Wall clock time and date at job start Tue Mar 31 2020 06:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86794 * 120.00213 * 2 1 4 4 H 1.48499 * 109.47416 * 273.96665 * 3 2 1 5 5 H 1.48502 * 109.47396 * 153.96541 * 3 2 1 6 6 H 1.48499 * 109.47192 * 33.96541 * 3 2 1 7 7 C 1.38816 * 119.99724 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00080 * 346.39927 * 7 2 1 9 9 N 1.36940 * 119.99605 * 166.40464 * 7 2 1 10 10 C 1.46500 * 120.00209 * 305.96735 * 9 7 2 11 11 C 1.53001 * 117.49709 * 2.77477 * 10 9 7 12 12 C 1.52998 * 117.49991 * 294.11550 * 10 9 7 13 13 C 1.46508 * 119.99793 * 125.97387 * 9 7 2 14 14 H 1.09001 * 109.46305 * 179.97438 * 13 9 7 15 15 C 1.52993 * 109.46520 * 299.96923 * 13 9 7 16 16 C 1.53008 * 109.46332 * 180.18191 * 15 13 9 17 17 C 1.52961 * 109.44945 * 300.20621 * 16 15 13 18 18 C 1.52955 * 109.82609 * 59.64953 * 17 16 15 19 19 C 1.52994 * 109.46530 * 59.99538 * 13 9 7 20 20 H 1.08999 * 109.46989 * 59.83648 * 19 13 9 21 21 F 1.39895 * 109.47415 * 299.83394 * 19 13 9 22 22 O 1.43693 * 109.42693 * 179.80686 * 17 16 15 23 23 C 1.44800 * 104.79540 * 95.47701 * 22 17 16 24 24 C 1.54916 * 101.72433 * 36.07010 * 23 22 17 25 25 O 1.43314 * 109.62337 * 299.11856 * 17 16 15 26 26 H 0.96998 * 119.99770 * 359.97438 * 1 2 3 27 27 H 1.09004 * 115.55067 * 148.44022 * 10 9 7 28 28 H 1.09004 * 117.49821 * 359.97438 * 11 10 9 29 29 H 1.09003 * 117.49773 * 145.02013 * 11 10 9 30 30 H 1.08996 * 117.49609 * 214.97984 * 12 10 9 31 31 H 1.09003 * 117.49761 * 359.96777 * 12 10 9 32 32 H 1.09011 * 109.47271 * 300.17365 * 15 13 9 33 33 H 1.08997 * 109.47686 * 60.17936 * 15 13 9 34 34 H 1.09006 * 109.47807 * 180.21387 * 16 15 13 35 35 H 1.09004 * 109.47976 * 60.20102 * 16 15 13 36 36 H 1.09002 * 109.47616 * 180.37567 * 18 17 16 37 37 H 1.08999 * 109.47843 * 60.36434 * 18 17 16 38 38 H 1.08996 * 110.97822 * 277.95415 * 23 22 17 39 39 H 1.09007 * 110.97780 * 154.17350 * 23 22 17 40 40 H 1.09002 * 110.69264 * 206.07971 * 24 23 22 41 41 H 1.08996 * 110.69459 * 82.87719 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4139 2.0948 -1.3967 5 1 3.5872 1.4173 0.6145 6 1 1.4921 2.6270 0.7822 7 6 2.0102 -1.2022 -0.0005 8 1 1.4929 -2.1244 0.2190 9 7 3.3508 -1.2187 -0.2793 10 6 3.8499 -0.6078 -1.5138 11 6 2.8319 0.0894 -2.4187 12 6 3.4369 -1.2527 -2.8383 13 6 4.2860 -1.8474 0.6569 14 1 5.3008 -1.7633 0.2681 15 6 4.1996 -1.1445 2.0131 16 6 5.1796 -1.7982 2.9895 17 6 4.8252 -3.2772 3.1531 18 6 4.9041 -3.9825 1.7982 19 6 3.9248 -3.3247 0.8235 20 1 3.9838 -3.8244 -0.1434 21 9 2.6235 -3.4329 1.3257 22 8 5.7485 -3.8917 4.0667 23 6 5.0822 -3.8474 5.3515 24 6 3.6050 -4.0825 4.9483 25 8 3.4992 -3.3986 3.6831 26 1 -0.4850 0.8400 0.0004 27 1 4.8490 -0.1760 -1.4542 28 1 1.7909 0.0931 -2.0956 29 1 3.1615 0.9795 -2.9546 30 1 4.1641 -1.2449 -3.6501 31 1 2.7942 -2.1319 -2.7912 32 1 4.4542 -0.0913 1.8934 33 1 3.1856 -1.2311 2.4033 34 1 5.1154 -1.3000 3.9569 35 1 6.1941 -1.7084 2.6011 36 1 4.6441 -5.0340 1.9201 37 1 5.9174 -3.9019 1.4049 38 1 5.2077 -2.8727 5.8228 39 1 5.4399 -4.6438 6.0043 40 1 2.9305 -3.6414 5.6821 41 1 3.4031 -5.1470 4.8289 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891795573.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:35 Heat of formation + Delta-G solvation = -76.844020 kcal Electronic energy + Delta-G solvation = -25097.447470 eV Core-core repulsion = 21507.957608 eV Total energy + Delta-G solvation = -3589.489862 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -46.51110 -40.48180 -37.58640 -35.68393 -34.76555 -32.58280 -31.44922 -30.19613 -29.20580 -26.77122 -24.11712 -23.23506 -22.35010 -21.64489 -21.45027 -19.70964 -19.06816 -17.12694 -16.92836 -16.44645 -15.75875 -15.45163 -15.23829 -14.45298 -14.42202 -14.01259 -13.72925 -13.61305 -13.47558 -12.97440 -12.73670 -12.60999 -12.29383 -12.14982 -11.94629 -11.69471 -11.36861 -11.23585 -10.94796 -10.73242 -10.66177 -10.51148 -10.24363 -10.18131 -10.01311 -9.80923 -9.61464 -9.26627 -9.04432 -9.02698 -8.30345 -6.40390 -5.86494 -3.55494 3.43486 3.49199 3.53655 3.59121 4.09685 4.57911 4.61827 4.71064 4.83977 4.88621 4.90654 5.00442 5.18862 5.32915 5.38359 5.47513 5.54287 5.59036 5.66864 5.72687 5.82495 5.85902 5.89586 5.96487 6.01354 6.05878 6.10977 6.19599 6.25417 6.48405 6.52411 6.61570 6.76285 6.87735 7.03894 7.26820 7.33236 7.33714 8.20669 8.69818 9.12224 9.76404 10.20126 11.22434 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.024047 B = 0.006503 C = 0.006115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.111784 B = 4304.689907 C = 4577.534877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.053 3.947 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.268 1.268 6 H -0.308 1.308 7 C -0.274 4.274 8 H 0.092 0.908 9 N -0.568 5.568 10 C 0.109 3.891 11 C -0.199 4.199 12 C -0.213 4.213 13 C 0.156 3.844 14 H 0.064 0.936 15 C -0.124 4.124 16 C -0.133 4.133 17 C 0.261 3.739 18 C -0.147 4.147 19 C 0.098 3.902 20 H 0.074 0.926 21 F -0.183 7.183 22 O -0.378 6.378 23 C 0.016 3.984 24 C 0.017 3.983 25 O -0.346 6.346 26 H 0.262 0.738 27 H 0.086 0.914 28 H 0.121 0.879 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.103 0.897 40 H 0.096 0.904 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.881 -6.197 6.663 14.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.148 4.148 3 Si 0.706 3.294 4 H -0.199 1.199 5 H -0.193 1.193 6 H -0.237 1.237 7 C -0.403 4.403 8 H 0.109 0.891 9 N -0.287 5.287 10 C 0.001 3.999 11 C -0.237 4.237 12 C -0.254 4.254 13 C 0.048 3.952 14 H 0.082 0.918 15 C -0.163 4.163 16 C -0.171 4.171 17 C 0.184 3.816 18 C -0.186 4.186 19 C 0.060 3.940 20 H 0.091 0.909 21 F -0.163 7.163 22 O -0.299 6.299 23 C -0.061 4.061 24 C -0.060 4.060 25 O -0.266 6.266 26 H 0.072 0.928 27 H 0.104 0.896 28 H 0.139 0.861 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.108 0.892 32 H 0.081 0.919 33 H 0.109 0.891 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.108 0.892 38 H 0.091 0.909 39 H 0.121 0.879 40 H 0.114 0.886 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 11.697 -6.099 6.530 14.719 hybrid contribution 0.321 1.019 0.198 1.086 sum 12.018 -5.081 6.727 14.680 Atomic orbital electron populations 1.69845 1.06182 1.26623 1.51484 1.25870 0.94969 0.98180 0.95817 0.87005 0.80450 0.84135 0.77762 1.19909 1.19276 1.23681 1.18954 0.81802 0.94089 1.45427 0.89064 1.43636 1.04003 1.65758 1.15287 1.21313 0.95040 0.99639 0.83897 1.23568 1.02027 0.94166 1.03954 1.23387 1.04367 0.97392 1.00228 1.20930 0.93034 0.90527 0.90676 0.91817 1.21863 1.00785 0.98921 0.94691 1.22153 1.00424 0.93560 1.00994 1.23303 0.76146 0.92918 0.89209 1.22499 1.01453 1.00583 0.94073 1.21812 0.78858 0.98441 0.94917 0.90852 1.92859 1.37698 1.97009 1.88779 1.89203 1.41399 1.81413 1.17887 1.24338 0.91803 1.02721 0.87211 1.24160 0.96551 0.98428 0.86879 1.89182 1.25671 1.77941 1.33853 0.92834 0.89602 0.86062 0.90761 0.91118 0.89186 0.91864 0.89087 0.91783 0.90895 0.90513 0.89221 0.90905 0.87887 0.88589 0.91080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.40 13.97 55.49 0.78 -26.62 16 2 C 0.05 1.50 3.81 -17.43 -0.07 1.43 16 3 Si 0.88 22.13 24.48 -169.99 -4.16 17.97 16 4 H -0.27 -6.59 5.62 56.52 0.32 -6.27 16 5 H -0.27 -6.58 6.20 56.52 0.35 -6.23 16 6 H -0.31 -8.08 7.11 56.52 0.40 -7.68 16 7 C -0.27 -7.48 7.50 -15.06 -0.11 -7.60 16 8 H 0.09 2.81 6.18 -52.49 -0.32 2.49 16 9 N -0.57 -13.08 2.04 -158.15 -0.32 -13.40 16 10 C 0.11 2.30 5.00 -67.93 -0.34 1.96 16 11 C -0.20 -4.39 6.49 -26.69 -0.17 -4.56 16 12 C -0.21 -4.21 10.37 -26.69 -0.28 -4.49 16 13 C 0.16 3.05 2.57 -67.93 -0.17 2.87 16 14 H 0.06 1.09 7.93 -51.93 -0.41 0.68 16 15 C -0.12 -2.42 4.91 -26.73 -0.13 -2.55 16 16 C -0.13 -2.11 5.28 -26.75 -0.14 -2.25 16 17 C 0.26 4.13 1.02 -26.77 -0.03 4.10 16 18 C -0.15 -2.28 5.20 -26.74 -0.14 -2.42 16 19 C 0.10 1.84 3.68 -26.72 -0.10 1.74 16 20 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 21 F -0.18 -4.20 12.10 2.25 0.03 -4.17 16 22 O -0.38 -5.39 10.99 -59.04 -0.65 -6.04 16 23 C 0.02 0.17 7.91 38.17 0.30 0.48 16 24 C 0.02 0.21 8.07 38.17 0.31 0.52 16 25 O -0.35 -6.05 8.52 -59.04 -0.50 -6.55 16 26 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 27 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 28 H 0.12 3.12 4.94 -51.93 -0.26 2.87 16 29 H 0.07 1.50 7.71 -51.93 -0.40 1.10 16 30 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.09 1.92 8.14 -51.93 -0.42 1.49 16 32 H 0.06 1.28 7.24 -51.92 -0.38 0.91 16 33 H 0.09 2.12 6.89 -51.93 -0.36 1.76 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 309.72 15.07 4.67 4.67 Total: -1.00 -31.62 309.72 -7.71 -39.32 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -6.47 Total: 5.59 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: -1.07 Total: -10.76 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: 0.45 Total: -40.02 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: -1.15 Total: -12.59 kcal Atomic # 9 Polarization: -4.20 SS G_CDS: 0.03 Total: -4.17 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.16 Total: 17.97 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.62 -7.71 -39.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891795573.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.520 kcal (2) G-P(sol) polarization free energy of solvation -31.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds