Wall clock time and date at job start Tue Mar 31 2020 05:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00315 * 2 1 4 4 H 1.48501 * 109.47582 * 240.00216 * 3 2 1 5 5 H 1.48505 * 109.47243 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47216 * 120.00087 * 3 2 1 7 7 C 1.37877 * 119.99698 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00251 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00255 * 359.97438 * 7 2 1 10 10 C 1.50701 * 109.47402 * 179.97438 * 9 7 2 11 11 C 1.35358 * 126.74806 * 124.99642 * 10 9 7 12 12 N 1.35313 * 106.17043 * 180.02562 * 11 10 9 13 13 C 1.46500 * 125.86534 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47473 * 124.99947 * 13 12 11 15 15 C 1.53000 * 109.47060 * 180.02562 * 14 13 12 16 16 H 1.09000 * 110.01718 * 306.38553 * 15 14 13 17 17 C 1.54270 * 110.02880 * 185.00117 * 15 14 13 18 18 C 1.54891 * 104.19183 * 217.10362 * 17 15 14 19 19 C 1.54885 * 102.75198 * 37.94061 * 18 17 15 20 20 C 1.53874 * 110.03588 * 67.83206 * 15 14 13 21 21 F 1.39897 * 110.03380 * 238.57029 * 20 15 14 22 22 F 1.39903 * 110.02671 * 0.02562 * 20 15 14 23 23 N 1.28710 * 108.26615 * 0.26693 * 12 11 10 24 24 N 1.28640 * 110.17728 * 359.55569 * 23 12 11 25 25 H 0.97002 * 119.99896 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.47114 * 60.00460 * 9 7 2 27 27 H 1.09002 * 109.47339 * 300.00439 * 9 7 2 28 28 H 1.07993 * 126.91163 * 0.05030 * 11 10 9 29 29 H 1.09002 * 109.47129 * 4.99690 * 13 12 11 30 30 H 1.08998 * 109.46845 * 245.00497 * 13 12 11 31 31 H 1.09002 * 109.47153 * 59.99757 * 14 13 12 32 32 H 1.09001 * 109.46832 * 299.99948 * 14 13 12 33 33 H 1.08999 * 110.48554 * 335.78128 * 17 15 14 34 34 H 1.09005 * 110.48658 * 98.29411 * 17 15 14 35 35 H 1.09005 * 110.75451 * 156.25815 * 18 17 15 36 36 H 1.09004 * 110.75568 * 279.62352 * 18 17 15 37 37 H 1.09007 * 110.48146 * 80.73270 * 19 18 17 38 38 H 1.08993 * 110.48891 * 203.37962 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2302 -3.6447 -0.0018 11 6 2.2843 -4.6648 0.8862 12 7 3.3148 -5.4500 0.4958 13 6 3.7554 -6.6802 1.1581 14 6 3.7707 -7.8272 0.1457 15 6 4.2302 -9.1121 0.8376 16 1 5.1828 -8.9450 1.3403 17 6 4.3708 -10.2480 -0.1968 18 6 3.8845 -11.5106 0.5573 19 6 2.7035 -10.9709 1.4017 20 6 3.1702 -9.5717 1.8539 21 9 3.7321 -9.6441 3.1330 22 9 2.0894 -8.6833 1.8537 23 7 3.8447 -4.9276 -0.5545 24 7 3.2172 -3.8529 -0.8802 25 1 -0.4850 0.8401 0.0004 26 1 0.6240 -2.5567 -0.8904 27 1 0.6246 -2.5571 0.8896 28 1 1.6353 -4.8209 1.7351 29 1 3.0694 -6.9214 1.9701 30 1 4.7583 -6.5372 1.5603 31 1 4.4567 -7.5860 -0.6663 32 1 2.7677 -7.9703 -0.2564 33 1 3.7393 -10.0547 -1.0639 34 1 5.4114 -10.3602 -0.5012 35 1 3.5419 -12.2714 -0.1441 36 1 4.6717 -11.9034 1.2008 37 1 1.8028 -10.8942 0.7926 38 1 2.5278 -11.6120 2.2654 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887426638.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:01 Heat of formation + Delta-G solvation = -43.165471 kcal Electronic energy + Delta-G solvation = -22312.159884 eV Core-core repulsion = 18632.962879 eV Total energy + Delta-G solvation = -3679.197005 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.135 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.02883 -48.06880 -44.06372 -38.87277 -36.46912 -35.30057 -33.09716 -32.70836 -29.58317 -29.00397 -28.19616 -25.51266 -24.80595 -22.76529 -22.18005 -21.54335 -21.12773 -18.70372 -18.58952 -18.16194 -17.85597 -17.23596 -16.95484 -16.53955 -15.76813 -15.63547 -15.42636 -14.97032 -14.63789 -14.54020 -14.40541 -14.24173 -14.12522 -13.79043 -13.46505 -13.01132 -12.92803 -12.71482 -12.67324 -12.49749 -12.44726 -12.18283 -12.08452 -11.86616 -11.70066 -11.62028 -11.45407 -11.31840 -10.84279 -10.58654 -9.88115 -8.18970 -6.28057 0.73192 1.40030 1.43901 1.50597 1.53213 1.74541 2.44424 2.70623 2.96063 3.13593 3.15195 3.27375 3.49250 3.69653 3.76329 3.95015 4.14478 4.19907 4.25873 4.27184 4.30565 4.35791 4.44577 4.55975 4.62617 4.77971 4.84717 4.94088 5.07755 5.10070 5.14294 5.28515 5.32449 5.43213 5.53017 5.76082 5.80588 6.21612 6.79872 7.38494 7.68855 8.91984 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.040675 B = 0.003053 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.211099 B = 9170.123994 C = 9386.173669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.008 3.992 3 Si 0.963 3.037 4 H -0.274 1.274 5 H -0.275 1.275 6 H -0.269 1.269 7 C -0.526 4.526 8 H 0.045 0.955 9 C 0.103 3.897 10 C -0.006 4.006 11 C -0.056 4.056 12 N -0.282 5.282 13 C 0.101 3.899 14 C -0.117 4.117 15 C -0.120 4.120 16 H 0.117 0.883 17 C -0.116 4.116 18 C -0.117 4.117 19 C -0.161 4.161 20 C 0.267 3.733 21 F -0.206 7.206 22 F -0.208 7.208 23 N -0.114 5.114 24 N -0.307 5.307 25 H 0.267 0.733 26 H 0.009 0.991 27 H 0.032 0.968 28 H 0.216 0.784 29 H 0.121 0.879 30 H 0.110 0.890 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.009 -28.104 5.211 29.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.190 4.190 3 Si 0.788 3.212 4 H -0.200 1.200 5 H -0.200 1.200 6 H -0.194 1.194 7 C -0.564 4.564 8 H 0.063 0.937 9 C 0.064 3.936 10 C -0.144 4.144 11 C -0.206 4.206 12 N -0.078 5.078 13 C -0.019 4.019 14 C -0.155 4.155 15 C -0.140 4.140 16 H 0.135 0.865 17 C -0.153 4.153 18 C -0.154 4.154 19 C -0.199 4.199 20 C 0.231 3.769 21 F -0.187 7.187 22 F -0.189 7.189 23 N -0.093 5.093 24 N -0.173 5.173 25 H 0.076 0.924 26 H 0.027 0.973 27 H 0.050 0.950 28 H 0.233 0.767 29 H 0.139 0.861 30 H 0.129 0.871 31 H 0.109 0.891 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.104 0.896 37 H 0.120 0.880 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 8.968 -28.135 4.192 29.826 hybrid contribution -0.806 1.360 1.042 1.893 sum 8.162 -26.775 5.233 28.477 Atomic orbital electron populations 1.70038 1.07307 1.28030 1.51372 1.25814 0.95818 1.02746 0.94647 0.85533 0.78375 0.78439 0.78878 1.19982 1.19990 1.19367 1.21256 0.92810 0.91524 1.50837 0.93670 1.17381 0.91099 0.88360 0.96757 1.22649 0.98711 0.98869 0.94141 1.23709 0.97378 0.94314 1.05238 1.47497 1.20988 1.19812 1.19465 1.22711 1.03868 0.79029 0.96259 1.21808 1.03680 0.91824 0.98181 1.22788 0.98810 0.95831 0.96531 0.86450 1.22452 1.04023 0.92005 0.96815 1.22505 0.96511 0.97600 0.98774 1.23414 1.01655 0.91925 1.02942 1.22354 0.83039 0.91231 0.80287 1.93009 1.85552 1.96937 1.43235 1.92947 1.58056 1.71265 1.96613 1.78004 1.21578 1.06574 1.03096 1.74971 1.07961 1.09179 1.25224 0.92444 0.97321 0.94970 0.76738 0.86085 0.87142 0.89145 0.90931 0.90309 0.88421 0.88286 0.89608 0.88031 0.88265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.63 13.29 21.45 0.28 -56.34 16 2 C 0.01 0.47 5.46 84.65 0.46 0.93 16 3 Si 0.96 46.30 29.54 68.60 2.03 48.33 16 4 H -0.27 -13.07 7.11 99.48 0.71 -12.37 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.53 -31.84 9.09 25.60 0.23 -31.61 16 8 H 0.04 2.79 7.74 -2.91 -0.02 2.77 16 9 C 0.10 5.73 5.55 29.10 0.16 5.90 16 10 C -0.01 -0.27 6.44 41.60 0.27 0.00 16 11 C -0.06 -2.12 11.49 83.49 0.96 -1.16 16 12 N -0.28 -9.49 3.44 -347.74 -1.20 -10.68 16 13 C 0.10 2.19 6.17 86.38 0.53 2.73 16 14 C -0.12 -2.07 4.26 30.59 0.13 -1.94 16 15 C -0.12 -1.41 2.78 -10.07 -0.03 -1.44 16 16 H 0.12 1.14 8.02 -2.39 -0.02 1.12 16 17 C -0.12 -0.89 6.36 31.67 0.20 -0.69 16 18 C -0.12 -0.67 6.91 31.88 0.22 -0.45 16 19 C -0.16 -1.51 6.40 31.67 0.20 -1.30 16 20 C 0.27 3.82 2.29 31.32 0.07 3.89 16 21 F -0.21 -3.55 17.04 44.97 0.77 -2.78 16 22 F -0.21 -4.01 13.40 44.97 0.60 -3.40 16 23 N -0.11 -4.70 12.92 37.02 0.48 -4.23 16 24 N -0.31 -15.34 12.40 -48.60 -0.60 -15.94 16 25 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 26 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.03 1.77 8.12 -2.39 -0.02 1.75 16 28 H 0.22 6.35 8.06 -2.91 -0.02 6.33 16 29 H 0.12 2.38 5.88 -2.39 -0.01 2.36 16 30 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.09 1.71 8.12 -2.39 -0.02 1.69 16 32 H 0.07 1.46 7.63 -2.39 -0.02 1.44 16 33 H 0.08 0.67 7.85 -2.39 -0.02 0.65 16 34 H 0.10 0.52 8.14 -2.38 -0.02 0.50 16 35 H 0.10 0.32 8.14 -2.38 -0.02 0.30 16 36 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.10 0.91 8.12 -2.38 -0.02 0.89 16 38 H 0.10 0.81 8.11 -2.39 -0.02 0.79 16 Total: -1.00 -75.04 323.20 6.83 -68.21 By element: Atomic # 1 Polarization: 0.92 SS G_CDS: 1.06 Total: 1.98 kcal Atomic # 6 Polarization: -28.55 SS G_CDS: 3.42 Total: -25.14 kcal Atomic # 7 Polarization: -86.16 SS G_CDS: -1.03 Total: -87.19 kcal Atomic # 9 Polarization: -7.55 SS G_CDS: 1.37 Total: -6.18 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -75.04 6.83 -68.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887426638.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.041 kcal (2) G-P(sol) polarization free energy of solvation -75.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds