Wall clock time and date at job start Tue Mar 31 2020 06:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46506 * 109.47035 * 2 1 4 4 C 1.35075 * 125.96837 * 124.71473 * 3 2 1 5 5 C 1.35291 * 107.84035 * 179.89572 * 4 3 2 6 6 Cl 1.73595 * 126.07583 * 180.14059 * 5 4 3 7 7 C 1.40491 * 107.84991 * 0.36976 * 5 4 3 8 8 N 1.40019 * 125.96695 * 179.79246 * 7 5 4 9 9 C 1.46503 * 120.00239 * 179.97438 * 8 7 5 10 10 C 1.53000 * 109.47319 * 180.02562 * 9 8 7 11 11 C 1.53004 * 109.46784 * 299.99646 * 10 9 8 12 12 C 1.52994 * 109.47136 * 59.99872 * 10 9 8 13 13 C 1.53003 * 109.47160 * 180.02562 * 10 9 8 14 14 C 1.50690 * 109.47224 * 179.97438 * 13 10 9 15 15 H 1.07997 * 120.00223 * 359.97438 * 14 13 10 16 16 C 1.37877 * 120.00180 * 179.97438 * 14 13 10 17 17 N 1.31515 * 119.99809 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00256 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47214 * 90.00070 * 18 16 14 20 20 H 1.48500 * 109.47041 * 210.00366 * 18 16 14 21 21 H 1.48508 * 109.46886 * 330.00075 * 18 16 14 22 22 N 1.31227 * 108.06574 * 359.77102 * 7 5 4 23 23 H 1.09004 * 109.47059 * 59.99372 * 1 2 3 24 24 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46930 * 299.99770 * 1 2 3 26 26 H 1.09004 * 109.46930 * 240.00230 * 2 1 3 27 27 H 1.09000 * 109.47312 * 120.00174 * 2 1 3 28 28 H 1.07992 * 126.08412 * 0.02562 * 4 3 2 29 29 H 0.96999 * 120.00167 * 0.02562 * 8 7 5 30 30 H 1.09002 * 109.47056 * 300.00263 * 9 8 7 31 31 H 1.08996 * 109.47218 * 59.99742 * 9 8 7 32 32 H 1.09000 * 109.46722 * 60.00440 * 11 10 9 33 33 H 1.09004 * 109.46983 * 179.97438 * 11 10 9 34 34 H 1.08996 * 109.47105 * 300.00126 * 11 10 9 35 35 H 1.08997 * 109.47425 * 60.00386 * 12 10 9 36 36 H 1.09004 * 109.47064 * 180.02562 * 12 10 9 37 37 H 1.08995 * 109.47398 * 299.99503 * 12 10 9 38 38 H 1.09002 * 109.46952 * 299.99837 * 13 10 9 39 39 H 1.08998 * 109.46981 * 59.99525 * 13 10 9 40 40 H 0.96997 * 120.00058 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.8698 1.9217 0.8986 5 6 3.0741 3.2132 0.5513 6 17 4.0921 4.3468 1.3834 7 6 2.3120 3.4755 -0.5995 8 7 2.2406 4.6985 -1.2775 9 6 1.4003 4.8266 -2.4707 10 6 1.5009 6.2531 -3.0146 11 6 1.0250 7.2406 -1.9473 12 6 2.9550 6.5583 -3.3797 13 6 0.6228 6.3871 -4.2604 14 6 0.7215 7.7922 -4.7958 15 1 1.3475 8.5173 -4.2972 16 6 0.0125 8.1521 -5.9222 17 7 -0.7502 7.2692 -6.5292 18 14 0.1354 9.8938 -6.5864 19 1 1.2493 9.9729 -7.5651 20 1 -1.1388 10.2592 -7.2558 21 1 0.3932 10.8337 -5.4659 22 7 1.6792 2.3739 -0.9282 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 3.3108 1.4129 1.7429 29 1 2.7480 5.4607 -0.9576 30 1 1.7395 4.1233 -3.2312 31 1 0.3644 4.6087 -2.2107 32 1 1.6502 7.1453 -1.0595 33 1 1.0971 8.2570 -2.3346 34 1 -0.0109 7.0232 -1.6872 35 1 3.2940 5.8548 -4.1401 36 1 3.0268 7.5747 -3.7668 37 1 3.5802 6.4631 -2.4920 38 1 0.9614 5.6835 -5.0210 39 1 -0.4130 6.1697 -3.9999 40 1 -1.2492 7.5225 -7.3214 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886368589.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:05 Heat of formation + Delta-G solvation = 55.551125 kcal Electronic energy + Delta-G solvation = -20347.940190 eV Core-core repulsion = 17224.820538 eV Total energy + Delta-G solvation = -3123.119651 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.130 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.11053 -37.66373 -36.37964 -34.94641 -33.24924 -32.02644 -29.80619 -28.79313 -26.95227 -26.39957 -25.83209 -23.50110 -22.48935 -21.28477 -19.99403 -18.12675 -17.41677 -16.26937 -15.87364 -15.32564 -14.82988 -14.79894 -14.43060 -14.24409 -13.77534 -13.26729 -12.96447 -12.90373 -12.61461 -12.35465 -12.25453 -12.00808 -11.76587 -11.46522 -11.22071 -11.13729 -10.95907 -10.79837 -10.57489 -10.32157 -10.24919 -10.16339 -10.12584 -9.68963 -9.12336 -8.86415 -8.54822 -8.31627 -7.41141 -5.95984 -3.96610 1.81222 2.00057 2.78983 2.97158 3.34008 3.40721 3.43124 3.78736 4.38111 4.49282 4.63327 4.77650 4.96907 5.23813 5.36783 5.39804 5.49272 5.57651 5.67519 5.73711 5.87561 5.90321 6.02327 6.30897 6.36270 6.39004 6.51921 6.73213 6.75712 6.90662 7.14006 7.16553 7.18848 7.40858 7.69272 7.70901 7.82723 8.03591 8.27222 8.46518 9.08311 9.66245 11.15596 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.022099 B = 0.003722 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.742053 B = 7520.904461 C = 8535.971056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.140 3.860 3 N -0.371 5.371 4 C 0.090 3.910 5 C -0.226 4.226 6 Cl -0.053 7.053 7 C 0.360 3.640 8 N -0.706 5.706 9 C 0.145 3.855 10 C -0.072 4.072 11 C -0.126 4.126 12 C -0.126 4.126 13 C 0.037 3.963 14 C -0.509 4.509 15 H 0.059 0.941 16 C 0.056 3.944 17 N -0.896 5.896 18 Si 0.888 3.112 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.274 1.274 22 N -0.336 5.336 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.059 0.941 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.177 0.823 29 H 0.409 0.591 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.030 0.970 33 H 0.065 0.935 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.065 0.935 37 H 0.030 0.970 38 H 0.017 0.983 39 H 0.017 0.983 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.989 -13.381 16.539 22.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.019 3.981 3 N -0.153 5.153 4 C -0.059 4.059 5 C -0.268 4.268 6 Cl -0.025 7.025 7 C 0.100 3.900 8 N -0.348 5.348 9 C 0.022 3.978 10 C -0.072 4.072 11 C -0.183 4.183 12 C -0.183 4.183 13 C 0.000 4.000 14 C -0.547 4.547 15 H 0.077 0.923 16 C -0.145 4.145 17 N -0.535 5.535 18 Si 0.716 3.284 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.199 1.199 22 N -0.170 5.170 23 H 0.093 0.907 24 H 0.091 0.909 25 H 0.079 0.921 26 H 0.102 0.898 27 H 0.111 0.889 28 H 0.194 0.806 29 H 0.247 0.753 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.049 0.951 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.049 0.951 38 H 0.036 0.964 39 H 0.036 0.964 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.983 -14.037 15.499 21.750 hybrid contribution 0.846 1.626 0.340 1.864 sum 6.828 -12.412 15.839 21.249 Atomic orbital electron populations 1.22061 0.93780 1.02625 1.03945 1.21620 0.96110 0.76868 1.03478 1.48034 1.36271 1.09944 1.21026 1.21995 0.95059 0.92848 0.96028 1.20365 1.11098 0.92920 1.02381 1.98298 1.66928 1.59830 1.77444 1.19196 0.92404 0.88488 0.89918 1.44201 1.52948 1.07210 1.30443 1.21500 0.93351 0.98057 0.84934 1.20881 0.97070 0.91297 0.97955 1.21743 0.99685 1.00567 0.96328 1.21739 0.94902 1.02591 0.99088 1.19078 0.93835 0.97193 0.89927 1.21205 1.26736 0.96383 1.10421 0.92253 1.25005 0.95526 0.96974 0.96982 1.69966 1.29456 1.33959 1.20156 0.86660 0.77324 0.85260 0.79142 1.20796 1.21372 1.19930 1.77688 1.28312 0.95567 1.15447 0.90717 0.90888 0.92144 0.89804 0.88853 0.80588 0.75252 0.92689 0.92685 0.95132 0.91600 0.93473 0.93469 0.91610 0.95124 0.96430 0.96422 0.93115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.33 10.10 37.16 0.38 -0.95 16 2 C 0.14 1.08 7.23 -4.04 -0.03 1.05 16 3 N -0.37 -4.43 3.68 -61.33 -0.23 -4.65 16 4 C 0.09 0.98 11.42 -17.17 -0.20 0.78 16 5 C -0.23 -3.03 6.67 -39.78 -0.27 -3.30 16 6 Cl -0.05 -0.64 29.17 -51.86 -1.51 -2.16 16 7 C 0.36 5.75 7.91 -154.49 -1.22 4.52 16 8 N -0.71 -11.55 5.17 -60.03 -0.31 -11.86 16 9 C 0.14 2.68 4.93 -4.04 -0.02 2.66 16 10 C -0.07 -1.43 0.54 -154.51 -0.08 -1.51 16 11 C -0.13 -2.36 8.05 37.16 0.30 -2.06 16 12 C -0.13 -2.36 8.05 37.15 0.30 -2.06 16 13 C 0.04 0.93 4.04 -27.89 -0.11 0.82 16 14 C -0.51 -13.79 7.65 -34.45 -0.26 -14.05 16 15 H 0.06 1.55 5.68 -52.49 -0.30 1.26 16 16 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 17 N -0.90 -26.71 13.29 55.43 0.74 -25.98 16 18 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 22 N -0.34 -5.38 12.08 31.43 0.38 -5.00 16 23 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.09 0.41 8.07 -51.93 -0.42 -0.01 16 28 H 0.18 1.19 8.06 -52.49 -0.42 0.76 16 29 H 0.41 6.34 6.16 -40.82 -0.25 6.09 16 30 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.03 0.49 6.86 -51.93 -0.36 0.13 16 33 H 0.07 1.31 6.62 -51.93 -0.34 0.97 16 34 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.06 1.31 6.62 -51.93 -0.34 0.96 16 37 H 0.03 0.49 6.86 -51.93 -0.36 0.14 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 340.93 15.07 5.14 5.14 Total: -1.00 -31.11 340.93 -8.29 -39.40 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -6.15 Total: 1.25 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: -1.32 Total: -12.62 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: 0.58 Total: -47.49 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.51 Total: -2.16 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.11 -8.29 -39.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886368589.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.951 kcal (2) G-P(sol) polarization free energy of solvation -31.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds