Wall clock time and date at job start Tue Mar 31 2020 06:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86794 * 120.00213 * 2 1 4 4 H 1.48499 * 109.47416 * 273.96665 * 3 2 1 5 5 H 1.48502 * 109.47396 * 153.96541 * 3 2 1 6 6 H 1.48499 * 109.47192 * 33.96541 * 3 2 1 7 7 C 1.38816 * 119.99724 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00080 * 346.39927 * 7 2 1 9 9 N 1.36940 * 119.99605 * 166.40464 * 7 2 1 10 10 C 1.46500 * 120.00209 * 305.96735 * 9 7 2 11 11 C 1.53001 * 117.49709 * 2.77477 * 10 9 7 12 12 C 1.52998 * 117.49991 * 294.11550 * 10 9 7 13 13 C 1.46508 * 119.99793 * 125.97387 * 9 7 2 14 14 H 1.09001 * 109.46305 * 179.97438 * 13 9 7 15 15 C 1.52993 * 109.46520 * 299.96923 * 13 9 7 16 16 C 1.53008 * 109.46332 * 180.18191 * 15 13 9 17 17 C 1.52961 * 109.44945 * 300.20621 * 16 15 13 18 18 C 1.52955 * 109.82609 * 59.64953 * 17 16 15 19 19 C 1.52994 * 109.46530 * 59.99538 * 13 9 7 20 20 H 1.08999 * 109.46989 * 59.83648 * 19 13 9 21 21 F 1.39895 * 109.47415 * 299.83394 * 19 13 9 22 22 O 1.43693 * 109.42693 * 179.80686 * 17 16 15 23 23 C 1.44800 * 104.79540 * 95.47701 * 22 17 16 24 24 C 1.54916 * 101.72433 * 36.07010 * 23 22 17 25 25 O 1.43314 * 109.62337 * 299.11856 * 17 16 15 26 26 H 0.96998 * 119.99770 * 359.97438 * 1 2 3 27 27 H 1.09004 * 115.55067 * 148.44022 * 10 9 7 28 28 H 1.09004 * 117.49821 * 359.97438 * 11 10 9 29 29 H 1.09003 * 117.49773 * 145.02013 * 11 10 9 30 30 H 1.08996 * 117.49609 * 214.97984 * 12 10 9 31 31 H 1.09003 * 117.49761 * 359.96777 * 12 10 9 32 32 H 1.09011 * 109.47271 * 300.17365 * 15 13 9 33 33 H 1.08997 * 109.47686 * 60.17936 * 15 13 9 34 34 H 1.09006 * 109.47807 * 180.21387 * 16 15 13 35 35 H 1.09004 * 109.47976 * 60.20102 * 16 15 13 36 36 H 1.09002 * 109.47616 * 180.37567 * 18 17 16 37 37 H 1.08999 * 109.47843 * 60.36434 * 18 17 16 38 38 H 1.08996 * 110.97822 * 277.95415 * 23 22 17 39 39 H 1.09007 * 110.97780 * 154.17350 * 23 22 17 40 40 H 1.09002 * 110.69264 * 206.07971 * 24 23 22 41 41 H 1.08996 * 110.69459 * 82.87719 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4139 2.0948 -1.3967 5 1 3.5872 1.4173 0.6145 6 1 1.4921 2.6270 0.7822 7 6 2.0102 -1.2022 -0.0005 8 1 1.4929 -2.1244 0.2190 9 7 3.3508 -1.2187 -0.2793 10 6 3.8499 -0.6078 -1.5138 11 6 2.8319 0.0894 -2.4187 12 6 3.4369 -1.2527 -2.8383 13 6 4.2860 -1.8474 0.6569 14 1 5.3008 -1.7633 0.2681 15 6 4.1996 -1.1445 2.0131 16 6 5.1796 -1.7982 2.9895 17 6 4.8252 -3.2772 3.1531 18 6 4.9041 -3.9825 1.7982 19 6 3.9248 -3.3247 0.8235 20 1 3.9838 -3.8244 -0.1434 21 9 2.6235 -3.4329 1.3257 22 8 5.7485 -3.8917 4.0667 23 6 5.0822 -3.8474 5.3515 24 6 3.6050 -4.0825 4.9483 25 8 3.4992 -3.3986 3.6831 26 1 -0.4850 0.8400 0.0004 27 1 4.8490 -0.1760 -1.4542 28 1 1.7909 0.0931 -2.0956 29 1 3.1615 0.9795 -2.9546 30 1 4.1641 -1.2449 -3.6501 31 1 2.7942 -2.1319 -2.7912 32 1 4.4542 -0.0913 1.8934 33 1 3.1856 -1.2311 2.4033 34 1 5.1154 -1.3000 3.9569 35 1 6.1941 -1.7084 2.6011 36 1 4.6441 -5.0340 1.9201 37 1 5.9174 -3.9019 1.4049 38 1 5.2077 -2.8727 5.8228 39 1 5.4399 -4.6438 6.0043 40 1 2.9305 -3.6414 5.6821 41 1 3.4031 -5.1470 4.8289 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891795573.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:34 Heat of formation + Delta-G solvation = -97.762820 kcal Electronic energy + Delta-G solvation = -25098.354578 eV Core-core repulsion = 21507.957608 eV Total energy + Delta-G solvation = -3590.396969 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.16301 -41.59980 -39.27372 -37.11726 -35.89633 -34.44284 -33.23718 -31.55995 -30.43466 -28.24757 -26.01260 -24.25150 -23.70269 -23.24520 -22.89073 -21.49001 -20.49374 -18.83381 -18.22467 -17.70357 -17.24297 -16.73553 -16.63194 -16.33255 -16.04422 -15.33638 -15.23689 -15.08424 -14.84233 -14.56321 -14.22245 -13.97235 -13.73577 -13.51303 -13.46421 -13.04479 -12.97158 -12.85065 -12.49534 -12.30918 -12.16237 -12.14605 -11.92603 -11.75588 -11.55550 -11.27734 -11.04703 -11.00119 -10.79410 -10.41897 -10.29231 -8.32808 -8.00621 -5.71768 1.42345 1.45715 1.57273 2.45195 2.52241 3.00529 3.07532 3.11126 3.39045 3.61693 3.67516 3.77371 4.01689 4.09776 4.12267 4.21515 4.25879 4.30302 4.32253 4.35531 4.46521 4.52285 4.56184 4.57607 4.73728 4.74173 4.82387 4.93606 4.95252 5.03205 5.05716 5.11233 5.23280 5.36385 5.38627 5.58403 5.66533 6.08014 6.25125 6.54611 7.17830 7.67618 8.14499 9.08513 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.024047 B = 0.006503 C = 0.006115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.111784 B = 4304.689907 C = 4577.534877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C 0.001 3.999 3 Si 0.936 3.064 4 H -0.253 1.253 5 H -0.252 1.252 6 H -0.327 1.327 7 C -0.249 4.249 8 H 0.042 0.958 9 N -0.581 5.581 10 C 0.101 3.899 11 C -0.219 4.219 12 C -0.190 4.190 13 C 0.150 3.850 14 H 0.104 0.896 15 C -0.115 4.115 16 C -0.125 4.125 17 C 0.258 3.742 18 C -0.139 4.139 19 C 0.090 3.910 20 H 0.077 0.923 21 F -0.214 7.214 22 O -0.382 6.382 23 C 0.018 3.982 24 C 0.006 3.994 25 O -0.388 6.388 26 H 0.258 0.742 27 H 0.125 0.875 28 H 0.078 0.922 29 H 0.097 0.903 30 H 0.113 0.887 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.041 0.959 34 H 0.070 0.930 35 H 0.101 0.899 36 H 0.079 0.921 37 H 0.121 0.879 38 H 0.083 0.917 39 H 0.137 0.863 40 H 0.107 0.893 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.057 -6.210 6.663 18.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.195 4.195 3 Si 0.763 3.237 4 H -0.177 1.177 5 H -0.176 1.176 6 H -0.257 1.257 7 C -0.379 4.379 8 H 0.060 0.940 9 N -0.300 5.300 10 C -0.006 4.006 11 C -0.257 4.257 12 C -0.230 4.230 13 C 0.044 3.956 14 H 0.121 0.879 15 C -0.154 4.154 16 C -0.164 4.164 17 C 0.182 3.818 18 C -0.177 4.177 19 C 0.052 3.948 20 H 0.095 0.905 21 F -0.195 7.195 22 O -0.303 6.303 23 C -0.058 4.058 24 C -0.071 4.071 25 O -0.309 6.309 26 H 0.067 0.933 27 H 0.142 0.858 28 H 0.096 0.904 29 H 0.116 0.884 30 H 0.131 0.869 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.088 0.912 35 H 0.119 0.881 36 H 0.098 0.902 37 H 0.139 0.861 38 H 0.101 0.899 39 H 0.155 0.845 40 H 0.125 0.875 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 15.923 -6.139 6.528 18.271 hybrid contribution -1.009 0.875 0.223 1.354 sum 14.913 -5.264 6.751 17.196 Atomic orbital electron populations 1.69994 1.08159 1.27035 1.54850 1.26434 0.95329 1.01487 0.96220 0.86066 0.79406 0.79725 0.78476 1.17742 1.17560 1.25711 1.18544 0.83867 0.92119 1.43356 0.94001 1.43743 1.02913 1.66285 1.17081 1.21652 0.96097 0.99626 0.83189 1.23471 1.00047 0.96480 1.05701 1.23344 1.03882 0.95034 1.00761 1.21200 0.93978 0.90414 0.90030 0.87854 1.21677 0.99168 0.98926 0.95624 1.22097 1.00507 0.93449 1.00322 1.23270 0.75999 0.92870 0.89707 1.22431 1.01832 1.00199 0.93278 1.22023 0.78124 0.98481 0.96171 0.90526 1.92805 1.40358 1.97132 1.89245 1.89175 1.41063 1.81161 1.18867 1.24565 0.90199 1.04641 0.86353 1.24434 0.98356 0.98625 0.85638 1.89171 1.27082 1.78676 1.35960 0.93318 0.85762 0.90381 0.88434 0.86851 0.91716 0.92643 0.93976 0.91174 0.88058 0.90247 0.86054 0.89896 0.84545 0.87478 0.90418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.58 13.97 21.65 0.30 -61.28 16 2 C 0.00 0.08 3.81 84.86 0.32 0.41 16 3 Si 0.94 46.39 24.48 68.60 1.68 48.07 16 4 H -0.25 -11.56 5.62 99.48 0.56 -11.00 16 5 H -0.25 -11.65 6.20 99.48 0.62 -11.04 16 6 H -0.33 -17.11 7.11 99.48 0.71 -16.41 16 7 C -0.25 -14.11 7.50 84.03 0.63 -13.48 16 8 H 0.04 2.79 6.18 -2.91 -0.02 2.77 16 9 N -0.58 -26.28 2.04 -654.25 -1.33 -27.61 16 10 C 0.10 3.97 5.00 44.99 0.23 4.19 16 11 C -0.22 -9.24 6.49 30.62 0.20 -9.04 16 12 C -0.19 -7.00 10.37 30.62 0.32 -6.68 16 13 C 0.15 5.59 2.57 44.99 0.12 5.70 16 14 H 0.10 3.06 7.93 -2.39 -0.02 3.04 16 15 C -0.11 -4.38 4.91 30.59 0.15 -4.23 16 16 C -0.13 -3.65 5.28 30.58 0.16 -3.49 16 17 C 0.26 7.64 1.02 30.57 0.03 7.67 16 18 C -0.14 -3.96 5.20 30.59 0.16 -3.80 16 19 C 0.09 3.30 3.68 30.60 0.11 3.41 16 20 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 21 F -0.21 -10.30 12.10 44.97 0.54 -9.75 16 22 O -0.38 -9.61 10.99 -126.22 -1.39 -10.99 16 23 C 0.02 0.34 7.91 72.64 0.57 0.92 16 24 C 0.01 0.13 8.07 72.64 0.59 0.72 16 25 O -0.39 -13.52 8.52 -126.22 -1.07 -14.60 16 26 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 27 H 0.12 4.01 8.14 -2.38 -0.02 3.99 16 28 H 0.08 4.07 4.94 -2.39 -0.01 4.05 16 29 H 0.10 3.62 7.71 -2.39 -0.02 3.61 16 30 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 31 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 32 H 0.05 2.15 7.24 -2.38 -0.02 2.14 16 33 H 0.04 2.01 6.89 -2.39 -0.02 2.00 16 34 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 35 H 0.10 2.39 8.14 -2.38 -0.02 2.37 16 36 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 38 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.14 1.66 8.14 -2.38 -0.02 1.64 16 40 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -74.05 309.72 3.09 -70.96 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: 0.78 Total: 22.90 kcal Atomic # 6 Polarization: -21.29 SS G_CDS: 3.59 Total: -17.70 kcal Atomic # 7 Polarization: -87.86 SS G_CDS: -1.03 Total: -88.89 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -2.46 Total: -25.59 kcal Atomic # 9 Polarization: -10.30 SS G_CDS: 0.54 Total: -9.75 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 1.68 Total: 48.07 kcal Total: -74.05 3.09 -70.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891795573.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.804 kcal (2) G-P(sol) polarization free energy of solvation -74.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds