Wall clock time and date at job start Tue Mar 31 2020 06:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86793 * 119.99740 * 2 1 4 4 H 1.48501 * 109.47288 * 239.99375 * 3 2 1 5 5 H 1.48499 * 109.47300 * 359.97438 * 3 2 1 6 6 H 1.48510 * 109.47171 * 119.99863 * 3 2 1 7 7 C 1.38809 * 120.00087 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00094 * 166.62143 * 7 2 1 9 9 N 1.36934 * 119.99995 * 346.90364 * 7 2 1 10 10 C 1.46503 * 119.99967 * 307.12002 * 9 7 2 11 11 C 1.53000 * 117.49778 * 2.07086 * 10 9 7 12 12 C 1.52999 * 117.49866 * 293.40934 * 10 9 7 13 13 C 1.46507 * 120.00084 * 127.12150 * 9 7 2 14 14 H 1.09003 * 109.46258 * 180.02562 * 13 9 7 15 15 C 1.52999 * 109.46139 * 60.05151 * 13 9 7 16 16 C 1.53015 * 109.46194 * 179.84314 * 15 13 9 17 17 C 1.52967 * 109.42941 * 59.78987 * 16 15 13 18 18 C 1.52952 * 109.82177 * 300.29730 * 17 16 15 19 19 C 1.52988 * 109.46160 * 299.99872 * 13 9 7 20 20 H 1.08999 * 109.47261 * 300.14740 * 19 13 9 21 21 F 1.39898 * 109.47170 * 60.14870 * 19 13 9 22 22 O 1.43708 * 109.39262 * 60.39904 * 17 16 15 23 23 C 1.44793 * 104.78769 * 95.46162 * 22 17 16 24 24 C 1.54915 * 101.72611 * 36.07767 * 23 22 17 25 25 O 1.43305 * 109.64796 * 179.70885 * 17 16 15 26 26 H 0.96997 * 120.00345 * 5.03781 * 1 2 3 27 27 H 1.09003 * 115.54561 * 147.74109 * 10 9 7 28 28 H 1.09004 * 117.49574 * 359.97438 * 11 10 9 29 29 H 1.08996 * 117.49808 * 145.01823 * 11 10 9 30 30 H 1.09001 * 117.49725 * 214.97792 * 12 10 9 31 31 H 1.09000 * 117.49989 * 359.97421 * 12 10 9 32 32 H 1.08993 * 109.46878 * 299.84031 * 15 13 9 33 33 H 1.09004 * 109.46885 * 59.84548 * 15 13 9 34 34 H 1.09003 * 109.47672 * 299.80716 * 16 15 13 35 35 H 1.09001 * 109.48553 * 179.78235 * 16 15 13 36 36 H 1.09007 * 109.47752 * 299.70298 * 18 17 16 37 37 H 1.08994 * 109.47982 * 179.68142 * 18 17 16 38 38 H 1.08995 * 110.97887 * 277.96576 * 23 22 17 39 39 H 1.09005 * 110.97888 * 154.18219 * 23 22 17 40 40 H 1.08999 * 110.69955 * 206.08514 * 24 23 22 41 41 H 1.08993 * 110.69595 * 82.88053 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0683 -1.2149 -0.2159 9 7 1.3523 -2.3725 0.2698 10 6 0.5444 -2.4956 1.4857 11 6 0.4363 -1.2659 2.3895 12 6 1.2787 -2.4666 2.8277 13 6 1.4564 -3.5015 -0.6581 14 1 0.8694 -4.3382 -0.2792 15 6 2.9216 -3.9231 -0.7857 16 6 3.0298 -5.1048 -1.7518 17 6 2.4914 -4.6921 -3.1228 18 6 1.0281 -4.2648 -2.9983 19 6 0.9229 -3.0846 -2.0300 20 1 -0.1203 -2.7822 -1.9377 21 9 1.6778 -2.0125 -2.5178 22 8 3.2682 -3.5944 -3.6298 23 6 4.2637 -4.2090 -4.4828 24 6 3.4634 -5.3784 -5.1088 25 8 2.5968 -5.7936 -4.0334 26 1 -0.4850 0.8367 -0.0738 27 1 -0.3314 -3.1395 1.4049 28 1 0.9666 -0.3654 2.0797 29 1 -0.5105 -1.1009 2.9037 30 1 0.8856 -3.0911 3.6300 31 1 2.3629 -2.3563 2.8059 32 1 3.5082 -3.0872 -1.1669 33 1 3.3014 -4.2175 0.1926 34 1 2.4458 -5.9418 -1.3690 35 1 4.0739 -5.4029 -1.8460 36 1 0.4368 -5.0989 -2.6203 37 1 0.6520 -3.9667 -3.9769 38 1 5.1039 -4.5809 -3.8966 39 1 4.6030 -3.5134 -5.2505 40 1 4.1307 -6.1893 -5.4006 41 1 2.8798 -5.0325 -5.9619 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891795574.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:37 Heat of formation + Delta-G solvation = -98.458823 kcal Electronic energy + Delta-G solvation = -25059.012489 eV Core-core repulsion = 21468.585339 eV Total energy + Delta-G solvation = -3590.427150 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.153 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -47.92354 -41.58384 -38.97514 -36.98065 -35.86959 -34.25755 -32.92971 -31.49031 -30.27951 -28.05813 -26.07393 -24.24497 -23.55395 -22.83407 -22.63575 -21.58152 -20.46456 -18.41357 -18.15389 -17.69948 -17.11746 -16.53676 -16.49359 -16.29553 -15.85361 -15.31280 -15.28614 -15.15136 -14.88948 -14.46901 -13.90581 -13.69701 -13.49105 -13.42058 -13.25838 -12.95771 -12.91564 -12.80803 -12.62596 -12.41650 -12.18210 -12.02791 -11.94814 -11.75208 -11.48678 -11.12925 -11.03859 -10.95233 -10.59859 -10.30767 -10.12152 -8.17893 -7.70624 -5.49044 1.41907 1.43687 1.48381 2.45486 2.52150 3.02415 3.30315 3.41038 3.59461 3.68598 3.72117 3.80687 4.09056 4.10182 4.22096 4.29679 4.38030 4.39325 4.46689 4.55625 4.56441 4.61909 4.71256 4.74660 4.77410 4.84525 4.85608 4.98830 5.07464 5.08367 5.17765 5.24463 5.31670 5.44125 5.53957 5.71053 5.80890 5.86085 6.24348 6.64292 7.34437 7.85653 8.48699 9.21026 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.022149 B = 0.006584 C = 0.005741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.855676 B = 4251.999160 C = 4876.218156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.009 3.991 3 Si 0.926 3.074 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.253 4.253 8 H 0.033 0.967 9 N -0.560 5.560 10 C 0.133 3.867 11 C -0.163 4.163 12 C -0.215 4.215 13 C 0.151 3.849 14 H 0.081 0.919 15 C -0.106 4.106 16 C -0.123 4.123 17 C 0.262 3.738 18 C -0.143 4.143 19 C 0.101 3.899 20 H 0.051 0.949 21 F -0.208 7.208 22 O -0.378 6.378 23 C 0.002 3.998 24 C 0.020 3.980 25 O -0.391 6.391 26 H 0.248 0.752 27 H 0.089 0.911 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.067 0.933 32 H 0.045 0.955 33 H 0.063 0.937 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.113 0.887 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.120 0.880 40 H 0.127 0.873 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.886 -12.759 -6.411 15.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.191 4.191 3 Si 0.755 3.245 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.384 4.384 8 H 0.051 0.949 9 N -0.277 5.277 10 C 0.025 3.975 11 C -0.201 4.201 12 C -0.256 4.256 13 C 0.044 3.956 14 H 0.099 0.901 15 C -0.145 4.145 16 C -0.161 4.161 17 C 0.185 3.815 18 C -0.182 4.182 19 C 0.063 3.937 20 H 0.069 0.931 21 F -0.189 7.189 22 O -0.299 6.299 23 C -0.074 4.074 24 C -0.056 4.056 25 O -0.312 6.312 26 H 0.058 0.942 27 H 0.106 0.894 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.116 0.884 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.111 0.889 35 H 0.095 0.905 36 H 0.132 0.868 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.138 0.862 40 H 0.145 0.855 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.625 -12.551 -6.305 14.787 hybrid contribution 0.398 1.652 -0.212 1.713 sum 5.023 -10.898 -6.517 13.655 Atomic orbital electron populations 1.70091 1.06087 1.25664 1.51911 1.25791 0.95516 1.00275 0.97485 0.86039 0.78642 0.81770 0.78080 1.21108 1.21577 1.20268 1.18444 0.90388 0.84572 1.45009 0.94933 1.43300 1.55612 1.10540 1.18269 1.20893 0.94330 0.99442 0.82795 1.22794 0.99734 0.93883 1.03690 1.23454 0.97903 1.03141 1.01057 1.21128 0.95434 0.90492 0.88553 0.90061 1.21597 0.97814 0.96812 0.98316 1.22033 1.02349 0.98704 0.93049 1.23206 0.91447 0.77109 0.89740 1.22514 0.95753 0.99229 1.00673 1.21796 0.93784 0.83530 0.94630 0.93112 1.92794 1.78448 1.58705 1.88955 1.89530 1.45737 1.29596 1.65037 1.24632 0.92614 0.95940 0.94238 1.24380 0.92615 0.98319 0.90246 1.88822 1.69678 1.37046 1.35702 0.94249 0.89352 0.90534 0.90947 0.88444 0.91398 0.93658 0.91811 0.88897 0.90545 0.86830 0.90932 0.90014 0.86225 0.85480 0.90300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.28 11.54 21.65 0.25 -51.03 16 2 C 0.01 0.52 3.18 84.86 0.27 0.79 16 3 Si 0.93 45.79 29.50 68.60 2.02 47.81 16 4 H -0.28 -14.26 7.11 99.48 0.71 -13.55 16 5 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 6 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 7 C -0.25 -13.80 6.28 84.03 0.53 -13.27 16 8 H 0.03 1.91 7.13 -2.91 -0.02 1.89 16 9 N -0.56 -26.97 2.56 -654.25 -1.68 -28.65 16 10 C 0.13 6.00 5.97 44.99 0.27 6.27 16 11 C -0.16 -7.52 8.35 30.62 0.26 -7.27 16 12 C -0.21 -8.65 10.38 30.62 0.32 -8.34 16 13 C 0.15 6.12 2.57 44.99 0.12 6.24 16 14 H 0.08 2.90 7.93 -2.39 -0.02 2.89 16 15 C -0.11 -3.92 4.90 30.60 0.15 -3.77 16 16 C -0.12 -3.60 5.29 30.59 0.16 -3.43 16 17 C 0.26 8.07 1.03 30.57 0.03 8.11 16 18 C -0.14 -4.67 5.21 30.59 0.16 -4.51 16 19 C 0.10 4.23 3.68 30.60 0.11 4.34 16 20 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 21 F -0.21 -10.54 12.98 44.97 0.58 -9.95 16 22 O -0.38 -13.04 8.55 -126.22 -1.08 -14.12 16 23 C 0.00 0.04 7.91 72.64 0.57 0.62 16 24 C 0.02 0.40 8.07 72.64 0.59 0.98 16 25 O -0.39 -10.46 10.87 -126.22 -1.37 -11.83 16 26 H 0.25 14.03 8.32 -92.71 -0.77 13.25 16 27 H 0.09 3.71 8.14 -2.39 -0.02 3.69 16 28 H 0.08 4.06 5.17 -2.38 -0.01 4.04 16 29 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 30 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 31 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 32 H 0.04 1.99 6.39 -2.39 -0.02 1.98 16 33 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.09 2.35 8.14 -2.39 -0.02 2.34 16 35 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.11 3.09 8.14 -2.38 -0.02 3.07 16 37 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.12 2.27 8.14 -2.38 -0.02 2.25 16 40 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -65.72 319.06 3.27 -62.45 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: 1.01 Total: 18.58 kcal Atomic # 6 Polarization: -16.78 SS G_CDS: 3.53 Total: -13.25 kcal Atomic # 7 Polarization: -78.25 SS G_CDS: -1.43 Total: -79.68 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -2.45 Total: -25.95 kcal Atomic # 9 Polarization: -10.54 SS G_CDS: 0.58 Total: -9.95 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.02 Total: 47.81 kcal Total: -65.72 3.27 -62.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891795574.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.007 kcal (2) G-P(sol) polarization free energy of solvation -65.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds