Wall clock time and date at job start Tue Mar 31 2020 05:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00315 * 2 1 4 4 H 1.48501 * 109.47582 * 240.00216 * 3 2 1 5 5 H 1.48505 * 109.47243 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47216 * 120.00087 * 3 2 1 7 7 C 1.37877 * 119.99698 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00251 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00255 * 359.97438 * 7 2 1 10 10 C 1.50701 * 109.47402 * 179.97438 * 9 7 2 11 11 C 1.35358 * 126.74806 * 124.99642 * 10 9 7 12 12 N 1.35313 * 106.17043 * 180.02562 * 11 10 9 13 13 C 1.46500 * 125.86534 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47473 * 124.99947 * 13 12 11 15 15 C 1.53000 * 109.47060 * 180.02562 * 14 13 12 16 16 H 1.09000 * 110.01718 * 306.38553 * 15 14 13 17 17 C 1.54270 * 110.02880 * 185.00117 * 15 14 13 18 18 C 1.54891 * 104.19183 * 217.10362 * 17 15 14 19 19 C 1.54885 * 102.75198 * 37.94061 * 18 17 15 20 20 C 1.53874 * 110.03588 * 67.83206 * 15 14 13 21 21 F 1.39897 * 110.03380 * 238.57029 * 20 15 14 22 22 F 1.39903 * 110.02671 * 0.02562 * 20 15 14 23 23 N 1.28710 * 108.26615 * 0.26693 * 12 11 10 24 24 N 1.28640 * 110.17728 * 359.55569 * 23 12 11 25 25 H 0.97002 * 119.99896 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.47114 * 60.00460 * 9 7 2 27 27 H 1.09002 * 109.47339 * 300.00439 * 9 7 2 28 28 H 1.07993 * 126.91163 * 0.05030 * 11 10 9 29 29 H 1.09002 * 109.47129 * 4.99690 * 13 12 11 30 30 H 1.08998 * 109.46845 * 245.00497 * 13 12 11 31 31 H 1.09002 * 109.47153 * 59.99757 * 14 13 12 32 32 H 1.09001 * 109.46832 * 299.99948 * 14 13 12 33 33 H 1.08999 * 110.48554 * 335.78128 * 17 15 14 34 34 H 1.09005 * 110.48658 * 98.29411 * 17 15 14 35 35 H 1.09005 * 110.75451 * 156.25815 * 18 17 15 36 36 H 1.09004 * 110.75568 * 279.62352 * 18 17 15 37 37 H 1.09007 * 110.48146 * 80.73270 * 19 18 17 38 38 H 1.08993 * 110.48891 * 203.37962 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2302 -3.6447 -0.0018 11 6 2.2843 -4.6648 0.8862 12 7 3.3148 -5.4500 0.4958 13 6 3.7554 -6.6802 1.1581 14 6 3.7707 -7.8272 0.1457 15 6 4.2302 -9.1121 0.8376 16 1 5.1828 -8.9450 1.3403 17 6 4.3708 -10.2480 -0.1968 18 6 3.8845 -11.5106 0.5573 19 6 2.7035 -10.9709 1.4017 20 6 3.1702 -9.5717 1.8539 21 9 3.7321 -9.6441 3.1330 22 9 2.0894 -8.6833 1.8537 23 7 3.8447 -4.9276 -0.5545 24 7 3.2172 -3.8529 -0.8802 25 1 -0.4850 0.8401 0.0004 26 1 0.6240 -2.5567 -0.8904 27 1 0.6246 -2.5571 0.8896 28 1 1.6353 -4.8209 1.7351 29 1 3.0694 -6.9214 1.9701 30 1 4.7583 -6.5372 1.5603 31 1 4.4567 -7.5860 -0.6663 32 1 2.7677 -7.9703 -0.2564 33 1 3.7393 -10.0547 -1.0639 34 1 5.4114 -10.3602 -0.5012 35 1 3.5419 -12.2714 -0.1441 36 1 4.6717 -11.9034 1.2008 37 1 1.8028 -10.8942 0.7926 38 1 2.5278 -11.6120 2.2654 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887426638.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:01 Heat of formation + Delta-G solvation = -22.475865 kcal Electronic energy + Delta-G solvation = -22311.262715 eV Core-core repulsion = 18632.962879 eV Total energy + Delta-G solvation = -3678.299836 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.135 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.34424 -47.36871 -42.44537 -38.30710 -35.21841 -33.30632 -31.84222 -30.96983 -28.57875 -27.78192 -27.05150 -23.95400 -23.27448 -21.86146 -21.01180 -20.66508 -19.86707 -18.05697 -17.41029 -16.84397 -16.45209 -16.11904 -15.63755 -15.09081 -14.83095 -14.51212 -14.39030 -14.00781 -13.78294 -13.60817 -13.49810 -12.89473 -12.64558 -12.40627 -12.16425 -12.02416 -11.87834 -11.65894 -11.61102 -11.47704 -11.23748 -10.97445 -10.77585 -10.66629 -10.60350 -10.02510 -9.64946 -9.39386 -9.23611 -8.39034 -8.07463 -5.95101 -3.95515 2.28591 2.81759 3.29087 3.41390 3.43776 3.46628 3.47072 3.56621 3.69610 3.89366 4.38572 4.46715 4.54563 4.58253 4.64565 4.74552 4.79182 4.89503 5.06373 5.11189 5.20678 5.25753 5.37772 5.41603 5.43051 5.45943 5.57987 5.66127 5.82693 5.94598 6.14323 6.38772 7.18657 7.25301 7.57924 7.67314 8.02674 8.41901 9.07642 9.36507 9.66969 11.16070 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.040675 B = 0.003053 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.211099 B = 9170.123994 C = 9386.173669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.503 4.503 8 H 0.058 0.942 9 C 0.093 3.907 10 C 0.033 3.967 11 C -0.079 4.079 12 N -0.302 5.302 13 C 0.113 3.887 14 C -0.124 4.124 15 C -0.128 4.128 16 H 0.106 0.894 17 C -0.117 4.117 18 C -0.123 4.123 19 C -0.162 4.162 20 C 0.278 3.722 21 F -0.197 7.197 22 F -0.192 7.192 23 N -0.112 5.112 24 N -0.262 5.262 25 H 0.262 0.738 26 H 0.039 0.961 27 H 0.036 0.964 28 H 0.180 0.820 29 H 0.107 0.893 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.816 -26.593 4.331 27.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.144 4.144 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.542 4.542 8 H 0.076 0.924 9 C 0.054 3.946 10 C -0.104 4.104 11 C -0.228 4.228 12 N -0.097 5.097 13 C -0.009 4.009 14 C -0.162 4.162 15 C -0.147 4.147 16 H 0.124 0.876 17 C -0.155 4.155 18 C -0.161 4.161 19 C -0.200 4.200 20 C 0.242 3.758 21 F -0.178 7.178 22 F -0.173 7.173 23 N -0.091 5.091 24 N -0.129 5.129 25 H 0.071 0.929 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.197 0.803 29 H 0.125 0.875 30 H 0.108 0.892 31 H 0.113 0.887 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.118 0.882 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.755 -26.588 3.310 27.893 hybrid contribution -0.441 1.021 1.261 1.682 sum 7.315 -25.566 4.572 26.982 Atomic orbital electron populations 1.69939 1.05963 1.26831 1.51137 1.24971 0.94877 0.99196 0.95377 0.86574 0.79485 0.82764 0.78713 1.20098 1.21329 1.20354 1.21018 0.93220 0.89812 1.50142 0.92355 1.17715 0.90887 0.87530 0.98472 1.23013 0.97933 0.97720 0.91774 1.23388 0.97515 0.96015 1.05886 1.47097 1.22475 1.19285 1.20835 1.22148 1.02503 0.80685 0.95575 1.21878 1.04212 0.91396 0.98731 1.22797 0.98845 0.96693 0.96395 0.87596 1.22421 1.03093 0.92496 0.97450 1.22489 0.97009 0.97797 0.98777 1.23366 1.00927 0.93298 1.02417 1.21926 0.83152 0.90175 0.80543 1.93029 1.85432 1.96858 1.42479 1.92985 1.57182 1.70544 1.96561 1.78130 1.21702 1.07270 1.01968 1.75057 1.06870 1.07302 1.23666 0.92888 0.94344 0.94568 0.80254 0.87475 0.89218 0.88709 0.89890 0.90057 0.89806 0.89791 0.90387 0.88220 0.88873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.11 13.29 55.43 0.74 -26.37 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 22.47 29.54 -169.99 -5.02 17.45 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.50 -14.86 9.09 -34.44 -0.31 -15.17 16 8 H 0.06 1.75 7.74 -52.48 -0.41 1.35 16 9 C 0.09 2.49 5.55 -29.04 -0.16 2.33 16 10 C 0.03 0.78 6.44 -82.78 -0.53 0.25 16 11 C -0.08 -1.53 11.49 -17.04 -0.20 -1.73 16 12 N -0.30 -5.26 3.44 -61.26 -0.21 -5.47 16 13 C 0.11 1.35 6.17 -4.04 -0.02 1.33 16 14 C -0.12 -1.21 4.26 -26.73 -0.11 -1.32 16 15 C -0.13 -0.90 2.78 -89.50 -0.25 -1.15 16 16 H 0.11 0.67 8.02 -51.93 -0.42 0.26 16 17 C -0.12 -0.61 6.36 -25.07 -0.16 -0.77 16 18 C -0.12 -0.53 6.91 -24.74 -0.17 -0.70 16 19 C -0.16 -0.93 6.40 -25.07 -0.16 -1.09 16 20 C 0.28 2.27 2.29 -25.61 -0.06 2.21 16 21 F -0.20 -1.88 17.04 2.25 0.04 -1.84 16 22 F -0.19 -2.00 13.40 2.25 0.03 -1.97 16 23 N -0.11 -2.33 12.92 60.35 0.78 -1.55 16 24 N -0.26 -6.42 12.40 33.29 0.41 -6.00 16 25 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 26 H 0.04 1.10 8.14 -51.93 -0.42 0.67 16 27 H 0.04 0.96 8.12 -51.93 -0.42 0.54 16 28 H 0.18 2.85 8.06 -52.49 -0.42 2.43 16 29 H 0.11 1.18 5.88 -51.93 -0.31 0.88 16 30 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.09 0.97 8.12 -51.93 -0.42 0.55 16 32 H 0.08 0.89 7.63 -51.93 -0.40 0.49 16 33 H 0.08 0.44 7.85 -51.93 -0.41 0.03 16 34 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.10 0.54 8.12 -51.93 -0.42 0.12 16 38 H 0.09 0.48 8.11 -51.93 -0.42 0.06 16 LS Contribution 323.20 15.07 4.87 4.87 Total: -1.00 -34.14 323.20 -5.89 -40.03 By element: Atomic # 1 Polarization: 0.41 SS G_CDS: -5.29 Total: -4.88 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: -2.24 Total: -14.26 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: 1.72 Total: -39.40 kcal Atomic # 9 Polarization: -3.88 SS G_CDS: 0.07 Total: -3.81 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.14 -5.89 -40.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887426638.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.556 kcal (2) G-P(sol) polarization free energy of solvation -34.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds