Wall clock time and date at job start Tue Mar 31 2020 05:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47232 * 2 1 4 4 C 1.53002 * 109.47048 * 240.00074 * 2 1 3 5 5 O 1.45200 * 109.47447 * 120.00222 * 2 1 3 6 6 C 1.34231 * 116.99989 * 59.99918 * 5 2 1 7 7 O 1.20831 * 119.99995 * 0.02562 * 6 5 2 8 8 C 1.50701 * 120.00101 * 180.02562 * 6 5 2 9 9 C 1.50701 * 110.41708 * 277.30787 * 8 6 5 10 10 O 1.21289 * 120.00276 * 262.68608 * 9 8 6 11 11 N 1.34783 * 120.00182 * 82.69034 * 9 8 6 12 12 C 1.37090 * 120.00175 * 179.97438 * 11 9 8 13 13 H 1.08000 * 120.00326 * 0.02562 * 12 11 9 14 14 C 1.38956 * 119.99779 * 180.02562 * 12 11 9 15 15 N 1.31405 * 120.00021 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99847 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47355 * 59.99279 * 16 14 12 18 18 H 1.48497 * 109.47134 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47037 * 299.99911 * 16 14 12 20 20 C 1.54477 * 110.37389 * 155.00098 * 8 6 5 21 21 C 1.54510 * 104.18108 * 217.25757 * 20 8 6 22 22 C 1.54478 * 104.06500 * 359.93120 * 21 20 8 23 23 O 1.44415 * 104.80258 * 23.97587 * 22 21 20 24 24 H 1.09004 * 109.46897 * 299.99351 * 1 2 3 25 25 H 1.08992 * 109.47392 * 60.00084 * 1 2 3 26 26 H 1.09007 * 109.46767 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47543 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47417 * 300.00324 * 3 2 1 29 29 H 1.08998 * 109.47091 * 60.00401 * 3 2 1 30 30 H 1.08994 * 109.47241 * 299.99848 * 4 2 1 31 31 H 1.09001 * 109.46807 * 60.00162 * 4 2 1 32 32 H 1.08998 * 109.47061 * 179.97438 * 4 2 1 33 33 H 0.97006 * 119.99623 * 0.02562 * 11 9 8 34 34 H 0.97004 * 119.99956 * 179.97438 * 15 14 12 35 35 H 1.09002 * 110.51371 * 98.54272 * 20 8 6 36 36 H 1.08994 * 110.51108 * 335.96920 * 20 8 6 37 37 H 1.09000 * 110.51039 * 118.57850 * 21 20 8 38 38 H 1.09007 * 110.50911 * 241.14516 * 21 20 8 39 39 H 1.08998 * 110.37372 * 142.81215 * 22 21 20 40 40 H 1.09004 * 110.36996 * 265.03321 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6534 -1.9685 1.3378 7 8 0.9567 -2.5028 0.5077 8 6 2.1175 -2.7435 2.5440 9 6 3.5111 -3.2732 2.3244 10 8 3.6738 -4.4150 1.9490 11 7 4.5769 -2.4781 2.5451 12 6 5.8447 -2.9601 2.3457 13 1 5.9895 -3.9768 2.0114 14 6 6.9433 -2.1405 2.5738 15 7 6.7671 -0.9034 2.9801 16 14 8.6708 -2.7971 2.3015 17 1 8.8236 -3.2162 0.8851 18 1 9.6593 -1.7333 2.6119 19 1 8.9028 -3.9637 3.1905 20 6 1.1427 -3.9034 2.8457 21 6 1.0907 -3.9625 4.3888 22 6 2.0419 -2.8320 4.8401 23 8 2.0762 -1.9124 3.7271 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1301 1.4425 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 -1.7489 -1.2493 31 1 1.6766 -0.2073 -2.1392 32 1 3.1299 -0.7208 -1.2495 33 1 4.4468 -1.5651 2.8457 34 1 7.5341 -0.3313 3.1396 35 1 1.5261 -4.8397 2.4403 36 1 0.1550 -3.6879 2.4382 37 1 0.0777 -3.7739 4.7443 38 1 1.4461 -4.9290 4.7462 39 1 1.6493 -2.3379 5.7287 40 1 3.0376 -3.2298 5.0367 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900464029.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:26 Heat of formation + Delta-G solvation = -189.604641 kcal Electronic energy + Delta-G solvation = -24569.512873 eV Core-core repulsion = 20962.760554 eV Total energy + Delta-G solvation = -3606.752319 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.46639 -40.97976 -39.07949 -38.13131 -36.20564 -35.14081 -33.52804 -32.99351 -31.24453 -28.42566 -28.32244 -27.39725 -25.64441 -23.92616 -22.44747 -21.39587 -20.63199 -20.06282 -18.93517 -18.50875 -17.77170 -17.19597 -16.89463 -16.52136 -16.37977 -15.90693 -15.48530 -15.16089 -15.00048 -14.75669 -14.63624 -14.56860 -13.62000 -13.45605 -13.17892 -13.06375 -12.99315 -12.97048 -12.91118 -12.84540 -12.56669 -12.53477 -12.51754 -12.24726 -12.14498 -11.90399 -11.62552 -11.47285 -11.42032 -11.22557 -10.32305 -10.16753 -8.56382 -6.08088 0.73673 1.23681 1.39275 1.45004 1.51351 1.90425 2.22548 2.48790 2.85692 3.09476 3.47618 3.50442 3.68867 3.75998 3.90704 3.93255 4.01584 4.09564 4.24578 4.51450 4.55960 4.57340 4.71751 4.72430 4.77301 4.82077 4.84028 4.86652 4.92276 5.04643 5.06410 5.21590 5.24190 5.30399 5.36828 5.45087 5.83248 6.39736 6.57466 6.94529 7.33048 7.84722 8.59207 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.014001 B = 0.007128 C = 0.005520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.324253 B = 3927.221343 C = 5071.173499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.096 3.904 3 C -0.135 4.135 4 C -0.181 4.181 5 O -0.345 6.345 6 C 0.494 3.506 7 O -0.500 6.500 8 C 0.103 3.897 9 C 0.415 3.585 10 O -0.616 6.616 11 N -0.532 5.532 12 C -0.347 4.347 13 H 0.086 0.914 14 C -0.003 4.003 15 N -0.903 5.903 16 Si 0.999 3.001 17 H -0.271 1.271 18 H -0.265 1.265 19 H -0.266 1.266 20 C -0.122 4.122 21 C -0.139 4.139 22 C 0.032 3.968 23 O -0.356 6.356 24 H 0.069 0.931 25 H 0.101 0.899 26 H 0.061 0.939 27 H 0.053 0.947 28 H 0.111 0.889 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.105 0.895 32 H 0.045 0.955 33 H 0.400 0.600 34 H 0.284 0.716 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.114 0.886 38 H 0.091 0.909 39 H 0.137 0.863 40 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.481 4.634 -0.260 12.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.061 3.939 3 C -0.192 4.192 4 C -0.238 4.238 5 O -0.261 6.261 6 C 0.336 3.664 7 O -0.389 6.389 8 C 0.058 3.942 9 C 0.200 3.800 10 O -0.504 6.504 11 N -0.166 5.166 12 C -0.476 4.476 13 H 0.104 0.896 14 C -0.206 4.206 15 N -0.541 5.541 16 Si 0.821 3.179 17 H -0.196 1.196 18 H -0.189 1.189 19 H -0.191 1.191 20 C -0.160 4.160 21 C -0.176 4.176 22 C -0.044 4.044 23 O -0.275 6.275 24 H 0.088 0.912 25 H 0.120 0.880 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.129 0.871 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.124 0.876 32 H 0.064 0.936 33 H 0.234 0.766 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.117 0.883 37 H 0.133 0.867 38 H 0.110 0.890 39 H 0.154 0.846 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.436 4.211 -0.711 12.207 hybrid contribution 1.031 -0.136 -0.122 1.047 sum -10.405 4.076 -0.832 11.206 Atomic orbital electron populations 1.22418 0.92337 1.03768 1.04453 1.22732 0.95850 0.93459 0.81896 1.21872 1.01750 0.90835 1.04694 1.22477 1.01018 1.02089 0.98237 1.86667 1.69291 1.24039 1.46150 1.22640 0.76406 0.81124 0.86214 1.90537 1.35468 1.70112 1.42737 1.22363 0.94991 0.91359 0.85478 1.20058 0.86285 0.86835 0.86791 1.90493 1.85767 1.19936 1.54247 1.41900 1.04994 1.14063 1.55604 1.19800 0.82486 0.99644 1.45672 0.89587 1.26226 1.03992 0.95201 0.95143 1.69709 1.34122 1.06967 1.43336 0.84917 0.75692 0.78240 0.79058 1.19581 1.18946 1.19090 1.22787 0.98157 0.96500 0.98590 1.22969 1.02243 0.99981 0.92427 1.23797 0.99354 0.90942 0.90282 1.89239 1.94930 1.29477 1.13831 0.91217 0.88019 0.92004 0.92758 0.87054 0.90834 0.92379 0.87602 0.93573 0.76553 0.90660 0.89691 0.88297 0.86717 0.89015 0.84553 0.93719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.31 8.37 71.98 0.60 -3.71 16 2 C 0.10 2.90 1.13 -10.80 -0.01 2.89 16 3 C -0.13 -3.24 8.85 71.98 0.64 -2.60 16 4 C -0.18 -5.58 8.37 71.98 0.60 -4.97 16 5 O -0.35 -13.63 9.75 -47.39 -0.46 -14.09 16 6 C 0.49 20.60 6.13 71.24 0.44 21.04 16 7 O -0.50 -20.68 11.47 21.95 0.25 -20.43 16 8 C 0.10 4.34 1.05 -11.78 -0.01 4.33 16 9 C 0.42 21.62 6.08 87.66 0.53 22.16 16 10 O -0.62 -35.70 15.20 -3.06 -0.05 -35.75 16 11 N -0.53 -29.25 5.21 -306.98 -1.60 -30.85 16 12 C -0.35 -20.06 9.68 84.04 0.81 -19.25 16 13 H 0.09 5.21 7.16 -2.91 -0.02 5.19 16 14 C 0.00 -0.17 5.50 84.93 0.47 0.30 16 15 N -0.90 -48.91 13.05 21.66 0.28 -48.63 16 16 Si 1.00 42.24 29.55 68.60 2.03 44.27 16 17 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 18 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 19 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 20 C -0.12 -4.30 5.76 31.61 0.18 -4.12 16 21 C -0.14 -3.72 7.09 31.61 0.22 -3.49 16 22 C 0.03 0.99 7.28 72.48 0.53 1.52 16 23 O -0.36 -13.81 10.51 -139.67 -1.47 -15.28 16 24 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.06 1.81 5.89 -2.38 -0.01 1.80 16 27 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 28 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.06 2.07 5.89 -2.39 -0.01 2.06 16 31 H 0.11 2.38 8.14 -2.39 -0.02 2.37 16 32 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.40 21.95 7.52 -92.70 -0.70 21.26 16 34 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 35 H 0.08 3.35 6.84 -2.39 -0.02 3.33 16 36 H 0.10 3.12 7.41 -2.39 -0.02 3.10 16 37 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16 39 H 0.14 3.10 8.14 -2.39 -0.02 3.09 16 40 H 0.04 1.60 7.94 -2.38 -0.02 1.58 16 Total: -1.00 -70.09 329.74 4.35 -65.75 By element: Atomic # 1 Polarization: 40.56 SS G_CDS: 0.36 Total: 40.92 kcal Atomic # 6 Polarization: 9.09 SS G_CDS: 5.00 Total: 14.09 kcal Atomic # 7 Polarization: -78.16 SS G_CDS: -1.32 Total: -79.48 kcal Atomic # 8 Polarization: -83.82 SS G_CDS: -1.72 Total: -85.55 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -70.09 4.35 -65.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900464029.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.858 kcal (2) G-P(sol) polarization free energy of solvation -70.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds