Wall clock time and date at job start Tue Mar 31 2020 05:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47096 * 2 1 4 4 C 1.53003 * 109.47057 * 240.00148 * 2 1 3 5 5 C 1.50695 * 109.47110 * 59.99655 * 4 2 1 6 6 H 1.07996 * 120.00230 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00074 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99695 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00142 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.46784 * 0.02562 * 9 7 5 11 11 H 1.48492 * 109.46909 * 120.00623 * 9 7 5 12 12 H 1.48506 * 109.46987 * 240.00476 * 9 7 5 13 13 C 1.53001 * 109.47135 * 120.00069 * 2 1 3 14 14 N 1.46499 * 109.47199 * 299.99920 * 13 2 1 15 15 C 1.38538 * 120.00132 * 180.02562 * 14 13 2 16 16 C 1.39672 * 120.52805 * 359.97438 * 15 14 13 17 17 C 1.38077 * 118.32665 * 179.97438 * 16 15 14 18 18 C 1.50706 * 120.39419 * 180.02562 * 17 16 15 19 19 F 1.39900 * 109.46715 * 209.99654 * 18 17 16 20 20 F 1.39897 * 109.47068 * 329.99565 * 18 17 16 21 21 N 1.32577 * 119.20531 * 0.27251 * 17 16 15 22 22 C 1.31759 * 121.00879 * 359.44705 * 21 17 16 23 23 N 1.31780 * 121.83574 * 0.56539 * 22 21 17 24 24 H 1.09002 * 109.46722 * 300.00220 * 1 2 3 25 25 H 1.08998 * 109.47039 * 59.99818 * 1 2 3 26 26 H 1.08995 * 109.47086 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47029 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47325 * 300.00007 * 3 2 1 29 29 H 1.09002 * 109.47515 * 60.00266 * 3 2 1 30 30 H 1.08996 * 109.47458 * 180.02562 * 4 2 1 31 31 H 1.09002 * 109.46906 * 300.00075 * 4 2 1 32 32 H 0.97005 * 120.00002 * 179.97438 * 8 7 5 33 33 H 1.08996 * 109.47092 * 179.97438 * 13 2 1 34 34 H 1.09002 * 109.47098 * 59.99759 * 13 2 1 35 35 H 0.97000 * 119.99825 * 0.02562 * 14 13 2 36 36 H 1.07991 * 120.83407 * 359.96081 * 16 15 14 37 37 H 1.09000 * 109.47161 * 89.99810 * 18 17 16 38 38 H 1.08008 * 119.08362 * 180.26657 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0109 -2.4797 6 1 0.9171 0.8674 -2.3806 7 6 1.8711 -0.4816 -3.7320 8 7 2.6273 -1.5508 -3.8526 9 14 1.2490 0.3994 -5.2572 10 1 0.4244 1.5664 -4.8529 11 1 2.4042 0.8661 -6.0650 12 1 0.4241 -0.5338 -6.0660 13 6 2.0401 -0.7213 1.2492 14 7 1.5518 -0.0307 2.4454 15 6 1.8869 -0.5037 3.7037 16 6 2.6891 -1.6383 3.8447 17 6 2.9955 -2.0697 5.1200 18 6 3.8580 -3.2883 5.3261 19 9 3.4969 -3.9182 6.5219 20 9 3.6760 -4.1743 4.2589 21 7 2.5179 -1.4020 6.1610 22 6 1.7677 -0.3317 5.9947 23 7 1.4504 0.1155 4.7964 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 3.1300 -0.7217 -1.2491 31 1 1.6767 -1.7489 -1.2493 32 1 2.8616 -1.8822 -4.7337 33 1 3.1300 -0.7217 1.2490 34 1 1.6767 -1.7489 1.2492 35 1 0.9938 0.7578 2.3564 36 1 3.0603 -2.1649 2.9780 37 1 4.9048 -2.9885 5.3750 38 1 1.3986 0.1911 6.8648 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893865472.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:43 Heat of formation + Delta-G solvation = -66.721871 kcal Electronic energy + Delta-G solvation = -22219.016404 eV Core-core repulsion = 18538.797918 eV Total energy + Delta-G solvation = -3680.218487 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.135 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.18071 -47.18747 -41.03029 -38.10951 -35.24839 -33.57941 -32.44673 -30.79071 -27.51167 -27.05273 -26.62761 -26.51534 -24.05390 -22.96145 -22.04800 -18.94906 -18.21686 -17.78670 -17.73257 -16.90812 -16.40143 -15.69134 -15.47787 -15.20153 -14.93586 -14.59630 -14.23976 -14.19082 -13.97720 -13.50731 -13.19248 -13.06045 -12.89864 -12.69966 -12.15831 -11.76262 -11.52161 -11.11988 -11.02118 -10.95319 -10.89133 -10.74180 -10.52344 -10.33912 -10.13601 -9.92519 -9.40465 -9.34051 -9.04365 -8.44980 -8.16750 -6.09125 -4.10542 0.74273 1.19557 2.95759 3.16512 3.24793 3.33494 3.35751 3.68111 3.83782 4.00911 4.38062 4.51048 4.59245 4.76182 4.89931 5.22195 5.26421 5.30639 5.38273 5.41762 5.60695 5.87676 5.99657 6.04858 6.11097 6.22550 6.47994 6.51891 6.62053 6.91098 6.94813 6.96826 7.15274 7.50240 7.52579 7.61747 7.88870 8.10699 8.30268 8.94013 9.53451 11.02312 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.026039 B = 0.003480 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.063001 B = 8044.763941 C = 8897.432666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.070 4.070 3 C -0.129 4.129 4 C 0.036 3.964 5 C -0.513 4.513 6 H 0.060 0.940 7 C 0.057 3.943 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.284 1.284 13 C 0.125 3.875 14 N -0.692 5.692 15 C 0.445 3.555 16 C -0.259 4.259 17 C 0.124 3.876 18 C 0.329 3.671 19 F -0.186 7.186 20 F -0.190 7.190 21 N -0.549 5.549 22 C 0.342 3.658 23 N -0.576 5.576 24 H 0.030 0.970 25 H 0.069 0.931 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.069 0.931 29 H 0.030 0.970 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.260 0.740 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.410 0.590 36 H 0.152 0.848 37 H 0.132 0.868 38 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.344 0.606 16.899 16.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.071 4.071 3 C -0.186 4.186 4 C -0.001 4.001 5 C -0.551 4.551 6 H 0.078 0.922 7 C -0.144 4.144 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.002 3.998 14 N -0.322 5.322 15 C 0.198 3.802 16 C -0.289 4.289 17 C -0.019 4.019 18 C 0.274 3.726 19 F -0.167 7.167 20 F -0.171 7.171 21 N -0.268 5.268 22 C 0.052 3.948 23 N -0.301 5.301 24 H 0.049 0.951 25 H 0.088 0.912 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.088 0.912 29 H 0.049 0.951 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.248 0.752 36 H 0.170 0.830 37 H 0.150 0.850 38 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 1.152 0.805 17.324 17.381 hybrid contribution -0.277 0.186 -1.722 1.754 sum 0.875 0.991 15.602 15.657 Atomic orbital electron populations 1.21778 0.94993 1.01300 1.00554 1.20901 0.95737 0.95986 0.94428 1.21775 1.00522 0.95731 1.00561 1.19104 0.96348 0.95242 0.89403 1.21191 1.31318 1.12170 0.90426 0.92153 1.25001 0.95215 0.95046 0.99132 1.69961 1.36886 1.23007 1.23470 0.86586 0.78654 0.79713 0.83353 1.19771 1.21076 1.21062 1.21917 0.98824 0.96238 0.82825 1.45009 1.53714 1.32073 1.01386 1.18570 0.87105 0.87724 0.86787 1.21898 1.06700 1.00976 0.99285 1.21650 0.94838 0.95508 0.89939 1.20042 0.99005 0.81607 0.71963 1.93033 1.93810 1.83569 1.46268 1.93049 1.96951 1.70481 1.56624 1.68037 1.15063 1.10177 1.33573 1.24628 0.88416 0.88240 0.93479 1.68009 1.28593 1.34780 0.98722 0.95086 0.91193 0.93275 0.93302 0.91198 0.95086 0.96277 0.96254 0.93014 0.91512 0.91469 0.75174 0.83018 0.85048 0.78455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 8.05 37.16 0.30 -1.86 16 2 C -0.07 -1.22 0.54 -154.51 -0.08 -1.30 16 3 C -0.13 -2.13 8.05 37.15 0.30 -1.83 16 4 C 0.04 0.83 4.04 -27.88 -0.11 0.72 16 5 C -0.51 -13.04 7.65 -34.44 -0.26 -13.31 16 6 H 0.06 1.49 5.68 -52.49 -0.30 1.19 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.89 -25.43 13.29 55.43 0.74 -24.70 16 9 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 10 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 C 0.13 1.86 3.82 -4.04 -0.02 1.84 16 14 N -0.69 -9.38 5.11 -60.26 -0.31 -9.69 16 15 C 0.44 6.12 7.71 -154.79 -1.19 4.93 16 16 C -0.26 -3.35 8.74 -39.11 -0.34 -3.69 16 17 C 0.12 1.53 6.60 -82.33 -0.54 0.99 16 18 C 0.33 3.39 5.74 36.01 0.21 3.59 16 19 F -0.19 -2.23 17.09 2.25 0.04 -2.19 16 20 F -0.19 -2.21 16.55 2.25 0.04 -2.17 16 21 N -0.55 -7.00 10.09 -10.88 -0.11 -7.11 16 22 C 0.34 4.02 12.28 -92.20 -1.13 2.89 16 23 N -0.58 -7.73 10.47 -13.81 -0.14 -7.87 16 24 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 25 H 0.07 1.28 6.62 -51.93 -0.34 0.93 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 29 H 0.03 0.43 6.86 -51.93 -0.36 0.08 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.07 0.98 7.97 -51.93 -0.41 0.56 16 34 H 0.07 1.01 7.97 -51.93 -0.41 0.60 16 35 H 0.41 5.42 6.29 -40.82 -0.26 5.17 16 36 H 0.15 1.85 6.49 -52.49 -0.34 1.51 16 37 H 0.13 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.20 1.57 8.06 -52.48 -0.42 1.15 16 LS Contribution 320.56 15.07 4.83 4.83 Total: -1.00 -29.15 320.56 -7.71 -36.87 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -4.79 Total: 2.03 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: -2.98 Total: -5.59 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: 0.17 Total: -49.37 kcal Atomic # 9 Polarization: -4.44 SS G_CDS: 0.08 Total: -4.37 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.15 -7.71 -36.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893865472.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.854 kcal (2) G-P(sol) polarization free energy of solvation -29.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds