Wall clock time and date at job start Tue Mar 31 2020 05:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.50698 * 109.47166 * 180.02562 * 9 7 2 11 11 C 1.35352 * 126.75570 * 124.99870 * 10 9 7 12 12 N 1.35312 * 106.17625 * 180.02562 * 11 10 9 13 13 C 1.46503 * 125.86704 * 180.02562 * 12 11 10 14 14 C 1.52996 * 109.46798 * 124.99967 * 13 12 11 15 15 C 1.53005 * 109.47326 * 180.02562 * 14 13 12 16 16 H 1.09002 * 110.00977 * 305.70562 * 15 14 13 17 17 C 1.54263 * 110.02943 * 67.09162 * 15 14 13 18 18 C 1.54964 * 104.16114 * 142.86702 * 17 15 14 19 19 C 1.54896 * 102.77522 * 322.11457 * 18 17 15 20 20 C 1.53866 * 110.03667 * 184.31384 * 15 14 13 21 21 F 1.39905 * 110.03342 * 359.97438 * 20 15 14 22 22 F 1.39901 * 110.03544 * 121.38225 * 20 15 14 23 23 N 1.28709 * 108.26225 * 0.02562 * 12 11 10 24 24 N 1.28627 * 110.18081 * 359.72175 * 23 12 11 25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 27 27 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 28 28 H 1.08000 * 126.91011 * 0.03516 * 11 10 9 29 29 H 1.08990 * 109.47150 * 245.00420 * 13 12 11 30 30 H 1.09004 * 109.47141 * 5.00550 * 13 12 11 31 31 H 1.08999 * 109.47686 * 299.99867 * 14 13 12 32 32 H 1.08999 * 109.47463 * 60.00564 * 14 13 12 33 33 H 1.09004 * 110.49035 * 261.57605 * 17 15 14 34 34 H 1.09001 * 110.48639 * 24.22175 * 17 15 14 35 35 H 1.08990 * 110.76783 * 203.78050 * 18 17 15 36 36 H 1.09003 * 110.87587 * 80.49368 * 18 17 15 37 37 H 1.09000 * 110.48601 * 279.23544 * 19 18 17 38 38 H 1.09002 * 110.59592 * 156.64451 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 6 2.2838 -4.6644 0.8878 12 7 3.3147 -5.4497 0.4985 13 6 3.7548 -6.6797 1.1616 14 6 3.7709 -7.8270 0.1496 15 6 4.2299 -9.1118 0.8422 16 1 5.1880 -8.9477 1.3354 17 6 3.1748 -9.5620 1.8735 18 6 3.1823 -11.1083 1.7732 19 6 3.3700 -11.3521 0.2551 20 6 4.3544 -10.2495 -0.1862 21 9 4.0117 -9.7836 -1.4601 22 9 5.6617 -10.7478 -0.1938 23 7 3.8421 -4.9304 -0.5545 24 7 3.2150 -3.8559 -0.8810 25 1 -0.4850 0.8401 0.0004 26 1 0.6247 -2.5571 0.8897 27 1 0.6240 -2.5568 -0.8903 28 1 1.6343 -4.8201 1.7365 29 1 4.7574 -6.5365 1.5645 30 1 3.0681 -6.9207 1.9731 31 1 2.7683 -7.9703 -0.2533 32 1 4.4576 -7.5861 -0.6619 33 1 3.4604 -9.2426 2.8759 34 1 2.1929 -9.1676 1.6118 35 1 2.2344 -11.5224 2.1166 36 1 4.0137 -11.5302 2.3378 37 1 2.4198 -11.2471 -0.2685 38 1 3.7967 -12.3389 0.0751 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887426639.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:03 Heat of formation + Delta-G solvation = -25.475431 kcal Electronic energy + Delta-G solvation = -22043.723770 eV Core-core repulsion = 18365.293864 eV Total energy + Delta-G solvation = -3678.429907 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.135 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.23155 -47.28257 -42.50354 -38.42506 -35.18954 -33.33032 -31.86584 -31.01279 -28.36513 -27.97828 -27.12238 -24.01558 -23.30565 -21.83164 -21.10624 -20.61336 -19.96888 -17.88389 -17.44958 -16.61955 -16.32468 -16.14124 -15.69538 -15.17020 -14.85219 -14.54033 -14.39907 -14.23800 -14.01795 -13.62301 -13.29999 -12.91836 -12.60503 -12.43741 -12.14414 -12.10530 -11.87058 -11.73742 -11.60506 -11.27924 -11.17554 -11.04466 -10.88079 -10.69315 -10.63594 -10.06520 -9.68105 -9.43448 -9.28146 -8.41927 -8.11848 -5.97708 -3.98199 2.23062 2.74356 3.33873 3.39648 3.42326 3.44544 3.47444 3.53658 3.72525 3.90357 4.35096 4.47502 4.52629 4.60696 4.65499 4.70216 4.79456 4.86023 4.99339 5.01813 5.18764 5.21142 5.37626 5.39130 5.40448 5.46856 5.58976 5.66241 5.81531 5.90715 6.09267 6.33506 7.14160 7.19436 7.53950 7.63810 8.00124 8.38903 9.05013 9.32627 9.64502 11.13423 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.041499 B = 0.002864 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.560174 B = 9775.377533 C = 9991.947326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.897 3.103 4 H -0.287 1.287 5 H -0.278 1.278 6 H -0.275 1.275 7 C -0.504 4.504 8 H 0.058 0.942 9 C 0.092 3.908 10 C 0.034 3.966 11 C -0.084 4.084 12 N -0.305 5.305 13 C 0.125 3.875 14 C -0.125 4.125 15 C -0.128 4.128 16 H 0.106 0.894 17 C -0.124 4.124 18 C -0.122 4.122 19 C -0.163 4.163 20 C 0.285 3.715 21 F -0.193 7.193 22 F -0.198 7.198 23 N -0.107 5.107 24 N -0.261 5.261 25 H 0.262 0.738 26 H 0.036 0.964 27 H 0.039 0.961 28 H 0.181 0.819 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.305 -25.578 7.023 27.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.144 4.144 3 Si 0.725 3.275 4 H -0.213 1.213 5 H -0.203 1.203 6 H -0.201 1.201 7 C -0.543 4.543 8 H 0.077 0.923 9 C 0.054 3.946 10 C -0.103 4.103 11 C -0.232 4.232 12 N -0.101 5.101 13 C 0.003 3.997 14 C -0.163 4.163 15 C -0.148 4.148 16 H 0.124 0.876 17 C -0.161 4.161 18 C -0.160 4.160 19 C -0.201 4.201 20 C 0.249 3.751 21 F -0.174 7.174 22 F -0.179 7.179 23 N -0.086 5.086 24 N -0.128 5.128 25 H 0.071 0.929 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.198 0.802 29 H 0.111 0.889 30 H 0.119 0.881 31 H 0.100 0.900 32 H 0.109 0.891 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.117 0.883 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.287 -25.600 5.921 27.017 hybrid contribution -0.170 0.864 0.771 1.170 sum 6.117 -24.736 6.692 26.345 Atomic orbital electron populations 1.69937 1.05968 1.26864 1.51087 1.24972 0.94878 0.99212 0.95333 0.86572 0.79492 0.82737 0.78738 1.21316 1.20343 1.20081 1.21014 0.93227 0.89799 1.50226 0.92346 1.17719 0.90877 0.87549 0.98474 1.23037 0.97861 0.97677 0.91689 1.23366 0.97596 0.96211 1.06030 1.47138 1.22639 1.19431 1.20874 1.21850 1.02329 0.80609 0.94950 1.21883 1.04296 0.91552 0.98577 1.22749 1.02609 0.93612 0.95852 0.87598 1.22562 0.98939 0.95646 0.98957 1.22482 1.03319 0.96016 0.94175 1.23379 0.99941 0.98283 0.98465 1.21783 0.79163 0.93420 0.80783 1.93036 1.91915 1.89723 1.42758 1.93021 1.39519 1.88712 1.96655 1.78179 1.21605 1.07228 1.01587 1.75083 1.06913 1.07223 1.23614 0.92868 0.94582 0.94315 0.80178 0.88944 0.88059 0.90021 0.89063 0.89761 0.89979 0.89799 0.90391 0.88263 0.88916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.78 13.29 55.43 0.74 -26.05 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 22.25 29.54 -169.99 -5.02 17.23 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.50 -14.68 9.09 -34.44 -0.31 -14.99 16 8 H 0.06 1.74 7.74 -52.49 -0.41 1.33 16 9 C 0.09 2.44 5.55 -29.04 -0.16 2.27 16 10 C 0.03 0.80 6.44 -82.78 -0.53 0.27 16 11 C -0.08 -1.51 11.49 -17.05 -0.20 -1.70 16 12 N -0.31 -5.02 3.44 -61.26 -0.21 -5.23 16 13 C 0.12 1.27 6.30 -4.04 -0.03 1.24 16 14 C -0.12 -1.22 3.81 -26.73 -0.10 -1.32 16 15 C -0.13 -0.91 2.78 -89.50 -0.25 -1.16 16 16 H 0.11 0.67 8.02 -51.93 -0.42 0.25 16 17 C -0.12 -0.59 5.50 -25.03 -0.14 -0.73 16 18 C -0.12 -0.52 6.91 -24.69 -0.17 -0.69 16 19 C -0.16 -0.96 6.40 -25.07 -0.16 -1.12 16 20 C 0.28 2.47 2.53 -25.62 -0.06 2.40 16 21 F -0.19 -2.22 15.46 2.25 0.03 -2.18 16 22 F -0.20 -2.03 17.04 2.25 0.04 -1.99 16 23 N -0.11 -2.22 12.91 60.35 0.78 -1.44 16 24 N -0.26 -6.33 12.40 33.29 0.41 -5.92 16 25 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 26 H 0.04 0.93 8.12 -51.92 -0.42 0.51 16 27 H 0.04 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.18 2.53 8.06 -52.49 -0.42 2.10 16 29 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.10 0.71 7.41 -51.93 -0.38 0.33 16 31 H 0.08 0.85 7.97 -51.93 -0.41 0.44 16 32 H 0.09 1.11 7.76 -51.93 -0.40 0.71 16 33 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.08 0.40 7.77 -51.93 -0.40 0.00 16 35 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 36 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.10 0.55 8.12 -51.93 -0.42 0.13 16 38 H 0.09 0.49 8.11 -51.93 -0.42 0.07 16 LS Contribution 325.76 15.07 4.91 4.91 Total: -1.00 -34.55 325.76 -5.89 -40.44 By element: Atomic # 1 Polarization: -0.44 SS G_CDS: -5.36 Total: -5.80 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: -2.21 Total: -13.98 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: 1.72 Total: -38.63 kcal Atomic # 9 Polarization: -4.24 SS G_CDS: 0.07 Total: -4.17 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.55 -5.89 -40.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887426639.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.967 kcal (2) G-P(sol) polarization free energy of solvation -34.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds