Wall clock time and date at job start Tue Mar 31 2020 06:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 120.00291 * 2 1 4 4 H 1.48495 * 109.46915 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46929 * 299.99793 * 3 2 1 6 6 H 1.48490 * 109.47060 * 59.99732 * 3 2 1 7 7 C 1.37882 * 119.99672 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99759 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99982 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.46716 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.46857 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99690 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00041 * 179.97438 * 11 10 9 14 14 C 1.47333 * 121.57083 * 0.03127 * 13 11 10 15 15 C 1.54449 * 107.68153 * 180.45622 * 14 13 11 16 16 H 1.09000 * 112.21814 * 181.67275 * 15 14 13 17 17 C 1.53788 * 106.84370 * 58.87911 * 15 14 13 18 18 C 1.52727 * 110.91554 * 300.05991 * 17 15 14 19 19 C 1.48515 * 121.55874 * 180.02562 * 13 11 10 20 20 H 1.09001 * 113.17417 * 357.77707 * 19 13 11 21 21 C 1.51557 * 105.57538 * 234.29658 * 19 13 11 22 22 C 1.36495 * 125.45077 * 125.40722 * 21 19 13 23 23 C 1.38896 * 118.78251 * 180.08146 * 22 21 19 24 24 C 1.38279 * 120.39226 * 359.96824 * 23 22 21 25 25 C 1.38862 * 120.48326 * 0.02562 * 24 23 22 26 26 C 1.36618 * 118.82900 * 359.95800 * 25 24 23 27 27 H 0.97008 * 120.00007 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.47632 * 60.00352 * 9 7 2 29 29 H 1.09009 * 109.47098 * 300.00123 * 9 7 2 30 30 H 1.09000 * 109.47435 * 60.00283 * 10 9 7 31 31 H 1.08999 * 109.47165 * 299.99718 * 10 9 7 32 32 H 1.09000 * 109.79777 * 60.91918 * 14 13 11 33 33 H 1.08999 * 109.88418 * 300.04126 * 14 13 11 34 34 H 1.09002 * 109.18394 * 179.70247 * 17 15 14 35 35 H 1.08997 * 109.17971 * 60.41278 * 17 15 14 36 36 H 1.09004 * 109.25891 * 121.72769 * 18 17 15 37 37 H 1.09005 * 109.25753 * 241.20033 * 18 17 15 38 38 H 1.08001 * 120.60802 * 0.05359 * 22 21 19 39 39 H 1.07994 * 119.80863 * 179.97438 * 23 22 21 40 40 H 1.08001 * 119.75834 * 179.97438 * 24 23 22 41 41 H 1.07997 * 120.58226 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4916 -4.9672 0.0001 12 8 0.2788 -4.9671 0.0000 13 7 2.1654 -6.1344 -0.0003 14 6 3.6382 -6.1749 -0.0007 15 6 4.0667 -7.6587 -0.0128 16 1 5.1501 -7.7750 0.0156 17 6 3.4594 -8.2875 -1.2780 18 6 1.9360 -8.1802 -1.2629 19 6 1.4580 -7.4403 -0.0003 20 1 0.3733 -7.3405 0.0390 21 6 2.0138 -8.2041 1.1849 22 6 1.2728 -8.7502 2.1928 23 6 1.9283 -9.4226 3.2162 24 6 3.3066 -9.5346 3.2092 25 6 4.0535 -8.9764 2.1802 26 6 3.4024 -8.3167 1.1765 27 1 -0.4850 0.8401 -0.0004 28 1 0.6239 -2.5568 -0.8902 29 1 0.6245 -2.5570 0.8897 30 1 2.8718 -3.6044 0.8895 31 1 2.8718 -3.6044 -0.8905 32 1 4.0211 -5.6869 0.8956 33 1 4.0226 -5.6719 -0.8880 34 1 3.7439 -9.3386 -1.3275 35 1 3.8462 -7.7703 -2.1561 36 1 1.6053 -7.6337 -2.1462 37 1 1.5049 -9.1812 -1.2773 38 1 0.1965 -8.6606 2.1947 39 1 1.3584 -9.8607 4.0221 40 1 3.8058 -10.0594 4.0103 41 1 5.1299 -9.0633 2.1729 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882745478.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:12 Heat of formation + Delta-G solvation = -18.170501 kcal Electronic energy + Delta-G solvation = -22383.763081 eV Core-core repulsion = 19227.586719 eV Total energy + Delta-G solvation = -3156.176363 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.38570 -38.68737 -36.97806 -33.50077 -32.98801 -32.57446 -30.75114 -30.32884 -29.66964 -26.18765 -24.80668 -23.64647 -22.44965 -22.02899 -21.49172 -19.38496 -17.81655 -17.16835 -17.02670 -16.02537 -15.73334 -15.23017 -14.98781 -14.82138 -14.43764 -14.17663 -13.80680 -13.51430 -13.31823 -12.83178 -12.67789 -12.35455 -12.19993 -12.17753 -12.05449 -11.91124 -11.48421 -11.16826 -11.08393 -10.92918 -10.59830 -10.55699 -10.46812 -9.92544 -9.62033 -9.17569 -9.05523 -8.86304 -8.72013 -8.35667 -8.29059 -5.94109 -3.98267 1.19895 1.30161 3.19417 3.25809 3.33802 3.40881 3.44284 3.72692 4.35148 4.42012 4.49259 4.54344 4.72045 4.82037 4.90379 4.94748 5.14425 5.16234 5.29429 5.30861 5.40700 5.40938 5.56700 5.62245 5.71517 5.75845 5.78515 5.88459 5.93355 6.00623 6.04685 6.26405 6.27706 6.34106 6.38909 6.53821 6.69757 6.87819 6.93306 7.77012 7.80833 7.89224 8.09650 8.41038 8.77287 9.10401 9.65136 11.16927 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.025087 B = 0.003741 C = 0.003708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.861047 B = 7482.006823 C = 7550.380231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.126 4.126 11 C 0.517 3.483 12 O -0.535 6.535 13 N -0.622 5.622 14 C 0.122 3.878 15 C -0.060 4.060 16 H 0.103 0.897 17 C -0.109 4.109 18 C -0.127 4.127 19 C 0.181 3.819 20 H 0.117 0.883 21 C -0.094 4.094 22 C -0.099 4.099 23 C -0.123 4.123 24 C -0.122 4.122 25 C -0.110 4.110 26 C -0.078 4.078 27 H 0.260 0.740 28 H 0.023 0.977 29 H 0.023 0.977 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.125 0.875 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.709 -22.153 1.635 24.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.166 4.166 11 C 0.308 3.692 12 O -0.410 6.410 13 N -0.359 5.359 14 C -0.001 4.001 15 C -0.078 4.078 16 H 0.121 0.879 17 C -0.147 4.147 18 C -0.165 4.165 19 C 0.078 3.922 20 H 0.135 0.865 21 C -0.095 4.095 22 C -0.117 4.117 23 C -0.141 4.141 24 C -0.140 4.140 25 C -0.128 4.128 26 C -0.079 4.079 27 H 0.070 0.930 28 H 0.042 0.958 29 H 0.041 0.959 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.143 0.857 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 8.878 -21.975 1.607 23.755 hybrid contribution 0.521 0.867 0.164 1.025 sum 9.399 -21.108 1.771 23.174 Atomic orbital electron populations 1.70011 1.06058 1.26425 1.50347 1.25024 0.94810 0.99202 0.95336 0.86544 0.80021 0.83883 0.77575 1.19747 1.21022 1.21026 1.21257 0.92943 0.90998 1.51178 0.92584 1.18909 0.93190 0.89401 0.98574 1.21875 1.00641 0.91807 1.02246 1.21510 0.88365 0.85145 0.74165 1.90653 1.14329 1.87071 1.48956 1.48970 1.06173 1.05141 1.75626 1.21866 0.80567 0.95356 1.02316 1.20986 0.99934 0.94012 0.92902 0.87886 1.21587 0.95348 1.00936 0.96797 1.22007 0.95896 1.00640 0.97951 1.20703 0.98139 0.81976 0.91371 0.86488 1.20284 0.94065 0.98419 0.96728 1.20636 0.99993 0.97537 0.93562 1.21243 0.94591 0.99735 0.98541 1.21216 0.94064 1.00219 0.98477 1.20570 0.99585 0.98537 0.94133 1.19835 0.93821 0.98076 0.96124 0.93031 0.95831 0.95889 0.90408 0.90333 0.91140 0.90461 0.91622 0.91054 0.90812 0.91078 0.85681 0.86141 0.86241 0.85886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.72 13.29 55.43 0.74 -26.98 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.53 -15.11 9.11 -34.44 -0.31 -15.43 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 10 C -0.13 -2.66 4.54 -27.88 -0.13 -2.79 16 11 C 0.52 10.53 7.74 -10.98 -0.08 10.45 16 12 O -0.53 -13.01 15.63 5.56 0.09 -12.93 16 13 N -0.62 -9.75 2.75 -163.28 -0.45 -10.20 16 14 C 0.12 1.48 5.08 -2.83 -0.01 1.47 16 15 C -0.06 -0.58 3.74 -90.31 -0.34 -0.92 16 16 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 17 C -0.11 -1.01 5.53 -26.46 -0.15 -1.16 16 18 C -0.13 -1.40 5.72 -26.37 -0.15 -1.55 16 19 C 0.18 2.51 3.84 -67.05 -0.26 2.26 16 20 H 0.12 1.80 7.37 -51.93 -0.38 1.42 16 21 C -0.09 -1.20 5.05 -104.43 -0.53 -1.73 16 22 C -0.10 -1.18 9.98 -39.97 -0.40 -1.58 16 23 C -0.12 -1.27 10.05 -39.32 -0.40 -1.67 16 24 C -0.12 -1.18 10.04 -39.34 -0.40 -1.57 16 25 C -0.11 -1.09 9.97 -39.94 -0.40 -1.49 16 26 C -0.08 -0.88 4.90 -104.52 -0.51 -1.39 16 27 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 28 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 29 H 0.02 0.69 8.10 -51.92 -0.42 0.27 16 30 H 0.08 1.54 8.06 -51.93 -0.42 1.12 16 31 H 0.08 1.51 8.02 -51.93 -0.42 1.10 16 32 H 0.07 0.86 8.06 -51.93 -0.42 0.45 16 33 H 0.08 0.86 8.02 -51.93 -0.42 0.44 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 39 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 40 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 41 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 332.26 15.07 5.01 5.01 Total: -1.00 -34.51 332.26 -10.15 -44.66 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -6.24 Total: -1.78 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: -4.27 Total: -14.60 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: 0.29 Total: -37.18 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.09 Total: -12.93 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.51 -10.15 -44.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882745478.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.493 kcal (2) G-P(sol) polarization free energy of solvation -34.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds