Wall clock time and date at job start Tue Mar 31 2020 06:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46506 * 109.47035 * 2 1 4 4 C 1.35075 * 125.96837 * 124.71473 * 3 2 1 5 5 C 1.35291 * 107.84035 * 179.89572 * 4 3 2 6 6 Cl 1.73595 * 126.07583 * 180.14059 * 5 4 3 7 7 C 1.40491 * 107.84991 * 0.36976 * 5 4 3 8 8 N 1.40019 * 125.96695 * 179.79246 * 7 5 4 9 9 C 1.46503 * 120.00239 * 179.97438 * 8 7 5 10 10 C 1.53000 * 109.47319 * 180.02562 * 9 8 7 11 11 C 1.53004 * 109.46784 * 299.99646 * 10 9 8 12 12 C 1.52994 * 109.47136 * 59.99872 * 10 9 8 13 13 C 1.53003 * 109.47160 * 180.02562 * 10 9 8 14 14 C 1.50690 * 109.47224 * 179.97438 * 13 10 9 15 15 H 1.07997 * 120.00223 * 359.97438 * 14 13 10 16 16 C 1.37877 * 120.00180 * 179.97438 * 14 13 10 17 17 N 1.31515 * 119.99809 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00256 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47214 * 90.00070 * 18 16 14 20 20 H 1.48500 * 109.47041 * 210.00366 * 18 16 14 21 21 H 1.48508 * 109.46886 * 330.00075 * 18 16 14 22 22 N 1.31227 * 108.06574 * 359.77102 * 7 5 4 23 23 H 1.09004 * 109.47059 * 59.99372 * 1 2 3 24 24 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46930 * 299.99770 * 1 2 3 26 26 H 1.09004 * 109.46930 * 240.00230 * 2 1 3 27 27 H 1.09000 * 109.47312 * 120.00174 * 2 1 3 28 28 H 1.07992 * 126.08412 * 0.02562 * 4 3 2 29 29 H 0.96999 * 120.00167 * 0.02562 * 8 7 5 30 30 H 1.09002 * 109.47056 * 300.00263 * 9 8 7 31 31 H 1.08996 * 109.47218 * 59.99742 * 9 8 7 32 32 H 1.09000 * 109.46722 * 60.00440 * 11 10 9 33 33 H 1.09004 * 109.46983 * 179.97438 * 11 10 9 34 34 H 1.08996 * 109.47105 * 300.00126 * 11 10 9 35 35 H 1.08997 * 109.47425 * 60.00386 * 12 10 9 36 36 H 1.09004 * 109.47064 * 180.02562 * 12 10 9 37 37 H 1.08995 * 109.47398 * 299.99503 * 12 10 9 38 38 H 1.09002 * 109.46952 * 299.99837 * 13 10 9 39 39 H 1.08998 * 109.46981 * 59.99525 * 13 10 9 40 40 H 0.96997 * 120.00058 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.8698 1.9217 0.8986 5 6 3.0741 3.2132 0.5513 6 17 4.0921 4.3468 1.3834 7 6 2.3120 3.4755 -0.5995 8 7 2.2406 4.6985 -1.2775 9 6 1.4003 4.8266 -2.4707 10 6 1.5009 6.2531 -3.0146 11 6 1.0250 7.2406 -1.9473 12 6 2.9550 6.5583 -3.3797 13 6 0.6228 6.3871 -4.2604 14 6 0.7215 7.7922 -4.7958 15 1 1.3475 8.5173 -4.2972 16 6 0.0125 8.1521 -5.9222 17 7 -0.7502 7.2692 -6.5292 18 14 0.1354 9.8938 -6.5864 19 1 1.2493 9.9729 -7.5651 20 1 -1.1388 10.2592 -7.2558 21 1 0.3932 10.8337 -5.4659 22 7 1.6792 2.3739 -0.9282 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 3.3108 1.4129 1.7429 29 1 2.7480 5.4607 -0.9576 30 1 1.7395 4.1233 -3.2312 31 1 0.3644 4.6087 -2.2107 32 1 1.6502 7.1453 -1.0595 33 1 1.0971 8.2570 -2.3346 34 1 -0.0109 7.0232 -1.6872 35 1 3.2940 5.8548 -4.1401 36 1 3.0268 7.5747 -3.7668 37 1 3.5802 6.4631 -2.4920 38 1 0.9614 5.6835 -5.0210 39 1 -0.4130 6.1697 -3.9999 40 1 -1.2492 7.5225 -7.3214 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886368589.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:05 Heat of formation + Delta-G solvation = 37.846961 kcal Electronic energy + Delta-G solvation = -20348.707900 eV Core-core repulsion = 17224.820538 eV Total energy + Delta-G solvation = -3123.887362 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.10108 -39.24033 -37.31264 -36.12318 -34.70595 -33.65161 -30.86913 -29.83733 -28.86792 -27.96528 -27.28568 -24.97450 -23.78640 -22.26518 -21.09137 -19.68436 -18.47891 -18.34852 -16.91738 -16.50642 -16.35682 -16.05910 -15.62906 -15.58343 -14.82812 -14.62738 -14.56510 -14.08061 -14.03962 -13.93599 -13.51285 -12.96933 -12.91467 -12.71899 -12.67229 -12.55809 -12.34041 -12.28939 -12.18133 -12.10083 -11.93685 -11.59555 -11.28859 -11.10684 -10.94556 -10.83340 -10.50336 -9.56936 -8.57112 -8.13251 -6.20804 0.92078 1.12715 1.42630 1.43102 1.53643 1.81810 1.85520 2.44077 2.65089 3.21014 3.63391 3.95873 4.02967 4.11532 4.15748 4.23970 4.39056 4.44288 4.55343 4.69851 4.73961 4.76619 4.82358 4.91879 4.98162 4.99638 5.11939 5.17220 5.29825 5.44428 5.48856 5.51802 5.56847 5.81103 5.90403 6.08726 6.23222 6.33199 6.50805 6.93718 7.11809 7.46667 8.99349 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.022099 B = 0.003722 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.742053 B = 7520.904461 C = 8535.971056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.130 3.870 3 N -0.368 5.368 4 C 0.112 3.888 5 C -0.248 4.248 6 Cl -0.045 7.045 7 C 0.338 3.662 8 N -0.706 5.706 9 C 0.166 3.834 10 C -0.065 4.065 11 C -0.118 4.118 12 C -0.118 4.118 13 C 0.044 3.956 14 C -0.515 4.515 15 H 0.070 0.930 16 C -0.003 4.003 17 N -0.938 5.938 18 Si 0.958 3.042 19 H -0.275 1.275 20 H -0.288 1.288 21 H -0.261 1.261 22 N -0.378 5.378 23 H 0.038 0.962 24 H 0.101 0.899 25 H 0.054 0.946 26 H 0.088 0.912 27 H 0.140 0.860 28 H 0.225 0.775 29 H 0.413 0.587 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.055 0.945 37 H 0.061 0.939 38 H -0.014 1.014 39 H -0.014 1.014 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.622 -13.774 18.828 24.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.011 3.989 3 N -0.150 5.150 4 C -0.038 4.038 5 C -0.289 4.289 6 Cl -0.017 7.017 7 C 0.079 3.921 8 N -0.349 5.349 9 C 0.041 3.959 10 C -0.065 4.065 11 C -0.176 4.176 12 C -0.176 4.176 13 C 0.006 3.994 14 C -0.553 4.553 15 H 0.088 0.912 16 C -0.200 4.200 17 N -0.579 5.579 18 Si 0.783 3.217 19 H -0.201 1.201 20 H -0.214 1.214 21 H -0.185 1.185 22 N -0.213 5.213 23 H 0.058 0.942 24 H 0.119 0.881 25 H 0.073 0.927 26 H 0.106 0.894 27 H 0.158 0.842 28 H 0.241 0.759 29 H 0.253 0.747 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.005 0.995 39 H 0.005 0.995 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.627 -14.444 17.808 24.165 hybrid contribution 0.320 1.582 -0.311 1.643 sum 7.947 -12.863 17.497 23.125 Atomic orbital electron populations 1.22021 0.94298 1.03810 1.01854 1.22075 0.95745 0.75080 1.05982 1.48434 1.35910 1.10482 1.20133 1.22702 0.93186 0.91949 0.96009 1.20498 1.11948 0.94219 1.02254 1.98293 1.66599 1.59784 1.77063 1.19408 0.93524 0.88135 0.91040 1.43886 1.53002 1.08107 1.29905 1.21012 0.92833 0.96469 0.85575 1.20695 0.96945 0.92744 0.96123 1.21650 0.99781 0.99225 0.96903 1.21648 0.94199 1.01546 1.00176 1.18933 0.93053 0.95862 0.91549 1.21590 1.26204 0.97189 1.10303 0.91171 1.25924 0.95275 1.01294 0.97527 1.70118 1.30698 1.36274 1.20805 0.85552 0.77253 0.80172 0.78715 1.20120 1.21379 1.18509 1.77580 1.29320 0.96769 1.17607 0.94245 0.88077 0.92706 0.89376 0.84212 0.75864 0.74749 0.94445 0.94464 0.92020 0.92639 0.94404 0.94392 0.92602 0.92010 0.99522 0.99517 0.93152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 10.10 71.98 0.73 -1.64 16 2 C 0.13 1.65 7.23 86.38 0.62 2.27 16 3 N -0.37 -8.03 3.68 -347.96 -1.28 -9.31 16 4 C 0.11 2.06 11.42 83.51 0.95 3.01 16 5 C -0.25 -6.16 6.67 22.14 0.15 -6.02 16 6 Cl -0.05 -1.00 29.17 -2.72 -0.08 -1.08 16 7 C 0.34 10.62 7.91 133.39 1.06 11.67 16 8 N -0.71 -22.98 5.17 -343.83 -1.78 -24.76 16 9 C 0.17 6.36 4.93 86.38 0.43 6.78 16 10 C -0.06 -2.63 0.54 -52.18 -0.03 -2.66 16 11 C -0.12 -4.40 8.05 71.98 0.58 -3.83 16 12 C -0.12 -4.40 8.05 71.98 0.58 -3.82 16 13 C 0.04 2.29 4.04 29.85 0.12 2.42 16 14 C -0.51 -28.42 7.65 25.60 0.20 -28.22 16 15 H 0.07 3.66 5.68 -2.91 -0.02 3.64 16 16 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 17 N -0.94 -57.74 13.29 21.45 0.28 -57.46 16 18 Si 0.96 44.44 29.54 68.60 2.03 46.46 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 20 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 21 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 22 N -0.38 -12.11 12.08 -54.48 -0.66 -12.77 16 23 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 26 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 27 H 0.14 0.52 8.07 -2.39 -0.02 0.50 16 28 H 0.22 1.81 8.06 -2.91 -0.02 1.78 16 29 H 0.41 12.31 6.16 -92.71 -0.57 11.74 16 30 H 0.04 1.54 8.14 -2.39 -0.02 1.53 16 31 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.06 1.90 6.86 -2.39 -0.02 1.88 16 33 H 0.05 2.17 6.62 -2.38 -0.02 2.16 16 34 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.05 2.18 6.62 -2.38 -0.02 2.16 16 37 H 0.06 1.90 6.86 -2.39 -0.02 1.88 16 38 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 39 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 40 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -70.53 340.93 4.82 -65.71 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 0.46 Total: 12.95 kcal Atomic # 6 Polarization: -25.59 SS G_CDS: 5.84 Total: -19.75 kcal Atomic # 7 Polarization: -100.86 SS G_CDS: -3.43 Total: -104.29 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -0.08 Total: -1.08 kcal Total: -70.53 4.82 -65.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886368589.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.562 kcal (2) G-P(sol) polarization free energy of solvation -70.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds