Wall clock time and date at job start Tue Mar 31 2020 05:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47441 * 2 1 4 4 C 1.53000 * 109.47137 * 239.99871 * 2 1 3 5 5 C 1.50703 * 109.47142 * 64.99840 * 4 2 1 6 6 H 1.07999 * 119.99959 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00263 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99840 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00217 * 180.02562 * 7 5 4 10 10 H 1.48510 * 109.47124 * 60.00204 * 9 7 5 11 11 H 1.48501 * 109.47261 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47412 * 300.00577 * 9 7 5 13 13 C 1.53003 * 109.46881 * 120.00169 * 2 1 3 14 14 N 1.46898 * 109.46766 * 183.14947 * 13 2 1 15 15 C 1.46897 * 111.00309 * 71.95599 * 14 13 2 16 16 C 1.46904 * 110.99872 * 195.90986 * 14 13 2 17 17 C 1.50695 * 109.47289 * 170.00191 * 16 14 13 18 18 N 1.30471 * 125.64628 * 90.02220 * 17 16 14 19 19 C 1.34163 * 109.27066 * 180.02562 * 18 17 16 20 20 C 1.34801 * 108.01747 * 359.97438 * 19 18 17 21 21 Cl 1.73591 * 126.60138 * 179.74047 * 20 19 18 22 22 N 1.35160 * 125.64331 * 270.02402 * 17 16 14 23 23 C 1.46499 * 126.39967 * 0.03284 * 22 17 16 24 24 H 1.08999 * 109.46852 * 294.45578 * 1 2 3 25 25 H 1.09004 * 109.46991 * 54.45172 * 1 2 3 26 26 H 1.09001 * 109.47339 * 174.45270 * 1 2 3 27 27 H 1.08998 * 109.47042 * 185.00346 * 4 2 1 28 28 H 1.08999 * 109.46987 * 305.00373 * 4 2 1 29 29 H 0.96994 * 119.99792 * 179.97438 * 8 7 5 30 30 H 1.08992 * 109.47060 * 63.14960 * 13 2 1 31 31 H 1.09000 * 109.47046 * 303.14553 * 13 2 1 32 32 H 1.08994 * 109.47529 * 185.83404 * 15 14 13 33 33 H 1.08999 * 109.47132 * 305.83677 * 15 14 13 34 34 H 1.08998 * 109.47278 * 65.83750 * 15 14 13 35 35 H 1.08997 * 109.47344 * 49.99786 * 16 14 13 36 36 H 1.09009 * 109.46968 * 289.99924 * 16 14 13 37 37 H 1.07996 * 125.99622 * 180.02562 * 19 18 17 38 38 H 1.08999 * 109.47751 * 269.98543 * 23 22 17 39 39 H 1.09000 * 109.47376 * 29.98692 * 23 22 17 40 40 H 1.09009 * 109.47336 * 149.98224 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4766 6 1 1.0806 0.9745 -2.3757 7 6 1.9932 -0.4017 -3.7283 8 7 2.6764 -1.5188 -3.8512 9 14 1.4996 0.5633 -5.2496 10 1 2.0918 1.9237 -5.1866 11 1 1.9945 -0.1368 -6.4621 12 1 0.0197 0.6700 -5.3096 13 6 2.0400 -0.7213 1.2493 14 7 3.5070 -0.6557 1.2879 15 6 3.9650 0.7024 1.6095 16 6 4.0528 -1.6342 2.2380 17 6 5.5489 -1.7123 2.0749 18 7 6.4225 -0.9846 2.7148 19 6 7.6580 -1.3246 2.3174 20 6 7.5454 -2.3015 1.3954 21 17 8.8460 -3.0901 0.5588 22 7 6.2077 -2.5477 1.2413 23 6 5.6032 -3.5320 0.3403 24 1 -0.3633 0.4254 0.9355 25 1 -0.3633 0.5975 -0.8362 26 1 -0.3634 -1.0228 -0.0993 27 1 3.1263 -0.7995 -1.2055 28 1 1.6053 -1.7198 -1.2951 29 1 2.9236 -1.8417 -4.7317 30 1 1.7235 -1.7639 1.2214 31 1 1.6313 -0.2411 2.1383 32 1 5.0511 0.7480 1.5302 33 1 3.5197 1.4110 0.9111 34 1 3.6641 0.9562 2.6259 35 1 3.6145 -2.6131 2.0436 36 1 3.8140 -1.3248 3.2556 37 1 8.5811 -0.8921 2.6741 38 1 5.4971 -4.4840 0.8605 39 1 4.6215 -3.1799 0.0235 40 1 6.2410 -3.6647 -0.5337 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877168539.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:06 Heat of formation + Delta-G solvation = 50.247844 kcal Electronic energy + Delta-G solvation = -20826.079689 eV Core-core repulsion = 17702.730071 eV Total energy + Delta-G solvation = -3123.349619 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.130 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.13758 -37.75233 -36.77153 -34.41097 -34.03368 -32.10156 -30.08164 -27.28670 -27.14238 -26.72939 -26.04516 -23.25265 -21.93942 -21.47549 -19.75215 -18.81237 -17.19781 -16.41503 -16.13165 -15.41331 -14.99285 -14.59487 -14.57606 -14.21392 -13.78284 -13.39441 -12.98077 -12.75596 -12.50811 -12.42538 -12.21358 -11.90914 -11.82333 -11.53071 -11.44134 -11.35930 -11.14718 -10.88252 -10.82432 -10.38407 -10.21808 -10.02384 -9.66186 -9.60606 -9.10330 -8.90338 -8.34541 -8.26093 -7.90471 -5.92717 -3.92202 1.60948 1.85038 2.93217 3.00313 3.35947 3.40459 3.43022 4.21601 4.51386 4.54944 4.83265 4.88700 5.19492 5.35874 5.40826 5.43765 5.51127 5.57953 5.67379 5.72078 5.90747 5.97405 6.04286 6.16373 6.23578 6.34502 6.36144 6.47599 6.53657 6.94819 6.97552 7.03223 7.25394 7.33237 7.46695 7.80671 7.97344 8.02308 8.15260 8.54050 9.14837 9.70167 11.18565 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.015353 B = 0.004771 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.300358 B = 5867.793184 C = 7111.063304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.084 4.084 3 H 0.057 0.943 4 C 0.038 3.962 5 C -0.513 4.513 6 H 0.051 0.949 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.885 3.115 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.065 3.935 14 N -0.527 5.527 15 C 0.029 3.971 16 C 0.136 3.864 17 C 0.245 3.755 18 N -0.482 5.482 19 C 0.003 3.997 20 C 0.010 3.990 21 Cl -0.015 7.015 22 N -0.437 5.437 23 C 0.064 3.936 24 H 0.028 0.972 25 H 0.061 0.939 26 H 0.046 0.954 27 H 0.031 0.969 28 H 0.008 0.992 29 H 0.258 0.742 30 H 0.068 0.932 31 H 0.024 0.976 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.022 0.978 35 H 0.089 0.911 36 H 0.065 0.935 37 H 0.177 0.823 38 H 0.077 0.923 39 H 0.109 0.891 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.738 -4.018 12.645 14.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.103 4.103 3 H 0.075 0.925 4 C 0.001 3.999 5 C -0.551 4.551 6 H 0.069 0.931 7 C -0.143 4.143 8 N -0.537 5.537 9 Si 0.713 3.287 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.204 1.204 13 C -0.062 4.062 14 N -0.251 5.251 15 C -0.119 4.119 16 C 0.007 3.993 17 C -0.018 4.018 18 N -0.201 5.201 19 C -0.148 4.148 20 C -0.132 4.132 21 Cl 0.013 6.987 22 N -0.120 5.120 23 C -0.078 4.078 24 H 0.048 0.952 25 H 0.080 0.920 26 H 0.065 0.935 27 H 0.049 0.951 28 H 0.026 0.974 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.042 0.958 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.040 0.960 35 H 0.108 0.892 36 H 0.083 0.917 37 H 0.194 0.806 38 H 0.095 0.905 39 H 0.128 0.872 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.839 -3.855 12.440 14.710 hybrid contribution -0.051 -0.092 -1.058 1.063 sum 6.788 -3.948 11.382 13.828 Atomic orbital electron populations 1.21688 0.96303 1.01237 0.99681 1.21239 0.94245 0.99396 0.95445 0.92472 1.19027 0.97227 0.94404 0.89285 1.21285 1.34288 1.08153 0.91397 0.93070 1.24960 0.95443 0.95078 0.98835 1.69944 1.39275 1.21265 1.23166 0.86780 0.78792 0.80257 0.82854 1.20417 1.21466 1.20421 1.22297 0.85010 1.00955 0.97958 1.61876 1.10065 1.05293 1.47902 1.22393 1.01458 0.89486 0.98527 1.20423 0.84433 0.98319 0.96166 1.22986 0.95972 0.90990 0.91815 1.70392 0.98926 1.24515 1.26296 1.22079 0.96816 0.97479 0.98410 1.21750 0.81777 1.04429 1.05201 1.98366 1.42767 1.80011 1.77507 1.45083 1.04691 1.30330 1.31925 1.22252 1.01728 0.90635 0.93176 0.95250 0.92032 0.93510 0.95069 0.97372 0.93279 0.91393 0.95777 0.91331 0.90834 0.95985 0.89229 0.91708 0.80615 0.90467 0.87218 0.89275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.36 8.91 37.16 0.33 -2.03 16 2 C -0.08 -1.65 2.34 -90.62 -0.21 -1.86 16 3 H 0.06 1.16 6.55 -51.93 -0.34 0.82 16 4 C 0.04 0.93 4.38 -27.88 -0.12 0.80 16 5 C -0.51 -14.13 8.48 -34.44 -0.29 -14.43 16 6 H 0.05 1.38 7.06 -52.49 -0.37 1.01 16 7 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 8 N -0.90 -26.46 13.29 55.43 0.74 -25.73 16 9 Si 0.88 21.66 29.54 -169.99 -5.02 16.64 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 C 0.06 1.04 4.38 -3.82 -0.02 1.03 16 14 N -0.53 -8.52 4.00 -244.38 -0.98 -9.50 16 15 C 0.03 0.47 9.18 60.06 0.55 1.02 16 16 C 0.14 1.87 5.05 -4.98 -0.03 1.84 16 17 C 0.25 3.67 6.54 -155.33 -1.02 2.66 16 18 N -0.48 -7.53 10.56 -10.76 -0.11 -7.64 16 19 C 0.00 0.04 11.86 -17.75 -0.21 -0.17 16 20 C 0.01 0.14 7.49 -16.52 -0.12 0.01 16 21 Cl -0.01 -0.17 28.93 -51.86 -1.50 -1.67 16 22 N -0.44 -6.25 3.16 -117.77 -0.37 -6.62 16 23 C 0.06 0.79 10.66 59.85 0.64 1.43 16 24 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 1.19 7.12 -51.93 -0.37 0.82 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.03 0.84 7.56 -51.93 -0.39 0.44 16 28 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 30 H 0.07 1.04 7.81 -51.93 -0.41 0.64 16 31 H 0.02 0.35 8.05 -51.93 -0.42 -0.07 16 32 H 0.07 1.16 6.82 -51.93 -0.35 0.80 16 33 H 0.07 1.23 6.46 -51.93 -0.34 0.90 16 34 H 0.02 0.31 8.13 -51.93 -0.42 -0.11 16 35 H 0.09 1.08 7.43 -51.93 -0.39 0.69 16 36 H 0.06 0.82 8.11 -51.92 -0.42 0.40 16 37 H 0.18 1.97 8.06 -52.49 -0.42 1.55 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.11 1.52 7.66 -51.93 -0.40 1.12 16 40 H 0.09 1.09 7.92 -51.92 -0.41 0.68 16 LS Contribution 341.13 15.07 5.14 5.14 Total: -1.00 -30.69 341.13 -8.97 -39.66 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -6.27 Total: -2.11 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: -0.59 Total: -8.17 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: -0.73 Total: -49.49 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -1.50 Total: -1.67 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.69 -8.97 -39.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877168539.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.910 kcal (2) G-P(sol) polarization free energy of solvation -30.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds