14 13 37 37 H 1.08000 * 125.98707 * 180.26031 * 19 18 17 38 38 H 1.09006 * 109.46775 * 269.97682 * 23 22 17 39 39 H 1.09004 * 109.47219 * 29.97376 * 23 22 17 40 40 H 1.08990 * 109.47239 * 149.97459 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0569 2.4765 6 1 1.0801 0.9740 2.3757 7 6 1.9925 -0.4025 3.7283 8 7 2.6756 -1.5195 3.8510 9 14 1.4990 0.5626 5.2496 10 1 0.0190 0.6702 5.3091 11 1 1.9928 -0.1382 6.4621 12 1 2.0921 1.9225 5.1872 13 6 2.0400 -0.7212 -1.2493 14 7 1.6513 0.0376 -2.4456 15 6 2.3340 1.3375 -2.4894 16 6 1.9123 -0.7355 -3.6672 17 6 1.2828 -0.0395 -4.8463 18 7 0.0702 -0.2353 -5.2863 19 6 -0.1480 0.5540 -6.3490 20 6 0.9735 1.2663 -6.5766 21 17 1.2189 2.4363 -7.8354 22 7 1.8810 0.8910 -5.6231 23 6 3.2462 1.4009 -5.4737 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6055 -1.7199 1.2950 28 1 3.1264 -0.7995 1.2055 29 1 2.9229 -1.8425 4.7316 30 1 1.6054 -1.7197 -1.2953 31 1 3.1263 -0.7994 -1.2057 32 1 1.9759 1.9073 -3.3469 33 1 2.1239 1.8893 -1.5731 34 1 3.4087 1.1806 -2.5807 35 1 1.4856 -1.7332 -3.5639 36 1 2.9881 -0.8149 -3.8241 37 1 -1.0632 0.6116 -6.9195 38 1 3.2396 2.2691 -4.8145 39 1 3.8794 0.6241 -5.0450 40 1 3.6353 1.6890 -6.4501 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877168538.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:03 Heat of formation + Delta-G solvation = 33.867988 kcal Electronic energy + Delta-G solvation = -20403.333717 eV Core-core repulsion = 17279.273814 eV Total energy + Delta-G solvation = -3124.059903 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.130 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.26838 -39.17463 -37.79888 -36.21613 -35.13380 -34.05398 -31.29233 -28.96489 -28.67556 -27.82839 -27.31656 -25.43487 -23.29268 -22.52243 -20.77398 -20.47720 -18.51728 -18.32564 -17.52605 -16.68330 -16.46236 -16.07176 -15.94782 -15.58368 -15.02916 -14.80421 -14.31030 -14.15589 -14.14645 -13.75830 -13.56003 -13.28769 -13.16378 -12.97496 -12.74038 -12.69194 -12.57043 -12.50308 -12.43083 -12.18749 -11.98878 -11.35152 -11.08250 -11.03279 -10.91683 -10.71319 -10.49679 -9.45233 -9.20990 -8.15097 -6.23402 0.53781 0.72154 1.41460 1.43752 1.51291 1.85924 1.92614 2.43814 3.01934 3.18532 3.34803 3.75113 3.84488 4.05922 4.17064 4.28499 4.30013 4.39663 4.45669 4.48847 4.56424 4.59706 4.69459 4.91094 4.92546 4.97071 5.01458 5.10145 5.31721 5.45108 5.49610 5.53194 5.57947 5.82778 5.89188 5.92673 6.05592 6.10475 6.34821 6.92423 6.92830 7.44511 8.96578 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.038840 B = 0.002915 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.734713 B = 9602.876531 C = 9640.333519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.071 4.071 3 H 0.056 0.944 4 C 0.034 3.966 5 C -0.529 4.529 6 H 0.058 0.942 7 C 0.000 4.000 8 N -0.934 5.934 9 Si 0.957 3.043 10 H -0.270 1.270 11 H -0.285 1.285 12 H -0.268 1.268 13 C 0.075 3.925 14 N -0.540 5.540 15 C 0.021 3.979 16 C 0.140 3.860 17 C 0.234 3.766 18 N -0.501 5.501 19 C -0.010 4.010 20 C 0.008 3.992 21 Cl 0.006 6.994 22 N -0.448 5.448 23 C 0.054 3.946 24 H 0.035 0.965 25 H 0.057 0.943 26 H 0.036 0.964 27 H -0.009 1.009 28 H -0.009 1.009 29 H 0.262 0.738 30 H 0.072 0.928 31 H 0.036 0.964 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.043 0.957 35 H 0.106 0.894 36 H 0.075 0.925 37 H 0.193 0.807 38 H 0.092 0.908 39 H 0.107 0.893 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.771 6.944 -23.756 24.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.090 4.090 3 H 0.074 0.926 4 C -0.003 4.003 5 C -0.567 4.567 6 H 0.076 0.924 7 C -0.197 4.197 8 N -0.575 5.575 9 Si 0.782 3.218 10 H -0.195 1.195 11 H -0.210 1.210 12 H -0.193 1.193 13 C -0.052 4.052 14 N -0.265 5.265 15 C -0.127 4.127 16 C 0.011 3.989 17 C -0.029 4.029 18 N -0.220 5.220 19 C -0.161 4.161 20 C -0.133 4.133 21 Cl 0.034 6.966 22 N -0.133 5.133 23 C -0.087 4.087 24 H 0.054 0.946 25 H 0.076 0.924 26 H 0.055 0.945 27 H 0.009 0.991 28 H 0.009 0.991 29 H 0.070 0.930 30 H 0.091 0.909 31 H 0.054 0.946 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.124 0.876 36 H 0.093 0.907 37 H 0.210 0.790 38 H 0.111 0.889 39 H 0.125 0.875 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.972 6.540 -23.372 24.289 hybrid contribution 1.233 0.795 0.524 1.558 sum 2.205 7.336 -22.848 24.098 Atomic orbital electron populations 1.21461 0.95247 1.00309 0.99948 1.21031 0.96223 0.98649 0.93087 0.92586 1.18995 0.94287 0.94645 0.92392 1.21611 1.34343 1.08556 0.92197 0.92378 1.25890 0.95326 0.96063 1.02450 1.70076 1.40282 1.22835 1.24284 0.85628 0.78851 0.78883 0.78466 1.19499 1.21029 1.19252 1.22062 0.97701 0.96989 0.88441 1.61826 1.59235 1.04383 1.01073 1.22578 0.96560 0.91071 1.02514 1.20453 0.98387 0.96392 0.83653 1.23073 0.89914 0.93549 0.96328 1.70387 1.14734 1.25088 1.11810 1.22532 0.98581 0.97040 0.97907 1.21856 0.93234 1.02998 0.95253 1.98379 1.96926 1.54942 1.46334 1.45329 1.13784 1.31444 1.22770 1.22549 0.78358 1.02120 1.05685 0.94616 0.92373 0.94507 0.99056 0.99110 0.92961 0.90927 0.94578 0.91729 0.91710 0.93826 0.87613 0.90746 0.78995 0.88919 0.87478 0.87874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.41 8.89 71.98 0.64 -3.77 16 2 C -0.07 -2.83 2.26 -10.79 -0.02 -2.86 16 3 H 0.06 2.24 6.26 -2.39 -0.01 2.22 16 4 C 0.03 1.77 4.45 29.85 0.13 1.90 16 5 C -0.53 -29.67 8.41 25.60 0.22 -29.46 16 6 H 0.06 3.16 7.05 -2.92 -0.02 3.14 16 7 C 0.00 0.00 5.46 84.66 0.46 0.47 16 8 N -0.93 -56.59 13.29 21.45 0.28 -56.30 16 9 Si 0.96 44.36 29.54 68.60 2.03 46.39 16 10 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 12 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 13 C 0.08 2.41 4.35 86.30 0.38 2.78 16 14 N -0.54 -14.62 4.21 -927.04 -3.90 -18.52 16 15 C 0.02 0.48 8.11 127.69 1.04 1.52 16 16 C 0.14 3.14 5.28 85.56 0.45 3.60 16 17 C 0.23 5.62 6.55 138.10 0.90 6.52 16 18 N -0.50 -14.12 11.25 -187.94 -2.11 -16.23 16 19 C -0.01 -0.24 11.86 83.54 0.99 0.75 16 20 C 0.01 0.16 7.49 83.12 0.62 0.78 16 21 Cl 0.01 0.09 28.93 -2.72 -0.08 0.02 16 22 N -0.45 -8.61 2.77 -526.51 -1.46 -10.07 16 23 C 0.05 0.61 9.51 127.77 1.22 1.83 16 24 H 0.03 1.49 6.95 -2.39 -0.02 1.47 16 25 H 0.06 2.09 7.75 -2.39 -0.02 2.07 16 26 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 27 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 28 H -0.01 -0.52 8.14 -2.38 -0.02 -0.54 16 29 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 30 H 0.07 2.34 7.93 -2.39 -0.02 2.32 16 31 H 0.04 1.12 8.12 -2.38 -0.02 1.10 16 32 H 0.06 1.41 5.34 -2.39 -0.01 1.39 16 33 H 0.06 1.75 6.21 -2.38 -0.01 1.74 16 34 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.11 2.45 7.93 -2.39 -0.02 2.43 16 36 H 0.07 1.28 7.05 -2.39 -0.02 1.26 16 37 H 0.19 3.55 8.06 -2.91 -0.02 3.53 16 38 H 0.09 0.97 6.83 -2.38 -0.02 0.95 16 39 H 0.11 0.93 7.05 -2.38 -0.02 0.91 16 40 H 0.10 0.87 7.92 -2.39 -0.02 0.85 16 Total: -1.00 -67.54 335.25 2.80 -64.74 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: 1.02 Total: 5.93 kcal Atomic # 6 Polarization: -22.97 SS G_CDS: 7.02 Total: -15.94 kcal Atomic # 7 Polarization: -93.94 SS G_CDS: -7.19 Total: -101.13 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Atomic # 17 Polarization: 0.09 SS G_CDS: -0.08 Total: 0.02 kcal Total: -67.54 2.80 -64.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877168538.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.609 kcal (2) G-P(sol) polarization free energy of solvation -67.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds