Wall clock time and date at job start Tue Mar 31 2020 06:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86793 * 119.99740 * 2 1 4 4 H 1.48501 * 109.47288 * 239.99375 * 3 2 1 5 5 H 1.48499 * 109.47300 * 359.97438 * 3 2 1 6 6 H 1.48510 * 109.47171 * 119.99863 * 3 2 1 7 7 C 1.38809 * 120.00087 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00094 * 166.62143 * 7 2 1 9 9 N 1.36934 * 119.99995 * 346.90364 * 7 2 1 10 10 C 1.46503 * 119.99967 * 307.12002 * 9 7 2 11 11 C 1.53000 * 117.49778 * 2.07086 * 10 9 7 12 12 C 1.52999 * 117.49866 * 293.40934 * 10 9 7 13 13 C 1.46507 * 120.00084 * 127.12150 * 9 7 2 14 14 H 1.09003 * 109.46258 * 180.02562 * 13 9 7 15 15 C 1.52999 * 109.46139 * 60.05151 * 13 9 7 16 16 C 1.53015 * 109.46194 * 179.84314 * 15 13 9 17 17 C 1.52967 * 109.42941 * 59.78987 * 16 15 13 18 18 C 1.52952 * 109.82177 * 300.29730 * 17 16 15 19 19 C 1.52988 * 109.46160 * 299.99872 * 13 9 7 20 20 H 1.08999 * 109.47261 * 300.14740 * 19 13 9 21 21 F 1.39898 * 109.47170 * 60.14870 * 19 13 9 22 22 O 1.43708 * 109.39262 * 60.39904 * 17 16 15 23 23 C 1.44793 * 104.78769 * 95.46162 * 22 17 16 24 24 C 1.54915 * 101.72611 * 36.07767 * 23 22 17 25 25 O 1.43305 * 109.64796 * 179.70885 * 17 16 15 26 26 H 0.96997 * 120.00345 * 5.03781 * 1 2 3 27 27 H 1.09003 * 115.54561 * 147.74109 * 10 9 7 28 28 H 1.09004 * 117.49574 * 359.97438 * 11 10 9 29 29 H 1.08996 * 117.49808 * 145.01823 * 11 10 9 30 30 H 1.09001 * 117.49725 * 214.97792 * 12 10 9 31 31 H 1.09000 * 117.49989 * 359.97421 * 12 10 9 32 32 H 1.08993 * 109.46878 * 299.84031 * 15 13 9 33 33 H 1.09004 * 109.46885 * 59.84548 * 15 13 9 34 34 H 1.09003 * 109.47672 * 299.80716 * 16 15 13 35 35 H 1.09001 * 109.48553 * 179.78235 * 16 15 13 36 36 H 1.09007 * 109.47752 * 299.70298 * 18 17 16 37 37 H 1.08994 * 109.47982 * 179.68142 * 18 17 16 38 38 H 1.08995 * 110.97887 * 277.96576 * 23 22 17 39 39 H 1.09005 * 110.97888 * 154.18219 * 23 22 17 40 40 H 1.08999 * 110.69955 * 206.08514 * 24 23 22 41 41 H 1.08993 * 110.69595 * 82.88053 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0683 -1.2149 -0.2159 9 7 1.3523 -2.3725 0.2698 10 6 0.5444 -2.4956 1.4857 11 6 0.4363 -1.2659 2.3895 12 6 1.2787 -2.4666 2.8277 13 6 1.4564 -3.5015 -0.6581 14 1 0.8694 -4.3382 -0.2792 15 6 2.9216 -3.9231 -0.7857 16 6 3.0298 -5.1048 -1.7518 17 6 2.4914 -4.6921 -3.1228 18 6 1.0281 -4.2648 -2.9983 19 6 0.9229 -3.0846 -2.0300 20 1 -0.1203 -2.7822 -1.9377 21 9 1.6778 -2.0125 -2.5178 22 8 3.2682 -3.5944 -3.6298 23 6 4.2637 -4.2090 -4.4828 24 6 3.4634 -5.3784 -5.1088 25 8 2.5968 -5.7936 -4.0334 26 1 -0.4850 0.8367 -0.0738 27 1 -0.3314 -3.1395 1.4049 28 1 0.9666 -0.3654 2.0797 29 1 -0.5105 -1.1009 2.9037 30 1 0.8856 -3.0911 3.6300 31 1 2.3629 -2.3563 2.8059 32 1 3.5082 -3.0872 -1.1669 33 1 3.3014 -4.2175 0.1926 34 1 2.4458 -5.9418 -1.3690 35 1 4.0739 -5.4029 -1.8460 36 1 0.4368 -5.0989 -2.6203 37 1 0.6520 -3.9667 -3.9769 38 1 5.1039 -4.5809 -3.8966 39 1 4.6030 -3.5134 -5.2505 40 1 4.1307 -6.1893 -5.4006 41 1 2.8798 -5.0325 -5.9619 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891795574.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:37 Heat of formation + Delta-G solvation = -81.157429 kcal Electronic energy + Delta-G solvation = -25058.262244 eV Core-core repulsion = 21468.585339 eV Total energy + Delta-G solvation = -3589.676906 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -46.12320 -40.42775 -37.23337 -35.46926 -34.70170 -32.39292 -31.22125 -30.04834 -29.02473 -26.51805 -24.18892 -23.17105 -22.15730 -21.36655 -20.90313 -19.71644 -18.99465 -17.05257 -16.74756 -16.15252 -15.51790 -15.26368 -14.85646 -14.54678 -14.31171 -13.82194 -13.73841 -13.53382 -13.28101 -13.14158 -12.57166 -12.32158 -12.13887 -11.80482 -11.68723 -11.52631 -11.24720 -10.93731 -10.88142 -10.79417 -10.67187 -10.40212 -10.09847 -10.02472 -9.93830 -9.87512 -9.48243 -9.16186 -8.96517 -8.80550 -8.08480 -6.20124 -5.69602 -3.42179 3.42463 3.46139 3.49944 3.54474 4.16736 4.50514 4.65535 4.90008 4.94039 5.06449 5.13041 5.24779 5.30244 5.44652 5.47697 5.58005 5.65618 5.72195 5.78224 5.87044 5.96739 6.01410 6.10943 6.19395 6.23160 6.25971 6.33164 6.49327 6.61177 6.67864 6.75785 6.88895 7.00137 7.02915 7.27218 7.34113 7.37040 7.71962 7.98574 8.72179 9.31409 9.80060 10.48734 11.30243 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.022149 B = 0.006584 C = 0.005741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.855676 B = 4251.999160 C = 4876.218156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.044 3.956 3 Si 0.885 3.115 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.262 4.262 8 H 0.054 0.946 9 N -0.545 5.545 10 C 0.149 3.851 11 C -0.148 4.148 12 C -0.246 4.246 13 C 0.155 3.845 14 H 0.058 0.942 15 C -0.120 4.120 16 C -0.131 4.131 17 C 0.261 3.739 18 C -0.151 4.151 19 C 0.104 3.896 20 H 0.075 0.925 21 F -0.182 7.182 22 O -0.340 6.340 23 C 0.010 3.990 24 C 0.021 3.979 25 O -0.384 6.384 26 H 0.254 0.746 27 H 0.076 0.924 28 H 0.108 0.892 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.104 0.896 40 H 0.093 0.907 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.318 -10.482 -6.219 12.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.159 4.159 3 Si 0.714 3.286 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.392 4.392 8 H 0.072 0.928 9 N -0.262 5.262 10 C 0.041 3.959 11 C -0.187 4.187 12 C -0.287 4.287 13 C 0.048 3.952 14 H 0.077 0.923 15 C -0.159 4.159 16 C -0.169 4.169 17 C 0.184 3.816 18 C -0.190 4.190 19 C 0.066 3.934 20 H 0.093 0.907 21 F -0.163 7.163 22 O -0.259 6.259 23 C -0.067 4.067 24 C -0.055 4.055 25 O -0.306 6.306 26 H 0.064 0.936 27 H 0.093 0.907 28 H 0.126 0.874 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.107 0.893 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.122 0.878 40 H 0.111 0.889 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.038 -10.256 -6.109 12.602 hybrid contribution 0.530 0.982 -0.233 1.140 sum 4.568 -9.274 -6.342 12.129 Atomic orbital electron populations 1.70010 1.05414 1.25828 1.50245 1.25421 0.95011 0.98442 0.96997 0.86688 0.79582 0.83898 0.78477 1.20394 1.21622 1.20688 1.18588 0.91168 0.83261 1.46155 0.92821 1.43143 1.55670 1.10386 1.16991 1.20681 0.93476 0.99310 0.82419 1.22923 0.98957 0.94441 1.02338 1.23532 0.98921 1.04761 1.01440 1.20934 0.93925 0.91038 0.89348 0.92333 1.21816 0.99884 0.96705 0.97506 1.22107 1.00948 0.99801 0.94093 1.23326 0.92296 0.76869 0.89097 1.22611 0.94167 1.00337 1.01845 1.21740 0.95580 0.82941 0.93185 0.90732 1.92852 1.77903 1.56977 1.88561 1.89551 1.44326 1.28064 1.63995 1.24335 0.93032 0.95176 0.94161 1.24130 0.92641 0.97608 0.91170 1.88851 1.68818 1.37853 1.35067 0.93603 0.90673 0.87431 0.91916 0.91861 0.90205 0.90130 0.91995 0.90944 0.92010 0.89276 0.90832 0.91138 0.87811 0.88852 0.90985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.50 11.54 55.49 0.64 -23.86 16 2 C 0.04 1.19 3.18 -17.43 -0.06 1.13 16 3 Si 0.88 21.78 29.50 -169.99 -5.01 16.77 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.26 -6.98 6.28 -15.06 -0.09 -7.07 16 8 H 0.05 1.51 7.13 -52.49 -0.37 1.13 16 9 N -0.55 -13.11 2.56 -158.14 -0.41 -13.51 16 10 C 0.15 3.44 5.97 -67.93 -0.41 3.03 16 11 C -0.15 -3.46 8.35 -26.69 -0.22 -3.68 16 12 C -0.25 -5.17 10.38 -26.69 -0.28 -5.45 16 13 C 0.16 3.21 2.57 -67.93 -0.17 3.03 16 14 H 0.06 1.11 7.93 -51.93 -0.41 0.69 16 15 C -0.12 -2.26 4.90 -26.72 -0.13 -2.40 16 16 C -0.13 -2.07 5.29 -26.74 -0.14 -2.22 16 17 C 0.26 4.27 1.03 -26.77 -0.03 4.25 16 18 C -0.15 -2.56 5.21 -26.74 -0.14 -2.70 16 19 C 0.10 2.17 3.68 -26.73 -0.10 2.07 16 20 H 0.07 1.66 8.14 -51.93 -0.42 1.24 16 21 F -0.18 -4.49 12.98 2.25 0.03 -4.46 16 22 O -0.34 -5.99 8.55 -59.04 -0.51 -6.50 16 23 C 0.01 0.12 7.91 38.17 0.30 0.43 16 24 C 0.02 0.24 8.07 38.17 0.31 0.55 16 25 O -0.38 -5.74 10.87 -59.04 -0.64 -6.38 16 26 H 0.25 7.00 8.32 -40.82 -0.34 6.66 16 27 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 28 H 0.11 2.81 5.17 -51.93 -0.27 2.54 16 29 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.08 1.76 8.14 -51.93 -0.42 1.33 16 32 H 0.08 1.75 6.39 -51.93 -0.33 1.42 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.09 1.33 8.14 -51.92 -0.42 0.91 16 37 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 319.06 15.07 4.81 4.81 Total: -1.00 -29.95 319.06 -8.69 -38.64 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -6.44 Total: 3.53 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -1.16 Total: -9.02 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: 0.24 Total: -37.37 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: -1.15 Total: -12.88 kcal Atomic # 9 Polarization: -4.49 SS G_CDS: 0.03 Total: -4.46 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.01 Total: 16.77 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.95 -8.69 -38.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891795574.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.522 kcal (2) G-P(sol) polarization free energy of solvation -29.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds