Wall clock time and date at job start Tue Mar 31 2020 05:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47232 * 2 1 4 4 C 1.53002 * 109.47048 * 240.00074 * 2 1 3 5 5 O 1.45200 * 109.47447 * 120.00222 * 2 1 3 6 6 C 1.34231 * 116.99989 * 59.99918 * 5 2 1 7 7 O 1.20831 * 119.99995 * 0.02562 * 6 5 2 8 8 C 1.50701 * 120.00101 * 180.02562 * 6 5 2 9 9 C 1.50701 * 110.41708 * 277.30787 * 8 6 5 10 10 O 1.21289 * 120.00276 * 262.68608 * 9 8 6 11 11 N 1.34783 * 120.00182 * 82.69034 * 9 8 6 12 12 C 1.37090 * 120.00175 * 179.97438 * 11 9 8 13 13 H 1.08000 * 120.00326 * 0.02562 * 12 11 9 14 14 C 1.38956 * 119.99779 * 180.02562 * 12 11 9 15 15 N 1.31405 * 120.00021 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99847 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47355 * 59.99279 * 16 14 12 18 18 H 1.48497 * 109.47134 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47037 * 299.99911 * 16 14 12 20 20 C 1.54477 * 110.37389 * 155.00098 * 8 6 5 21 21 C 1.54510 * 104.18108 * 217.25757 * 20 8 6 22 22 C 1.54478 * 104.06500 * 359.93120 * 21 20 8 23 23 O 1.44415 * 104.80258 * 23.97587 * 22 21 20 24 24 H 1.09004 * 109.46897 * 299.99351 * 1 2 3 25 25 H 1.08992 * 109.47392 * 60.00084 * 1 2 3 26 26 H 1.09007 * 109.46767 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47543 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47417 * 300.00324 * 3 2 1 29 29 H 1.08998 * 109.47091 * 60.00401 * 3 2 1 30 30 H 1.08994 * 109.47241 * 299.99848 * 4 2 1 31 31 H 1.09001 * 109.46807 * 60.00162 * 4 2 1 32 32 H 1.08998 * 109.47061 * 179.97438 * 4 2 1 33 33 H 0.97006 * 119.99623 * 0.02562 * 11 9 8 34 34 H 0.97004 * 119.99956 * 179.97438 * 15 14 12 35 35 H 1.09002 * 110.51371 * 98.54272 * 20 8 6 36 36 H 1.08994 * 110.51108 * 335.96920 * 20 8 6 37 37 H 1.09000 * 110.51039 * 118.57850 * 21 20 8 38 38 H 1.09007 * 110.50911 * 241.14516 * 21 20 8 39 39 H 1.08998 * 110.37372 * 142.81215 * 22 21 20 40 40 H 1.09004 * 110.36996 * 265.03321 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6534 -1.9685 1.3378 7 8 0.9567 -2.5028 0.5077 8 6 2.1175 -2.7435 2.5440 9 6 3.5111 -3.2732 2.3244 10 8 3.6738 -4.4150 1.9490 11 7 4.5769 -2.4781 2.5451 12 6 5.8447 -2.9601 2.3457 13 1 5.9895 -3.9768 2.0114 14 6 6.9433 -2.1405 2.5738 15 7 6.7671 -0.9034 2.9801 16 14 8.6708 -2.7971 2.3015 17 1 8.8236 -3.2162 0.8851 18 1 9.6593 -1.7333 2.6119 19 1 8.9028 -3.9637 3.1905 20 6 1.1427 -3.9034 2.8457 21 6 1.0907 -3.9625 4.3888 22 6 2.0419 -2.8320 4.8401 23 8 2.0762 -1.9124 3.7271 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1301 1.4425 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 -1.7489 -1.2493 31 1 1.6766 -0.2073 -2.1392 32 1 3.1299 -0.7208 -1.2495 33 1 4.4468 -1.5651 2.8457 34 1 7.5341 -0.3313 3.1396 35 1 1.5261 -4.8397 2.4403 36 1 0.1550 -3.6879 2.4382 37 1 0.0777 -3.7739 4.7443 38 1 1.4461 -4.9290 4.7462 39 1 1.6493 -2.3379 5.7287 40 1 3.0376 -3.2298 5.0367 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900464029.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:27 Heat of formation + Delta-G solvation = -168.858545 kcal Electronic energy + Delta-G solvation = -24568.613254 eV Core-core repulsion = 20962.760554 eV Total energy + Delta-G solvation = -3605.852701 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.92103 -39.40877 -37.23502 -36.67315 -34.15506 -33.82342 -31.83744 -31.21621 -29.72561 -27.28454 -27.21911 -25.45614 -24.10317 -22.36581 -21.00467 -19.92627 -18.92288 -18.08787 -17.39051 -16.73405 -16.38434 -15.57402 -15.37640 -15.04580 -14.70190 -14.13715 -14.02296 -13.69986 -13.49459 -13.29697 -13.06707 -12.85070 -12.34751 -12.05463 -11.78567 -11.74635 -11.72677 -11.54187 -11.48981 -11.25407 -11.21472 -11.14197 -10.96314 -10.58342 -10.49515 -10.28439 -10.14226 -10.01739 -9.77981 -9.60494 -8.39551 -8.08867 -6.52239 -3.93184 2.36197 2.78132 3.15220 3.20678 3.24808 3.75277 3.92785 4.08827 4.65893 4.79708 4.85659 4.89656 4.95378 5.06257 5.15358 5.23879 5.35581 5.55701 5.58689 5.65543 5.79650 5.82366 5.86494 5.91618 5.97657 5.99729 6.07913 6.14750 6.17341 6.22577 6.36308 6.37335 6.47312 6.75573 6.85958 7.43962 7.91608 8.09504 8.46942 9.02799 9.39858 9.89490 10.63104 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.014001 B = 0.007128 C = 0.005520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.324253 B = 3927.221343 C = 5071.173499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.113 3.887 3 C -0.140 4.140 4 C -0.184 4.184 5 O -0.328 6.328 6 C 0.498 3.502 7 O -0.496 6.496 8 C 0.103 3.897 9 C 0.417 3.583 10 O -0.582 6.582 11 N -0.525 5.525 12 C -0.308 4.308 13 H 0.106 0.894 14 C 0.030 3.970 15 N -0.882 5.882 16 Si 0.933 3.067 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.271 1.271 20 C -0.122 4.122 21 C -0.151 4.151 22 C 0.042 3.958 23 O -0.347 6.347 24 H 0.061 0.939 25 H 0.068 0.932 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.402 0.598 34 H 0.276 0.724 35 H 0.106 0.894 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.097 0.903 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.593 3.450 -0.495 11.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.077 3.923 3 C -0.197 4.197 4 C -0.241 4.241 5 O -0.244 6.244 6 C 0.340 3.660 7 O -0.384 6.384 8 C 0.059 3.941 9 C 0.200 3.800 10 O -0.468 6.468 11 N -0.159 5.159 12 C -0.437 4.437 13 H 0.124 0.876 14 C -0.174 4.174 15 N -0.522 5.522 16 Si 0.759 3.241 17 H -0.197 1.197 18 H -0.207 1.207 19 H -0.196 1.196 20 C -0.160 4.160 21 C -0.188 4.188 22 C -0.034 4.034 23 O -0.266 6.266 24 H 0.080 0.920 25 H 0.087 0.913 26 H 0.100 0.900 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.237 0.763 34 H 0.086 0.914 35 H 0.125 0.875 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.115 0.885 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.534 3.004 -0.958 10.996 hybrid contribution 0.787 0.182 -0.026 0.808 sum -9.747 3.187 -0.985 10.302 Atomic orbital electron populations 1.22473 0.94333 1.04493 1.02462 1.22200 0.94096 0.92589 0.83420 1.21827 1.02842 0.92418 1.02582 1.22496 1.02376 1.02929 0.96326 1.86685 1.69060 1.24488 1.44196 1.22716 0.76226 0.80593 0.86477 1.90546 1.35138 1.69845 1.42856 1.22477 0.97335 0.89917 0.84384 1.19310 0.84756 0.87416 0.88469 1.90534 1.84608 1.18488 1.53190 1.41859 1.04788 1.14144 1.55146 1.19762 0.81043 0.99776 1.43142 0.87635 1.25372 1.00541 0.95164 0.96364 1.69644 1.32603 1.06208 1.43702 0.85883 0.80585 0.78356 0.79227 1.19690 1.20727 1.19639 1.22730 0.98511 0.98856 0.95880 1.22935 1.00476 1.00147 0.95285 1.23506 0.99806 0.90237 0.89899 1.89244 1.95088 1.28705 1.13525 0.91989 0.91256 0.89995 0.91015 0.90691 0.91457 0.89896 0.91318 0.91532 0.76261 0.91411 0.87549 0.89903 0.90621 0.89971 0.88532 0.91200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.44 8.37 37.16 0.31 -2.13 16 2 C 0.11 1.77 1.13 -90.62 -0.10 1.67 16 3 C -0.14 -1.81 8.85 37.16 0.33 -1.48 16 4 C -0.18 -2.87 8.37 37.16 0.31 -2.56 16 5 O -0.33 -6.42 9.75 -43.47 -0.42 -6.84 16 6 C 0.50 10.22 6.13 36.01 0.22 10.44 16 7 O -0.50 -10.12 11.47 -18.75 -0.22 -10.33 16 8 C 0.10 2.15 1.05 -92.15 -0.10 2.05 16 9 C 0.42 10.43 6.08 -10.98 -0.07 10.36 16 10 O -0.58 -16.09 15.20 5.55 0.08 -16.01 16 11 N -0.53 -13.85 5.21 -10.96 -0.06 -13.91 16 12 C -0.31 -8.57 9.68 -14.93 -0.14 -8.71 16 13 H 0.11 3.04 7.16 -52.49 -0.38 2.66 16 14 C 0.03 0.79 5.50 -17.47 -0.10 0.69 16 15 N -0.88 -23.74 13.05 55.50 0.72 -23.01 16 16 Si 0.93 20.59 29.55 -169.99 -5.02 15.57 16 17 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 18 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 19 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 20 C -0.12 -2.16 5.76 -25.16 -0.14 -2.30 16 21 C -0.15 -2.17 7.09 -25.16 -0.18 -2.34 16 22 C 0.04 0.68 7.28 37.93 0.28 0.95 16 23 O -0.35 -6.76 10.51 -44.96 -0.47 -7.23 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.08 1.25 5.89 -51.93 -0.31 0.94 16 27 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.08 1.46 5.89 -51.93 -0.31 1.15 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.40 10.61 7.52 -40.82 -0.31 10.30 16 34 H 0.28 6.97 8.31 -40.82 -0.34 6.63 16 35 H 0.11 2.05 6.84 -51.93 -0.36 1.69 16 36 H 0.08 1.35 7.41 -51.93 -0.38 0.96 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.08 1.09 8.14 -51.92 -0.42 0.67 16 39 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.07 1.23 7.94 -51.93 -0.41 0.82 16 LS Contribution 329.74 15.07 4.97 4.97 Total: -1.00 -31.04 329.74 -5.60 -36.64 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: -5.81 Total: 13.52 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: 0.62 Total: 6.63 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.67 Total: -36.92 kcal Atomic # 8 Polarization: -39.38 SS G_CDS: -1.03 Total: -40.41 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.04 -5.60 -36.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900464029.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.217 kcal (2) G-P(sol) polarization free energy of solvation -31.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds