Wall clock time and date at job start Tue Mar 31 2020 05:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47096 * 2 1 4 4 C 1.53003 * 109.47057 * 240.00148 * 2 1 3 5 5 C 1.50695 * 109.47110 * 59.99655 * 4 2 1 6 6 H 1.07996 * 120.00230 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00074 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99695 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00142 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.46784 * 0.02562 * 9 7 5 11 11 H 1.48492 * 109.46909 * 120.00623 * 9 7 5 12 12 H 1.48506 * 109.46987 * 240.00476 * 9 7 5 13 13 C 1.53001 * 109.47135 * 120.00069 * 2 1 3 14 14 N 1.46499 * 109.47199 * 299.99920 * 13 2 1 15 15 C 1.38538 * 120.00132 * 180.02562 * 14 13 2 16 16 C 1.39672 * 120.52805 * 359.97438 * 15 14 13 17 17 C 1.38077 * 118.32665 * 179.97438 * 16 15 14 18 18 C 1.50706 * 120.39419 * 180.02562 * 17 16 15 19 19 F 1.39900 * 109.46715 * 209.99654 * 18 17 16 20 20 F 1.39897 * 109.47068 * 329.99565 * 18 17 16 21 21 N 1.32577 * 119.20531 * 0.27251 * 17 16 15 22 22 C 1.31759 * 121.00879 * 359.44705 * 21 17 16 23 23 N 1.31780 * 121.83574 * 0.56539 * 22 21 17 24 24 H 1.09002 * 109.46722 * 300.00220 * 1 2 3 25 25 H 1.08998 * 109.47039 * 59.99818 * 1 2 3 26 26 H 1.08995 * 109.47086 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47029 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47325 * 300.00007 * 3 2 1 29 29 H 1.09002 * 109.47515 * 60.00266 * 3 2 1 30 30 H 1.08996 * 109.47458 * 180.02562 * 4 2 1 31 31 H 1.09002 * 109.46906 * 300.00075 * 4 2 1 32 32 H 0.97005 * 120.00002 * 179.97438 * 8 7 5 33 33 H 1.08996 * 109.47092 * 179.97438 * 13 2 1 34 34 H 1.09002 * 109.47098 * 59.99759 * 13 2 1 35 35 H 0.97000 * 119.99825 * 0.02562 * 14 13 2 36 36 H 1.07991 * 120.83407 * 359.96081 * 16 15 14 37 37 H 1.09000 * 109.47161 * 89.99810 * 18 17 16 38 38 H 1.08008 * 119.08362 * 180.26657 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0109 -2.4797 6 1 0.9171 0.8674 -2.3806 7 6 1.8711 -0.4816 -3.7320 8 7 2.6273 -1.5508 -3.8526 9 14 1.2490 0.3994 -5.2572 10 1 0.4244 1.5664 -4.8529 11 1 2.4042 0.8661 -6.0650 12 1 0.4241 -0.5338 -6.0660 13 6 2.0401 -0.7213 1.2492 14 7 1.5518 -0.0307 2.4454 15 6 1.8869 -0.5037 3.7037 16 6 2.6891 -1.6383 3.8447 17 6 2.9955 -2.0697 5.1200 18 6 3.8580 -3.2883 5.3261 19 9 3.4969 -3.9182 6.5219 20 9 3.6760 -4.1743 4.2589 21 7 2.5179 -1.4020 6.1610 22 6 1.7677 -0.3317 5.9947 23 7 1.4504 0.1155 4.7964 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 3.1300 -0.7217 -1.2491 31 1 1.6767 -1.7489 -1.2493 32 1 2.8616 -1.8822 -4.7337 33 1 3.1300 -0.7217 1.2490 34 1 1.6767 -1.7489 1.2492 35 1 0.9938 0.7578 2.3564 36 1 3.0603 -2.1649 2.9780 37 1 4.9048 -2.9885 5.3750 38 1 1.3986 0.1911 6.8648 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893865472.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:43 Heat of formation + Delta-G solvation = -82.308482 kcal Electronic energy + Delta-G solvation = -22219.692291 eV Core-core repulsion = 18538.797918 eV Total energy + Delta-G solvation = -3680.894373 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.135 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.04286 -48.06209 -42.00419 -39.43407 -36.50313 -34.74508 -34.16447 -31.89933 -29.07814 -28.20241 -27.99987 -27.74712 -25.37835 -24.32977 -23.16855 -20.16975 -19.26663 -18.90354 -18.54975 -18.35070 -17.82711 -16.79441 -16.45455 -16.38979 -16.27704 -15.97473 -15.43337 -15.36384 -14.88935 -14.65649 -14.38686 -14.37914 -14.19105 -13.95734 -13.88401 -13.02848 -12.76444 -12.71293 -12.57828 -12.35820 -12.27441 -12.14630 -12.00836 -11.80786 -11.52851 -11.03434 -11.03044 -10.87117 -10.51095 -10.36290 -9.22450 -8.14646 -6.20883 -0.20316 0.20345 1.40643 1.43260 1.53377 1.89750 2.29658 2.44327 2.73595 3.08882 3.13993 3.20804 3.54954 3.79114 3.87085 3.90287 4.02579 4.04101 4.18759 4.38376 4.47983 4.65094 4.66471 4.67898 4.92642 5.04764 5.09841 5.17137 5.41360 5.48895 5.50408 5.54863 5.59521 5.78616 5.90092 6.09291 6.32771 6.48731 6.94020 7.14128 7.46766 8.97564 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.026039 B = 0.003480 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.063001 B = 8044.763941 C = 8897.432666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.063 4.063 3 C -0.123 4.123 4 C 0.041 3.959 5 C -0.514 4.514 6 H 0.068 0.932 7 C 0.000 4.000 8 N -0.934 5.934 9 Si 0.951 3.049 10 H -0.261 1.261 11 H -0.284 1.284 12 H -0.285 1.285 13 C 0.140 3.860 14 N -0.688 5.688 15 C 0.435 3.565 16 C -0.270 4.270 17 C 0.121 3.879 18 C 0.327 3.673 19 F -0.196 7.196 20 F -0.199 7.199 21 N -0.559 5.559 22 C 0.341 3.659 23 N -0.587 5.587 24 H 0.060 0.940 25 H 0.052 0.948 26 H 0.041 0.959 27 H 0.043 0.957 28 H 0.052 0.948 29 H 0.060 0.940 30 H -0.005 1.005 31 H -0.007 1.007 32 H 0.260 0.740 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.413 0.587 36 H 0.154 0.846 37 H 0.175 0.825 38 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.940 1.767 18.264 18.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.064 4.064 3 C -0.180 4.180 4 C 0.004 3.996 5 C -0.553 4.553 6 H 0.086 0.914 7 C -0.197 4.197 8 N -0.575 5.575 9 Si 0.778 3.222 10 H -0.185 1.185 11 H -0.210 1.210 12 H -0.211 1.211 13 C 0.016 3.984 14 N -0.320 5.320 15 C 0.189 3.811 16 C -0.299 4.299 17 C -0.023 4.023 18 C 0.273 3.727 19 F -0.177 7.177 20 F -0.180 7.180 21 N -0.279 5.279 22 C 0.052 3.948 23 N -0.312 5.312 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.013 0.987 31 H 0.011 0.989 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.252 0.748 36 H 0.172 0.828 37 H 0.191 0.809 38 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 0.735 1.983 18.714 18.833 hybrid contribution -0.152 -0.188 -2.050 2.064 sum 0.583 1.795 16.665 16.771 Atomic orbital electron populations 1.21704 0.94180 1.01036 1.01171 1.20685 0.96287 0.96226 0.93173 1.21695 1.00216 0.94917 1.01170 1.18961 0.94728 0.94301 0.91627 1.21614 1.30336 1.12013 0.91300 0.91442 1.25830 0.95691 0.95832 1.02364 1.70090 1.38686 1.24772 1.24000 0.85595 0.78083 0.78839 0.79728 1.18497 1.21028 1.21111 1.21571 0.98798 0.95705 0.82348 1.44740 1.54109 1.32148 1.00974 1.18686 0.87473 0.88111 0.86845 1.21974 1.07047 1.01078 0.99768 1.22000 0.94573 0.95997 0.89698 1.20458 1.00613 0.80532 0.71130 1.93009 1.94067 1.83730 1.46901 1.93030 1.97097 1.70799 1.57113 1.68132 1.15392 1.10623 1.33703 1.25368 0.87543 0.87898 0.93981 1.68057 1.28964 1.35082 0.99051 0.92101 0.92846 0.94006 0.93763 0.92896 0.92072 0.98667 0.98883 0.93162 0.91336 0.91833 0.74848 0.82812 0.80858 0.75070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.00 8.05 71.98 0.58 -3.42 16 2 C -0.06 -2.17 0.54 -52.18 -0.03 -2.20 16 3 C -0.12 -3.91 8.05 71.98 0.58 -3.33 16 4 C 0.04 1.94 4.04 29.85 0.12 2.06 16 5 C -0.51 -26.41 7.65 25.60 0.20 -26.22 16 6 H 0.07 3.31 5.68 -2.91 -0.02 3.29 16 7 C 0.00 0.00 5.46 84.66 0.46 0.47 16 8 N -0.93 -54.42 13.29 21.45 0.28 -54.14 16 9 Si 0.95 42.52 29.54 68.60 2.03 44.54 16 10 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 12 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 13 C 0.14 4.04 3.82 86.38 0.33 4.37 16 14 N -0.69 -17.47 5.11 -344.58 -1.76 -19.23 16 15 C 0.43 11.23 7.71 133.18 1.03 12.26 16 16 C -0.27 -6.62 8.74 22.58 0.20 -6.42 16 17 C 0.12 2.79 6.60 42.41 0.28 3.07 16 18 C 0.33 6.13 5.74 71.24 0.41 6.54 16 19 F -0.20 -4.40 17.09 44.97 0.77 -3.63 16 20 F -0.20 -4.41 16.55 44.97 0.74 -3.66 16 21 N -0.56 -13.10 10.09 -188.34 -1.90 -15.00 16 22 C 0.34 7.19 12.28 180.90 2.22 9.41 16 23 N -0.59 -14.47 10.47 -197.59 -2.07 -16.54 16 24 H 0.06 1.60 6.86 -2.39 -0.02 1.58 16 25 H 0.05 1.90 6.62 -2.39 -0.02 1.88 16 26 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.05 1.86 6.62 -2.39 -0.02 1.84 16 29 H 0.06 1.57 6.86 -2.39 -0.02 1.56 16 30 H -0.01 -0.26 8.14 -2.39 -0.02 -0.28 16 31 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 32 H 0.26 14.39 8.31 -92.70 -0.77 13.62 16 33 H 0.07 1.97 7.97 -2.39 -0.02 1.95 16 34 H 0.06 1.89 7.97 -2.39 -0.02 1.87 16 35 H 0.41 9.89 6.29 -92.71 -0.58 9.31 16 36 H 0.15 3.63 6.49 -2.91 -0.02 3.61 16 37 H 0.17 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.23 2.95 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -62.91 320.56 4.97 -57.93 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: 0.51 Total: 13.15 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: 6.37 Total: -3.41 kcal Atomic # 7 Polarization: -99.46 SS G_CDS: -5.45 Total: -104.91 kcal Atomic # 9 Polarization: -8.81 SS G_CDS: 1.51 Total: -7.30 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.54 kcal Total: -62.91 4.97 -57.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893865472.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.378 kcal (2) G-P(sol) polarization free energy of solvation -62.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds