Wall clock time and date at job start Tue Mar 31 2020 06:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86804 * 120.00243 * 2 1 4 4 H 1.48502 * 109.47080 * 270.00002 * 3 2 1 5 5 H 1.48510 * 109.47050 * 29.99523 * 3 2 1 6 6 H 1.48495 * 109.47484 * 149.99534 * 3 2 1 7 7 C 1.38813 * 120.00152 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00203 * 165.53809 * 7 2 1 9 9 N 1.36943 * 119.99607 * 345.53304 * 7 2 1 10 10 C 1.46492 * 119.99978 * 307.94305 * 9 7 2 11 11 C 1.53005 * 117.50330 * 2.00317 * 10 9 7 12 12 C 1.52997 * 59.99936 * 252.50993 * 11 10 9 13 13 C 1.46499 * 119.99502 * 127.94640 * 9 7 2 14 14 H 1.09005 * 109.46444 * 179.97438 * 13 9 7 15 15 C 1.52991 * 109.46738 * 299.97267 * 13 9 7 16 16 C 1.53010 * 109.47190 * 180.17832 * 15 13 9 17 17 C 1.52953 * 109.45712 * 300.23116 * 16 15 13 18 18 C 1.52958 * 109.83140 * 59.62359 * 17 16 15 19 19 C 1.52997 * 109.46803 * 59.99758 * 13 9 7 20 20 H 1.08995 * 109.47395 * 299.81788 * 19 13 9 21 21 F 1.39897 * 109.47084 * 59.82252 * 19 13 9 22 22 O 1.43699 * 109.44663 * 179.76996 * 17 16 15 23 23 C 1.44807 * 104.79218 * 144.12046 * 22 17 16 24 24 C 1.54919 * 101.72580 * 323.92983 * 23 22 17 25 25 O 1.43319 * 109.64154 * 299.10254 * 17 16 15 26 26 H 0.97005 * 119.99409 * 356.62930 * 1 2 3 27 27 H 1.08999 * 115.54882 * 147.71265 * 10 9 7 28 28 H 1.08998 * 117.49233 * 0.02562 * 11 10 9 29 29 H 1.09003 * 117.50035 * 145.01693 * 11 10 9 30 30 H 1.09003 * 117.49809 * 252.50552 * 12 11 10 31 31 H 1.09002 * 117.51864 * 107.48293 * 12 11 10 32 32 H 1.09002 * 109.47537 * 300.17973 * 15 13 9 33 33 H 1.09000 * 109.47116 * 60.17571 * 15 13 9 34 34 H 1.09005 * 109.47694 * 180.23662 * 16 15 13 35 35 H 1.08999 * 109.47880 * 60.22267 * 16 15 13 36 36 H 1.09001 * 109.46969 * 60.36075 * 18 17 16 37 37 H 1.08992 * 109.47842 * 180.37293 * 18 17 16 38 38 H 1.08997 * 110.97442 * 205.81659 * 23 22 17 39 39 H 1.08999 * 110.97472 * 82.04301 * 23 22 17 40 40 H 1.09000 * 110.68897 * 153.93067 * 24 23 22 41 41 H 1.08999 * 110.69144 * 276.96201 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6528 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0646 -1.2171 -0.2330 9 7 1.3581 -2.3691 0.2973 10 6 0.5609 -2.4716 1.5221 11 6 0.4579 -1.2259 2.4044 12 6 1.3063 -2.4159 2.8570 13 6 1.4578 -3.5150 -0.6099 14 1 0.8773 -4.3465 -0.2101 15 6 0.9110 -3.1259 -1.9848 16 6 1.0110 -4.3240 -2.9313 17 6 2.4742 -4.7501 -3.0610 18 6 3.0267 -5.1338 -1.6872 19 6 2.9232 -3.9340 -0.7432 20 1 3.5034 -3.1037 -1.1457 21 9 3.4238 -4.2860 0.5149 22 8 2.5672 -5.8786 -3.9456 23 6 3.8074 -5.6819 -4.6668 24 6 3.8337 -4.1419 -4.8336 25 8 3.2439 -3.6705 -3.6050 26 1 -0.4849 0.8387 0.0494 27 1 -0.3139 -3.1190 1.4608 28 1 0.9830 -0.3299 2.0733 29 1 -0.4849 -1.0534 2.9237 30 1 0.9218 -3.0263 3.6741 31 1 2.3900 -2.3033 2.8241 32 1 -0.1322 -2.8246 -1.8891 33 1 1.4934 -2.2964 -2.3859 34 1 0.6253 -4.0455 -3.9120 35 1 0.4254 -5.1522 -2.5322 36 1 2.4495 -5.9653 -1.2828 37 1 4.0710 -5.4300 -1.7853 38 1 3.7780 -6.1790 -5.6364 39 1 4.6590 -6.0254 -4.0796 40 1 4.8581 -3.7826 -4.9319 41 1 3.2359 -3.8373 -5.6926 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891795575.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:39 Heat of formation + Delta-G solvation = -88.833380 kcal Electronic energy + Delta-G solvation = -24768.516547 eV Core-core repulsion = 21178.506787 eV Total energy + Delta-G solvation = -3590.009760 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.153 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -46.70712 -40.62798 -37.34433 -35.62177 -34.85785 -32.42966 -31.25930 -29.91507 -29.14407 -26.54615 -24.30775 -23.29892 -22.13122 -21.37272 -20.86942 -19.78527 -19.31092 -17.13347 -16.80445 -16.18175 -15.63296 -15.58160 -14.84974 -14.61929 -14.42614 -14.17101 -13.92731 -13.70830 -13.33829 -13.08671 -12.71884 -12.70525 -12.15191 -11.91876 -11.80510 -11.63060 -11.37617 -11.27042 -11.04824 -10.76620 -10.45521 -10.26989 -10.15262 -10.13154 -10.06925 -9.91156 -9.60821 -9.35542 -9.09197 -8.81806 -8.13976 -6.31934 -5.70838 -3.54938 3.33532 3.41708 3.43523 3.46101 4.02761 4.42850 4.54373 4.79315 4.87787 4.93943 5.01994 5.16384 5.25960 5.34183 5.41721 5.52252 5.55502 5.68025 5.73484 5.80243 5.83044 6.04248 6.08409 6.10321 6.21151 6.27963 6.37375 6.55056 6.59826 6.65354 6.83356 6.88284 7.02171 7.05539 7.23263 7.35760 7.38905 7.70056 7.85434 8.62915 9.23740 9.73330 10.44041 11.19542 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.019888 B = 0.006427 C = 0.005634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.537128 B = 4355.571415 C = 4968.705849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.041 3.959 3 Si 0.883 3.117 4 H -0.283 1.283 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.275 4.275 8 H 0.052 0.948 9 N -0.542 5.542 10 C 0.151 3.849 11 C -0.152 4.152 12 C -0.240 4.240 13 C 0.160 3.840 14 H 0.056 0.944 15 C -0.109 4.109 16 C -0.120 4.120 17 C 0.266 3.734 18 C -0.159 4.159 19 C 0.088 3.912 20 H 0.090 0.910 21 F -0.214 7.214 22 O -0.374 6.374 23 C 0.014 3.986 24 C 0.018 3.982 25 O -0.363 6.363 26 H 0.254 0.746 27 H 0.076 0.924 28 H 0.106 0.894 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.105 0.895 39 H 0.073 0.927 40 H 0.096 0.904 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.452 -9.622 -7.597 13.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.162 4.162 3 Si 0.711 3.289 4 H -0.209 1.209 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.405 4.405 8 H 0.070 0.930 9 N -0.259 5.259 10 C 0.043 3.957 11 C -0.190 4.190 12 C -0.281 4.281 13 C 0.052 3.948 14 H 0.074 0.926 15 C -0.148 4.148 16 C -0.158 4.158 17 C 0.189 3.811 18 C -0.198 4.198 19 C 0.050 3.950 20 H 0.107 0.893 21 F -0.195 7.195 22 O -0.294 6.294 23 C -0.063 4.063 24 C -0.058 4.058 25 O -0.283 6.283 26 H 0.064 0.936 27 H 0.093 0.907 28 H 0.124 0.876 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.088 0.912 38 H 0.123 0.877 39 H 0.091 0.909 40 H 0.114 0.886 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.160 -9.446 -7.543 12.784 hybrid contribution 0.648 0.879 0.009 1.092 sum 4.807 -8.567 -7.534 12.380 Atomic orbital electron populations 1.70118 1.05383 1.25819 1.49045 1.25433 0.94969 0.98583 0.97249 0.86671 0.80036 0.84182 0.78051 1.20922 1.21331 1.20025 1.18671 0.91212 0.84220 1.46437 0.93002 1.43051 1.56389 1.09333 1.17086 1.20646 0.93586 0.98979 0.82497 1.22948 0.99056 0.94462 1.02573 1.23481 0.99005 1.04603 1.01042 1.20850 0.91379 0.91211 0.91340 0.92598 1.21732 1.02846 0.96138 0.94100 1.21935 0.92169 1.00213 1.01490 1.23265 0.93237 0.76367 0.88204 1.22702 1.02194 0.99958 0.94939 1.21962 0.99158 0.95491 0.78427 0.89251 1.92742 1.89175 1.93461 1.44074 1.89250 1.39915 1.44894 1.55381 1.24352 0.87990 0.96045 0.97870 1.24157 0.99746 0.93224 0.88713 1.89023 1.66665 1.35877 1.36777 0.93587 0.90671 0.87596 0.91921 0.91867 0.90021 0.90772 0.90057 0.91312 0.90805 0.89664 0.91200 0.87709 0.90883 0.88558 0.90795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.68 11.57 55.49 0.64 -23.04 16 2 C 0.04 1.09 3.14 -17.43 -0.05 1.04 16 3 Si 0.88 21.05 29.44 -169.99 -5.00 16.04 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.28 -7.28 7.42 -15.06 -0.11 -7.39 16 8 H 0.05 1.43 7.12 -52.49 -0.37 1.06 16 9 N -0.54 -13.21 2.49 -158.15 -0.39 -13.60 16 10 C 0.15 3.58 5.98 -67.93 -0.41 3.18 16 11 C -0.15 -3.60 8.34 -26.73 -0.22 -3.82 16 12 C -0.24 -5.32 10.37 -26.73 -0.28 -5.59 16 13 C 0.16 3.37 2.40 -67.94 -0.16 3.20 16 14 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 15 C -0.11 -2.17 5.03 -26.73 -0.13 -2.30 16 16 C -0.12 -1.95 5.33 -26.75 -0.14 -2.09 16 17 C 0.27 4.18 1.02 -26.78 -0.03 4.15 16 18 C -0.16 -2.58 5.01 -26.74 -0.13 -2.72 16 19 C 0.09 1.74 3.00 -26.72 -0.08 1.66 16 20 H 0.09 1.93 6.76 -51.93 -0.35 1.58 16 21 F -0.21 -4.62 17.00 2.25 0.04 -4.58 16 22 O -0.37 -5.32 10.99 -59.04 -0.65 -5.97 16 23 C 0.01 0.15 7.91 38.17 0.30 0.45 16 24 C 0.02 0.21 8.07 38.17 0.31 0.52 16 25 O -0.36 -5.89 9.62 -59.04 -0.57 -6.46 16 26 H 0.25 6.79 8.32 -40.82 -0.34 6.45 16 27 H 0.08 1.71 8.14 -51.93 -0.42 1.28 16 28 H 0.11 2.77 5.08 -51.93 -0.26 2.50 16 29 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.08 1.92 8.14 -51.93 -0.42 1.50 16 32 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 33 H 0.08 1.83 7.24 -51.93 -0.38 1.45 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 323.74 15.07 4.88 4.88 Total: -1.00 -29.02 323.74 -8.61 -37.62 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -6.41 Total: 4.82 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: -1.14 Total: -9.72 kcal Atomic # 7 Polarization: -36.89 SS G_CDS: 0.25 Total: -36.64 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: -1.22 Total: -12.43 kcal Atomic # 9 Polarization: -4.62 SS G_CDS: 0.04 Total: -4.58 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.00 Total: 16.04 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.02 -8.61 -37.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891795575.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.212 kcal (2) G-P(sol) polarization free energy of solvation -29.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds