Wall clock time and date at job start Tue Mar 31 2020 06:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99715 * 2 1 4 4 H 1.48501 * 109.47196 * 270.00062 * 3 2 1 5 5 H 1.48501 * 109.46944 * 29.99956 * 3 2 1 6 6 H 1.48501 * 109.47129 * 149.99474 * 3 2 1 7 7 C 1.38807 * 120.00141 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00018 * 191.48279 * 7 2 1 9 9 N 1.36936 * 120.00420 * 11.48097 * 7 2 1 10 10 C 1.46496 * 119.99710 * 52.37711 * 9 7 2 11 11 C 1.53004 * 117.49811 * 357.78661 * 10 9 7 12 12 C 1.53007 * 117.49768 * 66.44690 * 10 9 7 13 13 C 1.46497 * 120.00327 * 232.38253 * 9 7 2 14 14 H 1.08996 * 109.46206 * 180.02562 * 13 9 7 15 15 C 1.52991 * 109.46417 * 60.04674 * 13 9 7 16 16 C 1.53019 * 109.46445 * 179.84373 * 15 13 9 17 17 C 1.52967 * 109.42983 * 59.79185 * 16 15 13 18 18 C 1.52954 * 109.82046 * 300.29776 * 17 16 15 19 19 C 1.52993 * 109.45890 * 299.99724 * 13 9 7 20 20 H 1.09002 * 109.47366 * 60.15367 * 19 13 9 21 21 F 1.39895 * 109.47157 * 300.14339 * 19 13 9 22 22 O 1.43710 * 109.39250 * 60.39603 * 17 16 15 23 23 C 1.44801 * 104.78654 * 95.46408 * 22 17 16 24 24 C 1.54912 * 101.72145 * 36.07661 * 23 22 17 25 25 O 1.43297 * 109.64875 * 179.70970 * 17 16 15 26 26 H 0.96993 * 120.00551 * 354.97601 * 1 2 3 27 27 H 1.09001 * 115.55560 * 212.11705 * 10 9 7 28 28 H 1.09001 * 117.49811 * 214.99467 * 11 10 9 29 29 H 1.08992 * 117.50216 * 0.02816 * 11 10 9 30 30 H 1.08995 * 117.49926 * 359.97438 * 12 10 9 31 31 H 1.09000 * 117.49865 * 144.97499 * 12 10 9 32 32 H 1.09003 * 109.47463 * 299.84328 * 15 13 9 33 33 H 1.08996 * 109.47201 * 59.85042 * 15 13 9 34 34 H 1.09003 * 109.48039 * 299.81162 * 16 15 13 35 35 H 1.08993 * 109.48956 * 179.78284 * 16 15 13 36 36 H 1.08992 * 109.47778 * 299.70271 * 18 17 16 37 37 H 1.08995 * 109.48242 * 179.67919 * 18 17 16 38 38 H 1.08996 * 110.97673 * 277.96998 * 23 22 17 39 39 H 1.08995 * 111.01254 * 154.19964 * 23 22 17 40 40 H 1.09000 * 110.69194 * 206.08443 * 24 23 22 41 41 H 1.09000 * 110.69832 * 82.88576 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7002 7 6 2.0103 -1.2021 0.0005 8 1 3.0740 -1.2113 0.1867 9 7 1.3462 -2.3763 -0.2350 10 6 0.5002 -2.5137 -1.4230 11 6 0.3584 -1.2929 -2.3343 12 6 1.1909 -2.4947 -2.7882 13 6 1.4818 -3.4950 0.7011 14 1 0.8854 -4.3369 0.3497 15 6 0.9903 -3.0645 2.0845 16 6 1.1283 -4.2342 3.0614 17 6 2.5960 -4.6570 3.1450 18 6 3.0925 -5.0831 1.7625 19 6 2.9512 -3.9121 0.7875 20 1 3.5475 -3.0710 1.1412 21 9 3.4002 -4.3027 -0.4785 22 8 3.3847 -3.5519 3.6162 23 6 3.5014 -3.7634 5.0440 24 6 3.6015 -5.3071 5.1263 25 8 2.7315 -5.7480 4.0641 26 1 -0.4850 0.8367 0.0736 27 1 -0.3700 -3.1599 -1.3084 28 1 -0.6052 -1.1361 -2.8192 29 1 0.8948 -0.3877 -2.0502 30 1 2.2747 -2.3794 -2.8023 31 1 0.7753 -3.1286 -3.5714 32 1 1.5882 -2.2241 2.4373 33 1 -0.0558 -2.7652 2.0216 34 1 0.5278 -5.0735 2.7106 35 1 0.7819 -3.9267 4.0480 36 1 2.4993 -5.9256 1.4071 37 1 4.1399 -5.3777 1.8273 38 1 2.6155 -3.4015 5.5657 39 1 4.4026 -3.2925 5.4364 40 1 3.2432 -5.6654 6.0914 41 1 4.6250 -5.6369 4.9478 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891795576.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:45 Heat of formation + Delta-G solvation = -88.029607 kcal Electronic energy + Delta-G solvation = -24775.570008 eV Core-core repulsion = 21185.595103 eV Total energy + Delta-G solvation = -3589.974905 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.153 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -46.70297 -40.63260 -37.33038 -35.61433 -34.83094 -32.42350 -31.28687 -29.96549 -29.06307 -26.57402 -24.33003 -23.23475 -22.14209 -21.36637 -20.83743 -19.78389 -19.31878 -17.11844 -16.83219 -16.19763 -15.61839 -15.47624 -14.96198 -14.62559 -14.44352 -14.14036 -13.93814 -13.68906 -13.32738 -13.10760 -12.69874 -12.55233 -12.18582 -11.86374 -11.84375 -11.68876 -11.39229 -11.29495 -11.00973 -10.81650 -10.47397 -10.23559 -10.15101 -10.09751 -10.06834 -9.92305 -9.60051 -9.34272 -9.06553 -8.79799 -8.15930 -6.25069 -5.76149 -3.54513 3.33048 3.40656 3.42673 3.44272 4.02323 4.40983 4.55263 4.83128 4.88014 4.96648 5.05855 5.15983 5.27085 5.35517 5.41610 5.49362 5.57723 5.68068 5.72921 5.78455 5.86457 6.00920 6.08607 6.11125 6.22976 6.30188 6.36746 6.56007 6.60130 6.67998 6.85251 6.87316 7.00494 7.08257 7.22128 7.34505 7.40118 7.75537 7.85915 8.63500 9.23789 9.72709 10.43638 11.19792 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.019477 B = 0.006529 C = 0.005635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.254423 B = 4287.486978 C = 4967.653488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.041 3.959 3 Si 0.886 3.114 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.275 1.275 7 C -0.275 4.275 8 H 0.053 0.947 9 N -0.543 5.543 10 C 0.151 3.849 11 C -0.147 4.147 12 C -0.243 4.243 13 C 0.161 3.839 14 H 0.056 0.944 15 C -0.109 4.109 16 C -0.136 4.136 17 C 0.265 3.735 18 C -0.143 4.143 19 C 0.087 3.913 20 H 0.090 0.910 21 F -0.213 7.213 22 O -0.357 6.357 23 C 0.014 3.986 24 C 0.020 3.980 25 O -0.381 6.381 26 H 0.255 0.745 27 H 0.075 0.925 28 H 0.061 0.939 29 H 0.107 0.893 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.106 0.894 40 H 0.096 0.904 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.748 -8.686 8.665 12.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.162 4.162 3 Si 0.715 3.285 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.200 1.200 7 C -0.405 4.405 8 H 0.070 0.930 9 N -0.259 5.259 10 C 0.043 3.957 11 C -0.185 4.185 12 C -0.284 4.284 13 C 0.053 3.947 14 H 0.074 0.926 15 C -0.148 4.148 16 C -0.174 4.174 17 C 0.189 3.811 18 C -0.181 4.181 19 C 0.049 3.951 20 H 0.108 0.892 21 F -0.194 7.194 22 O -0.277 6.277 23 C -0.063 4.063 24 C -0.056 4.056 25 O -0.302 6.302 26 H 0.065 0.935 27 H 0.093 0.907 28 H 0.080 0.920 29 H 0.126 0.874 30 H 0.099 0.901 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.104 0.896 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.124 0.876 40 H 0.114 0.886 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.584 -8.558 8.429 12.536 hybrid contribution 0.476 0.980 0.155 1.100 sum 4.060 -7.578 8.584 12.149 Atomic orbital electron populations 1.70048 1.05359 1.25866 1.49550 1.25499 0.95125 0.98483 0.97109 0.86587 0.79861 0.83999 0.78077 1.20916 1.21508 1.20006 1.18709 0.90649 0.83443 1.47695 0.92967 1.43056 1.53629 1.10279 1.18975 1.20641 0.93308 0.99223 0.82525 1.22932 0.98763 0.94468 1.02366 1.23509 0.99155 1.04371 1.01381 1.20837 0.91457 0.91492 0.90945 0.92570 1.21730 1.02821 0.96440 0.93833 1.22211 0.93558 1.00467 1.01197 1.23254 0.92161 0.76647 0.89064 1.22413 1.02664 0.99812 0.93253 1.21981 0.99765 0.95397 0.77958 0.89227 1.92744 1.90858 1.92493 1.43264 1.89371 1.72975 1.45539 1.19849 1.24343 1.03273 0.95109 0.83592 1.24156 0.95434 0.94260 0.91794 1.88875 1.68017 1.37562 1.35767 0.93469 0.90745 0.92011 0.87449 0.90101 0.91927 0.90142 0.90920 0.90833 0.91760 0.89553 0.90750 0.90726 0.87636 0.88614 0.90898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.69 11.31 55.49 0.63 -23.06 16 2 C 0.04 1.08 3.22 -17.43 -0.06 1.03 16 3 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.27 -7.25 7.42 -15.06 -0.11 -7.36 16 8 H 0.05 1.44 7.11 -52.49 -0.37 1.07 16 9 N -0.54 -13.23 2.49 -158.16 -0.39 -13.62 16 10 C 0.15 3.60 5.96 -67.93 -0.40 3.20 16 11 C -0.15 -3.51 8.26 -26.69 -0.22 -3.73 16 12 C -0.24 -5.43 10.38 -26.69 -0.28 -5.70 16 13 C 0.16 3.37 2.40 -67.94 -0.16 3.21 16 14 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 15 C -0.11 -2.14 5.03 -26.73 -0.13 -2.28 16 16 C -0.14 -2.17 5.29 -26.74 -0.14 -2.31 16 17 C 0.27 4.16 1.03 -26.77 -0.03 4.14 16 18 C -0.14 -2.35 5.08 -26.74 -0.14 -2.49 16 19 C 0.09 1.74 3.00 -26.72 -0.08 1.66 16 20 H 0.09 1.95 6.74 -51.93 -0.35 1.60 16 21 F -0.21 -4.62 17.00 2.25 0.04 -4.58 16 22 O -0.36 -5.76 9.66 -59.04 -0.57 -6.33 16 23 C 0.01 0.15 7.91 38.17 0.30 0.46 16 24 C 0.02 0.21 8.07 38.17 0.31 0.52 16 25 O -0.38 -5.46 10.87 -59.04 -0.64 -6.10 16 26 H 0.26 6.80 8.32 -40.82 -0.34 6.46 16 27 H 0.07 1.70 8.14 -51.93 -0.42 1.28 16 28 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 29 H 0.11 2.84 5.14 -51.93 -0.27 2.58 16 30 H 0.08 1.92 8.14 -51.93 -0.42 1.49 16 31 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.08 1.78 7.21 -51.93 -0.37 1.40 16 33 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 323.52 15.07 4.88 4.88 Total: -1.00 -28.89 323.52 -8.64 -37.53 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -6.41 Total: 4.97 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -1.14 Total: -9.67 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: 0.23 Total: -36.68 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: -1.21 Total: -12.43 kcal Atomic # 9 Polarization: -4.62 SS G_CDS: 0.04 Total: -4.58 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.89 -8.64 -37.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891795576.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.501 kcal (2) G-P(sol) polarization free energy of solvation -28.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds