Wall clock time and date at job start Tue Mar 31 2020 06:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99715 * 2 1 4 4 H 1.48501 * 109.47196 * 270.00062 * 3 2 1 5 5 H 1.48501 * 109.46944 * 29.99956 * 3 2 1 6 6 H 1.48501 * 109.47129 * 149.99474 * 3 2 1 7 7 C 1.38807 * 120.00141 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00018 * 191.48279 * 7 2 1 9 9 N 1.36936 * 120.00420 * 11.48097 * 7 2 1 10 10 C 1.46496 * 119.99710 * 52.37711 * 9 7 2 11 11 C 1.53004 * 117.49811 * 357.78661 * 10 9 7 12 12 C 1.53007 * 117.49768 * 66.44690 * 10 9 7 13 13 C 1.46497 * 120.00327 * 232.38253 * 9 7 2 14 14 H 1.08996 * 109.46206 * 180.02562 * 13 9 7 15 15 C 1.52991 * 109.46417 * 60.04674 * 13 9 7 16 16 C 1.53019 * 109.46445 * 179.84373 * 15 13 9 17 17 C 1.52967 * 109.42983 * 59.79185 * 16 15 13 18 18 C 1.52954 * 109.82046 * 300.29776 * 17 16 15 19 19 C 1.52993 * 109.45890 * 299.99724 * 13 9 7 20 20 H 1.09002 * 109.47366 * 60.15367 * 19 13 9 21 21 F 1.39895 * 109.47157 * 300.14339 * 19 13 9 22 22 O 1.43710 * 109.39250 * 60.39603 * 17 16 15 23 23 C 1.44801 * 104.78654 * 95.46408 * 22 17 16 24 24 C 1.54912 * 101.72145 * 36.07661 * 23 22 17 25 25 O 1.43297 * 109.64875 * 179.70970 * 17 16 15 26 26 H 0.96993 * 120.00551 * 354.97601 * 1 2 3 27 27 H 1.09001 * 115.55560 * 212.11705 * 10 9 7 28 28 H 1.09001 * 117.49811 * 214.99467 * 11 10 9 29 29 H 1.08992 * 117.50216 * 0.02816 * 11 10 9 30 30 H 1.08995 * 117.49926 * 359.97438 * 12 10 9 31 31 H 1.09000 * 117.49865 * 144.97499 * 12 10 9 32 32 H 1.09003 * 109.47463 * 299.84328 * 15 13 9 33 33 H 1.08996 * 109.47201 * 59.85042 * 15 13 9 34 34 H 1.09003 * 109.48039 * 299.81162 * 16 15 13 35 35 H 1.08993 * 109.48956 * 179.78284 * 16 15 13 36 36 H 1.08992 * 109.47778 * 299.70271 * 18 17 16 37 37 H 1.08995 * 109.48242 * 179.67919 * 18 17 16 38 38 H 1.08996 * 110.97673 * 277.96998 * 23 22 17 39 39 H 1.08995 * 111.01254 * 154.19964 * 23 22 17 40 40 H 1.09000 * 110.69194 * 206.08443 * 24 23 22 41 41 H 1.09000 * 110.69832 * 82.88576 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7002 7 6 2.0103 -1.2021 0.0005 8 1 3.0740 -1.2113 0.1867 9 7 1.3462 -2.3763 -0.2350 10 6 0.5002 -2.5137 -1.4230 11 6 0.3584 -1.2929 -2.3343 12 6 1.1909 -2.4947 -2.7882 13 6 1.4818 -3.4950 0.7011 14 1 0.8854 -4.3369 0.3497 15 6 0.9903 -3.0645 2.0845 16 6 1.1283 -4.2342 3.0614 17 6 2.5960 -4.6570 3.1450 18 6 3.0925 -5.0831 1.7625 19 6 2.9512 -3.9121 0.7875 20 1 3.5475 -3.0710 1.1412 21 9 3.4002 -4.3027 -0.4785 22 8 3.3847 -3.5519 3.6162 23 6 3.5014 -3.7634 5.0440 24 6 3.6015 -5.3071 5.1263 25 8 2.7315 -5.7480 4.0641 26 1 -0.4850 0.8367 0.0736 27 1 -0.3700 -3.1599 -1.3084 28 1 -0.6052 -1.1361 -2.8192 29 1 0.8948 -0.3877 -2.0502 30 1 2.2747 -2.3794 -2.8023 31 1 0.7753 -3.1286 -3.5714 32 1 1.5882 -2.2241 2.4373 33 1 -0.0558 -2.7652 2.0216 34 1 0.5278 -5.0735 2.7106 35 1 0.7819 -3.9267 4.0480 36 1 2.4993 -5.9256 1.4071 37 1 4.1399 -5.3777 1.8273 38 1 2.6155 -3.4015 5.5657 39 1 4.4026 -3.2925 5.4364 40 1 3.2432 -5.6654 6.0914 41 1 4.6250 -5.6369 4.9478 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891795576.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:42 Heat of formation + Delta-G solvation = -104.025616 kcal Electronic energy + Delta-G solvation = -24776.263647 eV Core-core repulsion = 21185.595103 eV Total energy + Delta-G solvation = -3590.668544 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.153 amu Computer time = 2.30 seconds Orbital eigenvalues (eV) -48.39281 -41.75451 -39.07604 -37.16557 -35.94329 -34.29904 -32.98746 -31.41508 -30.25619 -28.10821 -26.21484 -24.22416 -23.56851 -22.86049 -22.64751 -21.68689 -20.78708 -18.40670 -18.19902 -17.72097 -17.36697 -16.68397 -16.50967 -16.28742 -16.03441 -15.69053 -15.37412 -15.17899 -14.91272 -14.47987 -14.05750 -13.81182 -13.61635 -13.41104 -13.35905 -13.29966 -13.07361 -12.92926 -12.71331 -12.32494 -12.10212 -11.99537 -11.96026 -11.74568 -11.59670 -11.34306 -11.07189 -10.93738 -10.66532 -10.51180 -10.17259 -8.23004 -7.74649 -5.59372 1.40578 1.44802 1.50994 2.39278 2.46613 2.91369 3.24060 3.36324 3.55573 3.58819 3.66693 3.78806 3.90185 4.08387 4.15809 4.21433 4.27478 4.33706 4.44264 4.50938 4.56510 4.58193 4.70223 4.74557 4.76778 4.80262 4.81735 4.97279 5.03991 5.06458 5.07720 5.22989 5.29006 5.37965 5.52618 5.67419 5.73517 5.82342 6.16056 6.57992 7.25983 7.79218 8.44868 9.14907 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.019477 B = 0.006529 C = 0.005635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.254423 B = 4287.486978 C = 4967.653488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.010 3.990 3 Si 0.934 3.066 4 H -0.284 1.284 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.277 4.277 8 H 0.033 0.967 9 N -0.557 5.557 10 C 0.134 3.866 11 C -0.153 4.153 12 C -0.222 4.222 13 C 0.156 3.844 14 H 0.066 0.934 15 C -0.092 4.092 16 C -0.128 4.128 17 C 0.270 3.730 18 C -0.135 4.135 19 C 0.094 3.906 20 H 0.064 0.936 21 F -0.225 7.225 22 O -0.388 6.388 23 C 0.005 3.995 24 C 0.018 3.982 25 O -0.389 6.389 26 H 0.253 0.747 27 H 0.085 0.915 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.128 0.872 40 H 0.127 0.873 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.966 -10.094 9.734 14.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.191 4.191 3 Si 0.762 3.238 4 H -0.211 1.211 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.408 4.408 8 H 0.051 0.949 9 N -0.274 5.274 10 C 0.026 3.974 11 C -0.192 4.192 12 C -0.262 4.262 13 C 0.049 3.951 14 H 0.084 0.916 15 C -0.132 4.132 16 C -0.166 4.166 17 C 0.193 3.807 18 C -0.174 4.174 19 C 0.055 3.945 20 H 0.082 0.918 21 F -0.206 7.206 22 O -0.309 6.309 23 C -0.071 4.071 24 C -0.058 4.058 25 O -0.310 6.310 26 H 0.062 0.938 27 H 0.103 0.897 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.112 0.888 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.106 0.894 35 H 0.096 0.904 36 H 0.118 0.882 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.146 0.854 40 H 0.145 0.855 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.816 -9.982 9.516 14.310 hybrid contribution 0.455 1.399 -0.145 1.478 sum 4.271 -8.584 9.371 13.407 Atomic orbital electron populations 1.70129 1.06128 1.26066 1.50515 1.25892 0.95676 1.00453 0.97074 0.85843 0.78908 0.81338 0.77735 1.21080 1.21215 1.20002 1.18618 0.89986 0.84689 1.47482 0.94914 1.43210 1.53597 1.10583 1.20010 1.20858 0.94020 0.99463 0.83012 1.22792 0.99353 0.93723 1.03292 1.23427 0.97923 1.03535 1.01349 1.21014 0.92421 0.90713 0.90984 0.91566 1.21448 1.00596 0.97032 0.94106 1.22110 0.94613 0.99206 1.00705 1.23015 0.91485 0.77142 0.89017 1.22333 1.03652 0.98418 0.92999 1.21855 0.98239 0.96281 0.78077 0.91786 1.92717 1.90941 1.92565 1.44328 1.89358 1.73040 1.45928 1.22614 1.24661 1.04779 0.96218 0.81400 1.24443 0.95791 0.93448 0.92073 1.88850 1.68893 1.36923 1.36378 0.93791 0.89699 0.90808 0.90228 0.91886 0.88831 0.93146 0.92960 0.89380 0.90413 0.88221 0.89895 0.90042 0.85444 0.85497 0.89709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.15 11.31 21.65 0.24 -48.91 16 2 C 0.01 0.55 3.22 84.86 0.27 0.83 16 3 Si 0.93 43.94 29.54 68.60 2.03 45.97 16 4 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 5 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 6 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 7 C -0.28 -15.00 7.42 84.03 0.62 -14.37 16 8 H 0.03 1.89 7.11 -2.91 -0.02 1.87 16 9 N -0.56 -27.52 2.49 -654.29 -1.63 -29.15 16 10 C 0.13 6.38 5.96 45.00 0.27 6.65 16 11 C -0.15 -7.31 8.26 30.62 0.25 -7.05 16 12 C -0.22 -9.70 10.38 30.62 0.32 -9.38 16 13 C 0.16 6.56 2.40 44.99 0.11 6.67 16 14 H 0.07 2.63 7.93 -2.39 -0.02 2.61 16 15 C -0.09 -3.66 5.03 30.60 0.15 -3.51 16 16 C -0.13 -3.90 5.29 30.59 0.16 -3.74 16 17 C 0.27 8.02 1.03 30.57 0.03 8.05 16 18 C -0.14 -4.28 5.08 30.59 0.16 -4.12 16 19 C 0.09 3.74 3.00 30.60 0.09 3.83 16 20 H 0.06 2.88 6.74 -2.39 -0.02 2.86 16 21 F -0.22 -9.75 17.00 44.97 0.76 -8.98 16 22 O -0.39 -12.14 9.66 -126.22 -1.22 -13.36 16 23 C 0.01 0.10 7.91 72.64 0.57 0.68 16 24 C 0.02 0.32 8.07 72.64 0.59 0.91 16 25 O -0.39 -10.00 10.87 -126.22 -1.37 -11.37 16 26 H 0.25 13.64 8.32 -92.71 -0.77 12.86 16 27 H 0.09 3.81 8.14 -2.39 -0.02 3.79 16 28 H 0.07 3.28 8.14 -2.39 -0.02 3.26 16 29 H 0.08 4.27 5.14 -2.39 -0.01 4.26 16 30 H 0.06 2.98 8.14 -2.39 -0.02 2.96 16 31 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 32 H 0.05 2.29 7.21 -2.39 -0.02 2.27 16 33 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 37 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 38 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.13 1.97 8.14 -2.39 -0.02 1.96 16 40 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.08 1.32 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -62.55 323.52 3.42 -59.13 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: 1.01 Total: 21.24 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: 3.60 Total: -14.57 kcal Atomic # 7 Polarization: -76.67 SS G_CDS: -1.39 Total: -78.06 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -2.59 Total: -24.73 kcal Atomic # 9 Polarization: -9.75 SS G_CDS: 0.76 Total: -8.98 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -62.55 3.42 -59.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891795576.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.896 kcal (2) G-P(sol) polarization free energy of solvation -62.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.30 seconds