Wall clock time and date at job start Tue Mar 31 2020 05:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.50698 * 109.47166 * 180.02562 * 9 7 2 11 11 C 1.35352 * 126.75570 * 124.99870 * 10 9 7 12 12 N 1.35312 * 106.17625 * 180.02562 * 11 10 9 13 13 C 1.46503 * 125.86704 * 180.02562 * 12 11 10 14 14 C 1.52996 * 109.46798 * 124.99967 * 13 12 11 15 15 C 1.53005 * 109.47326 * 180.02562 * 14 13 12 16 16 H 1.09002 * 110.00977 * 305.70562 * 15 14 13 17 17 C 1.54263 * 110.02943 * 67.09162 * 15 14 13 18 18 C 1.54964 * 104.16114 * 142.86702 * 17 15 14 19 19 C 1.54896 * 102.77522 * 322.11457 * 18 17 15 20 20 C 1.53866 * 110.03667 * 184.31384 * 15 14 13 21 21 F 1.39905 * 110.03342 * 359.97438 * 20 15 14 22 22 F 1.39901 * 110.03544 * 121.38225 * 20 15 14 23 23 N 1.28709 * 108.26225 * 0.02562 * 12 11 10 24 24 N 1.28627 * 110.18081 * 359.72175 * 23 12 11 25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 27 27 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 28 28 H 1.08000 * 126.91011 * 0.03516 * 11 10 9 29 29 H 1.08990 * 109.47150 * 245.00420 * 13 12 11 30 30 H 1.09004 * 109.47141 * 5.00550 * 13 12 11 31 31 H 1.08999 * 109.47686 * 299.99867 * 14 13 12 32 32 H 1.08999 * 109.47463 * 60.00564 * 14 13 12 33 33 H 1.09004 * 110.49035 * 261.57605 * 17 15 14 34 34 H 1.09001 * 110.48639 * 24.22175 * 17 15 14 35 35 H 1.08990 * 110.76783 * 203.78050 * 18 17 15 36 36 H 1.09003 * 110.87587 * 80.49368 * 18 17 15 37 37 H 1.09000 * 110.48601 * 279.23544 * 19 18 17 38 38 H 1.09002 * 110.59592 * 156.64451 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 6 2.2838 -4.6644 0.8878 12 7 3.3147 -5.4497 0.4985 13 6 3.7548 -6.6797 1.1616 14 6 3.7709 -7.8270 0.1496 15 6 4.2299 -9.1118 0.8422 16 1 5.1880 -8.9477 1.3354 17 6 3.1748 -9.5620 1.8735 18 6 3.1823 -11.1083 1.7732 19 6 3.3700 -11.3521 0.2551 20 6 4.3544 -10.2495 -0.1862 21 9 4.0117 -9.7836 -1.4601 22 9 5.6617 -10.7478 -0.1938 23 7 3.8421 -4.9304 -0.5545 24 7 3.2150 -3.8559 -0.8810 25 1 -0.4850 0.8401 0.0004 26 1 0.6247 -2.5571 0.8897 27 1 0.6240 -2.5568 -0.8903 28 1 1.6343 -4.8201 1.7365 29 1 4.7574 -6.5365 1.5645 30 1 3.0681 -6.9207 1.9731 31 1 2.7683 -7.9703 -0.2533 32 1 4.4576 -7.5861 -0.6619 33 1 3.4604 -9.2426 2.8759 34 1 2.1929 -9.1676 1.6118 35 1 2.2344 -11.5224 2.1166 36 1 4.0137 -11.5302 2.3378 37 1 2.4198 -11.2471 -0.2685 38 1 3.7967 -12.3389 0.0751 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887426639.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:03 Heat of formation + Delta-G solvation = -47.091375 kcal Electronic energy + Delta-G solvation = -22044.661108 eV Core-core repulsion = 18365.293864 eV Total energy + Delta-G solvation = -3679.367244 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.135 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.97660 -48.05623 -44.03032 -38.99070 -36.36591 -35.26589 -33.06859 -32.68811 -29.51560 -28.78720 -28.40582 -25.49852 -24.79810 -22.69653 -22.14607 -21.62177 -21.08105 -18.71486 -18.52737 -18.20915 -17.47183 -17.11777 -16.90345 -16.55130 -15.89595 -15.59485 -15.36973 -15.08468 -14.98207 -14.48413 -14.41008 -14.29776 -13.93532 -13.76570 -13.43097 -13.04002 -12.89021 -12.74147 -12.64983 -12.49568 -12.37293 -12.14430 -11.97025 -11.74146 -11.65659 -11.59357 -11.55320 -11.34277 -10.82218 -10.57495 -9.84722 -8.18312 -6.26892 0.78005 1.40357 1.44109 1.51552 1.58905 1.78553 2.44964 2.72096 2.95057 3.14423 3.17131 3.29739 3.56239 3.78552 3.81292 4.02071 4.09711 4.20895 4.25939 4.31820 4.33490 4.40334 4.49621 4.50685 4.68726 4.80797 4.86826 5.01867 5.06585 5.11194 5.17702 5.31711 5.35160 5.46214 5.55765 5.77389 5.86895 6.23670 6.81204 7.39634 7.73550 8.92437 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.041499 B = 0.002864 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.560174 B = 9775.377533 C = 9991.947326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.009 3.991 3 Si 0.961 3.039 4 H -0.275 1.275 5 H -0.267 1.267 6 H -0.277 1.277 7 C -0.526 4.526 8 H 0.043 0.957 9 C 0.103 3.897 10 C -0.011 4.011 11 C -0.048 4.048 12 N -0.285 5.285 13 C 0.113 3.887 14 C -0.118 4.118 15 C -0.120 4.120 16 H 0.117 0.883 17 C -0.120 4.120 18 C -0.116 4.116 19 C -0.161 4.161 20 C 0.266 3.734 21 F -0.216 7.216 22 F -0.211 7.211 23 N -0.124 5.124 24 N -0.312 5.312 25 H 0.266 0.734 26 H 0.036 0.964 27 H 0.006 0.994 28 H 0.229 0.771 29 H 0.112 0.888 30 H 0.148 0.852 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.108 0.892 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.463 -26.855 9.742 29.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.189 4.189 3 Si 0.786 3.214 4 H -0.200 1.200 5 H -0.192 1.192 6 H -0.203 1.203 7 C -0.564 4.564 8 H 0.062 0.938 9 C 0.064 3.936 10 C -0.150 4.150 11 C -0.199 4.199 12 N -0.081 5.081 13 C -0.006 4.006 14 C -0.156 4.156 15 C -0.140 4.140 16 H 0.135 0.865 17 C -0.157 4.157 18 C -0.154 4.154 19 C -0.199 4.199 20 C 0.230 3.770 21 F -0.198 7.198 22 F -0.192 7.192 23 N -0.102 5.102 24 N -0.179 5.179 25 H 0.075 0.925 26 H 0.055 0.945 27 H 0.024 0.976 28 H 0.246 0.754 29 H 0.130 0.870 30 H 0.166 0.834 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.127 0.873 34 H 0.104 0.896 35 H 0.119 0.881 36 H 0.103 0.897 37 H 0.119 0.881 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.472 -26.916 8.640 29.000 hybrid contribution -0.188 1.107 -0.070 1.125 sum 6.284 -25.808 8.570 27.911 Atomic orbital electron populations 1.70030 1.07229 1.27986 1.51428 1.25785 0.95798 1.02633 0.94714 0.85570 0.78410 0.78640 0.78828 1.20002 1.19232 1.20287 1.21265 0.92761 0.91651 1.50726 0.93835 1.17374 0.91092 0.88303 0.96799 1.22710 0.98721 0.99184 0.94355 1.23813 0.97006 0.93880 1.05168 1.47596 1.21095 1.20106 1.19274 1.22498 1.04722 0.77850 0.95529 1.21754 1.03030 0.92896 0.97926 1.22739 1.04097 0.91452 0.95695 0.86527 1.22627 0.98107 0.95903 0.99098 1.22509 1.04533 0.95789 0.92532 1.23427 0.99081 0.97406 0.99978 1.22424 0.79191 0.95186 0.80158 1.92989 1.92076 1.90141 1.44553 1.92990 1.40595 1.88955 1.96651 1.78059 1.21985 1.06791 1.03400 1.74988 1.08219 1.09192 1.25473 0.92463 0.94548 0.97605 0.75443 0.86951 0.83407 0.90909 0.92309 0.87338 0.89611 0.88128 0.89673 0.88094 0.88512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.80 13.29 21.45 0.28 -55.51 16 2 C 0.01 0.52 5.46 84.66 0.46 0.99 16 3 Si 0.96 45.87 29.54 68.60 2.03 47.90 16 4 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 6 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 7 C -0.53 -31.37 9.09 25.60 0.23 -31.14 16 8 H 0.04 2.66 7.74 -2.91 -0.02 2.64 16 9 C 0.10 5.60 5.55 29.10 0.16 5.76 16 10 C -0.01 -0.53 6.44 41.60 0.27 -0.26 16 11 C -0.05 -1.64 11.49 83.49 0.96 -0.68 16 12 N -0.29 -8.79 3.44 -347.74 -1.20 -9.99 16 13 C 0.11 1.89 6.30 86.38 0.54 2.44 16 14 C -0.12 -2.10 3.81 30.59 0.12 -1.98 16 15 C -0.12 -1.41 2.78 -10.07 -0.03 -1.44 16 16 H 0.12 1.13 8.02 -2.39 -0.02 1.11 16 17 C -0.12 -0.65 5.50 31.69 0.17 -0.47 16 18 C -0.12 -0.58 6.91 31.91 0.22 -0.36 16 19 C -0.16 -1.61 6.40 31.67 0.20 -1.40 16 20 C 0.27 4.36 2.53 31.32 0.08 4.44 16 21 F -0.22 -5.07 15.46 44.97 0.70 -4.38 16 22 F -0.21 -4.20 17.04 44.97 0.77 -3.43 16 23 N -0.12 -5.12 12.91 37.02 0.48 -4.64 16 24 N -0.31 -15.56 12.40 -48.60 -0.60 -16.16 16 25 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 26 H 0.04 1.92 8.12 -2.38 -0.02 1.90 16 27 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.23 5.30 8.06 -2.91 -0.02 5.27 16 29 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.15 1.19 7.41 -2.38 -0.02 1.17 16 31 H 0.07 1.43 7.97 -2.39 -0.02 1.41 16 32 H 0.06 1.44 7.76 -2.39 -0.02 1.42 16 33 H 0.11 0.13 8.14 -2.38 -0.02 0.12 16 34 H 0.09 0.45 7.77 -2.39 -0.02 0.43 16 35 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 36 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 37 H 0.10 0.97 8.12 -2.39 -0.02 0.95 16 38 H 0.10 0.87 8.11 -2.39 -0.02 0.85 16 Total: -1.00 -79.14 325.76 6.90 -72.24 By element: Atomic # 1 Polarization: -2.98 SS G_CDS: 1.06 Total: -1.92 kcal Atomic # 6 Polarization: -27.51 SS G_CDS: 3.39 Total: -24.11 kcal Atomic # 7 Polarization: -85.26 SS G_CDS: -1.04 Total: -86.30 kcal Atomic # 9 Polarization: -9.27 SS G_CDS: 1.46 Total: -7.81 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -79.14 6.90 -72.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887426639.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.152 kcal (2) G-P(sol) polarization free energy of solvation -79.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds