Wall clock time and date at job start Tue Mar 31 2020 05:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47441 * 2 1 4 4 C 1.53000 * 109.47137 * 239.99871 * 2 1 3 5 5 C 1.50703 * 109.47142 * 64.99840 * 4 2 1 6 6 H 1.07999 * 119.99959 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00263 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99840 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00217 * 180.02562 * 7 5 4 10 10 H 1.48510 * 109.47124 * 60.00204 * 9 7 5 11 11 H 1.48501 * 109.47261 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47412 * 300.00577 * 9 7 5 13 13 C 1.53003 * 109.46881 * 120.00169 * 2 1 3 14 14 N 1.46898 * 109.46766 * 183.14947 * 13 2 1 15 15 C 1.46897 * 111.00309 * 71.95599 * 14 13 2 16 16 C 1.46904 * 110.99872 * 195.90986 * 14 13 2 17 17 C 1.50695 * 109.47289 * 170.00191 * 16 14 13 18 18 N 1.30471 * 125.64628 * 90.02220 * 17 16 14 19 19 C 1.34163 * 109.27066 * 180.02562 * 18 17 16 20 20 C 1.34801 * 108.01747 * 359.97438 * 19 18 17 21 21 Cl 1.73591 * 126.60138 * 179.74047 * 20 19 18 22 22 N 1.35160 * 125.64331 * 270.02402 * 17 16 14 23 23 C 1.46499 * 126.39967 * 0.03284 * 22 17 16 24 24 H 1.08999 * 109.46852 * 294.45578 * 1 2 3 25 25 H 1.09004 * 109.46991 * 54.45172 * 1 2 3 26 26 H 1.09001 * 109.47339 * 174.45270 * 1 2 3 27 27 H 1.08998 * 109.47042 * 185.00346 * 4 2 1 28 28 H 1.08999 * 109.46987 * 305.00373 * 4 2 1 29 29 H 0.96994 * 119.99792 * 179.97438 * 8 7 5 30 30 H 1.08992 * 109.47060 * 63.14960 * 13 2 1 31 31 H 1.09000 * 109.47046 * 303.14553 * 13 2 1 32 32 H 1.08994 * 109.47529 * 185.83404 * 15 14 13 33 33 H 1.08999 * 109.47132 * 305.83677 * 15 14 13 34 34 H 1.08998 * 109.47278 * 65.83750 * 15 14 13 35 35 H 1.08997 * 109.47344 * 49.99786 * 16 14 13 36 36 H 1.09009 * 109.46968 * 289.99924 * 16 14 13 37 37 H 1.07996 * 125.99622 * 180.02562 * 19 18 17 38 38 H 1.08999 * 109.47751 * 269.98543 * 23 22 17 39 39 H 1.09000 * 109.47376 * 29.98692 * 23 22 17 40 40 H 1.09009 * 109.47336 * 149.98224 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4766 6 1 1.0806 0.9745 -2.3757 7 6 1.9932 -0.4017 -3.7283 8 7 2.6764 -1.5188 -3.8512 9 14 1.4996 0.5633 -5.2496 10 1 2.0918 1.9237 -5.1866 11 1 1.9945 -0.1368 -6.4621 12 1 0.0197 0.6700 -5.3096 13 6 2.0400 -0.7213 1.2493 14 7 3.5070 -0.6557 1.2879 15 6 3.9650 0.7024 1.6095 16 6 4.0528 -1.6342 2.2380 17 6 5.5489 -1.7123 2.0749 18 7 6.4225 -0.9846 2.7148 19 6 7.6580 -1.3246 2.3174 20 6 7.5454 -2.3015 1.3954 21 17 8.8460 -3.0901 0.5588 22 7 6.2077 -2.5477 1.2413 23 6 5.6032 -3.5320 0.3403 24 1 -0.3633 0.4254 0.9355 25 1 -0.3633 0.5975 -0.8362 26 1 -0.3634 -1.0228 -0.0993 27 1 3.1263 -0.7995 -1.2055 28 1 1.6053 -1.7198 -1.2951 29 1 2.9236 -1.8417 -4.7317 30 1 1.7235 -1.7639 1.2214 31 1 1.6313 -0.2411 2.1383 32 1 5.0511 0.7480 1.5302 33 1 3.5197 1.4110 0.9111 34 1 3.6641 0.9562 2.6259 35 1 3.6145 -2.6131 2.0436 36 1 3.8140 -1.3248 3.2556 37 1 8.5811 -0.8921 2.6741 38 1 5.4971 -4.4840 0.8605 39 1 4.6215 -3.1799 0.0235 40 1 6.2410 -3.6647 -0.5337 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877168539.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:06 Heat of formation + Delta-G solvation = 32.711947 kcal Electronic energy + Delta-G solvation = -20826.840103 eV Core-core repulsion = 17702.730071 eV Total energy + Delta-G solvation = -3124.110033 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.130 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.21479 -39.07554 -37.78232 -36.05681 -35.10548 -34.06624 -31.25544 -29.03548 -28.37531 -27.96107 -27.27159 -25.08296 -23.36773 -22.54800 -20.85589 -20.38495 -18.45750 -18.24134 -17.34936 -16.65372 -16.44891 -16.16699 -15.81110 -15.50024 -14.95555 -14.84099 -14.25361 -13.98659 -13.94989 -13.72063 -13.54681 -13.45473 -13.00473 -12.96302 -12.75460 -12.65305 -12.59170 -12.50670 -12.42461 -12.20646 -11.92972 -11.38942 -11.13962 -10.87851 -10.87590 -10.68044 -10.42958 -9.42507 -9.11192 -8.09659 -6.15860 0.56456 0.77696 1.40760 1.42230 1.49340 1.85042 1.94765 2.45784 3.08035 3.24000 3.44457 3.78012 3.85032 4.12406 4.29103 4.30974 4.37903 4.41804 4.52715 4.61108 4.63715 4.68078 4.70306 4.84161 4.94951 4.97571 5.07473 5.16576 5.36309 5.46305 5.49871 5.55718 5.69715 5.90828 5.99006 6.06514 6.12213 6.25280 6.42815 6.87760 7.01999 7.50536 9.01137 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.015353 B = 0.004771 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.300358 B = 5867.793184 C = 7111.063304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.079 4.079 3 H 0.047 0.953 4 C 0.051 3.949 5 C -0.528 4.528 6 H 0.052 0.948 7 C 0.003 3.997 8 N -0.929 5.929 9 Si 0.948 3.052 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.268 1.268 13 C 0.075 3.925 14 N -0.550 5.550 15 C 0.039 3.961 16 C 0.141 3.859 17 C 0.232 3.768 18 N -0.501 5.501 19 C -0.007 4.007 20 C 0.001 3.999 21 Cl 0.001 6.999 22 N -0.443 5.443 23 C 0.065 3.935 24 H 0.064 0.936 25 H 0.041 0.959 26 H 0.045 0.955 27 H 0.001 0.999 28 H -0.016 1.016 29 H 0.258 0.742 30 H 0.075 0.925 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.040 0.960 35 H 0.105 0.895 36 H 0.080 0.920 37 H 0.198 0.802 38 H 0.106 0.894 39 H 0.091 0.909 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.233 -3.850 13.495 15.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.098 4.098 3 H 0.066 0.934 4 C 0.014 3.986 5 C -0.567 4.567 6 H 0.070 0.930 7 C -0.194 4.194 8 N -0.570 5.570 9 Si 0.774 3.226 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.193 1.193 13 C -0.053 4.053 14 N -0.275 5.275 15 C -0.109 4.109 16 C 0.012 3.988 17 C -0.031 4.031 18 N -0.221 5.221 19 C -0.157 4.157 20 C -0.140 4.140 21 Cl 0.029 6.971 22 N -0.126 5.126 23 C -0.076 4.076 24 H 0.083 0.917 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.020 0.980 28 H 0.003 0.997 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.058 0.942 35 H 0.123 0.877 36 H 0.098 0.902 37 H 0.215 0.785 38 H 0.124 0.876 39 H 0.110 0.890 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.325 -3.684 13.296 15.178 hybrid contribution 0.168 -0.162 -1.331 1.351 sum 6.493 -3.846 11.965 14.146 Atomic orbital electron populations 1.21607 0.94854 1.01135 1.00743 1.21099 0.95455 0.98487 0.94789 0.93446 1.18812 0.95179 0.93459 0.91188 1.21726 1.33876 1.08337 0.92716 0.92957 1.25780 0.95563 0.96058 1.02027 1.70072 1.40428 1.22761 1.23780 0.85770 0.78892 0.78865 0.79112 1.19907 1.21217 1.19336 1.22128 0.85058 1.01144 0.96921 1.61756 1.10286 1.05804 1.49625 1.22239 1.00309 0.89295 0.99063 1.20477 0.83750 0.98368 0.96250 1.23233 0.96504 0.91229 0.92110 1.70366 0.99661 1.25009 1.27027 1.22517 0.97213 0.97541 0.98447 1.21970 0.82089 1.04601 1.05350 1.98368 1.41894 1.79680 1.77159 1.45258 1.04983 1.30506 1.31903 1.22299 1.00515 0.91440 0.93380 0.91706 0.94014 0.93576 0.98016 0.99715 0.93329 0.90606 0.93070 0.92814 0.92356 0.94155 0.87707 0.90221 0.78495 0.87559 0.89030 0.89472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.31 8.91 71.98 0.64 -3.67 16 2 C -0.08 -3.05 2.34 -10.79 -0.03 -3.07 16 3 H 0.05 1.91 6.55 -2.39 -0.02 1.89 16 4 C 0.05 2.55 4.38 29.85 0.13 2.68 16 5 C -0.53 -29.46 8.48 25.60 0.22 -29.24 16 6 H 0.05 2.84 7.06 -2.91 -0.02 2.82 16 7 C 0.00 0.17 5.46 84.65 0.46 0.63 16 8 N -0.93 -55.80 13.29 21.45 0.28 -55.52 16 9 Si 0.95 44.56 29.54 68.60 2.03 46.58 16 10 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 11 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 12 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 13 C 0.07 2.26 4.38 86.30 0.38 2.64 16 14 N -0.55 -17.32 4.00 -927.07 -3.71 -21.03 16 15 C 0.04 1.21 9.18 127.69 1.17 2.39 16 16 C 0.14 3.65 5.05 85.55 0.43 4.08 16 17 C 0.23 6.78 6.54 138.10 0.90 7.68 16 18 N -0.50 -15.27 10.56 -187.95 -1.99 -17.25 16 19 C -0.01 -0.19 11.86 83.55 0.99 0.81 16 20 C 0.00 0.03 7.49 83.12 0.62 0.66 16 21 Cl 0.00 0.02 28.93 -2.72 -0.08 -0.06 16 22 N -0.44 -12.43 3.16 -526.51 -1.66 -14.09 16 23 C 0.07 1.58 10.66 127.77 1.36 2.94 16 24 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.04 1.57 7.12 -2.38 -0.02 1.55 16 26 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.00 0.08 7.56 -2.39 -0.02 0.06 16 28 H -0.02 -0.85 8.14 -2.39 -0.02 -0.87 16 29 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 30 H 0.08 2.18 7.81 -2.39 -0.02 2.16 16 31 H 0.05 1.31 8.05 -2.39 -0.02 1.29 16 32 H 0.05 1.81 6.82 -2.39 -0.02 1.80 16 33 H 0.06 1.95 6.46 -2.39 -0.02 1.94 16 34 H 0.04 1.08 8.13 -2.39 -0.02 1.06 16 35 H 0.10 2.35 7.43 -2.39 -0.02 2.33 16 36 H 0.08 1.83 8.11 -2.38 -0.02 1.82 16 37 H 0.20 4.19 8.06 -2.91 -0.02 4.17 16 38 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.09 2.58 7.66 -2.39 -0.02 2.56 16 40 H 0.09 2.13 7.92 -2.38 -0.02 2.11 16 Total: -1.00 -65.98 341.13 3.18 -62.80 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: 1.01 Total: 10.05 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: 7.29 Total: -11.49 kcal Atomic # 7 Polarization: -100.82 SS G_CDS: -7.07 Total: -107.89 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 17 Polarization: 0.02 SS G_CDS: -0.08 Total: -0.06 kcal Total: -65.98 3.18 -62.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877168539.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.508 kcal (2) G-P(sol) polarization free energy of solvation -65.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds