Wall clock time and date at job start Tue Mar 31 2020 05:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47334 * 2 1 4 4 C 1.52994 * 109.47084 * 239.99196 * 2 1 3 5 5 O 1.45201 * 109.46861 * 119.99425 * 2 1 3 6 6 C 1.34232 * 117.00060 * 60.00151 * 5 2 1 7 7 O 1.20829 * 119.99774 * 359.97438 * 6 5 2 8 8 C 1.50700 * 120.00102 * 179.97438 * 6 5 2 9 9 C 1.50706 * 109.86911 * 84.29627 * 8 6 5 10 10 O 1.21292 * 119.99873 * 96.00694 * 9 8 6 11 11 N 1.34777 * 120.00146 * 276.00967 * 9 8 6 12 12 C 1.37095 * 119.99970 * 180.02562 * 11 9 8 13 13 H 1.07999 * 119.99992 * 359.97438 * 12 11 9 14 14 C 1.38956 * 120.00025 * 179.97438 * 12 11 9 15 15 N 1.31411 * 119.99490 * 0.27571 * 14 12 11 16 16 Si 1.86800 * 119.99850 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47035 * 60.00382 * 16 14 12 18 18 H 1.48503 * 109.46845 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47237 * 300.00138 * 16 14 12 20 20 C 1.54092 * 109.87825 * 205.30427 * 8 6 5 21 21 C 1.54808 * 104.18905 * 121.60644 * 20 8 6 22 22 C 1.55001 * 102.09403 * 20.87753 * 21 20 8 23 23 O 1.43741 * 110.00332 * 323.21473 * 8 6 5 24 24 H 1.09004 * 109.47418 * 300.00653 * 1 2 3 25 25 H 1.09001 * 109.46767 * 60.00709 * 1 2 3 26 26 H 1.08993 * 109.47315 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47011 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.46614 * 299.99385 * 3 2 1 29 29 H 1.08994 * 109.47590 * 59.99424 * 3 2 1 30 30 H 1.08996 * 109.47476 * 299.99946 * 4 2 1 31 31 H 1.09001 * 109.47012 * 60.00886 * 4 2 1 32 32 H 1.09007 * 109.47094 * 179.97438 * 4 2 1 33 33 H 0.96999 * 120.00043 * 359.97438 * 11 9 8 34 34 H 0.96991 * 120.00673 * 359.71788 * 15 14 12 35 35 H 1.08999 * 110.48762 * 240.27897 * 20 8 6 36 36 H 1.09001 * 110.48856 * 2.92943 * 20 8 6 37 37 H 1.09003 * 110.91367 * 139.08054 * 21 20 8 38 38 H 1.09000 * 110.90826 * 262.68047 * 21 20 8 39 39 H 1.08998 * 110.61360 * 81.47750 * 22 21 20 40 40 H 1.08991 * 110.61895 * 204.32163 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 8 2.0139 -0.6844 1.1857 6 6 1.6533 -1.9683 1.3381 7 8 0.9558 -2.5025 0.5085 8 6 2.1181 -2.7436 2.5439 9 6 1.1937 -2.4861 3.7059 10 8 0.2897 -3.2589 3.9445 11 7 1.3714 -1.3973 4.4801 12 6 0.5307 -1.1634 5.5375 13 1 -0.2742 -1.8515 5.7499 14 6 0.7142 -0.0411 6.3360 15 7 1.6903 0.7989 6.0742 16 14 -0.4317 0.2779 7.7763 17 1 -0.3554 -0.8575 8.7304 18 1 -0.0255 1.5298 8.4641 19 1 -1.8246 0.4146 7.2799 20 6 2.1455 -4.2498 2.2198 21 6 3.6154 -4.6654 2.4716 22 6 4.1176 -3.5338 3.4043 23 8 3.4583 -2.3565 2.8906 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 3.1301 1.4425 -0.0005 28 1 1.6768 1.9563 -0.8901 29 1 1.6767 1.9564 0.8899 30 1 1.6767 -1.7490 -1.2490 31 1 1.6767 -0.2076 -2.1391 32 1 3.1300 -0.7210 -1.2493 33 1 2.0945 -0.7795 4.2895 34 1 2.2851 0.6335 5.3262 35 1 1.4757 -4.7953 2.8844 36 1 1.8738 -4.4209 1.1781 37 1 3.6660 -5.6327 2.9715 38 1 4.1804 -4.6808 1.5397 39 1 3.8164 -3.7236 4.4345 40 1 5.2005 -3.4315 3.3349 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900464030.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:30 Heat of formation + Delta-G solvation = -168.336260 kcal Electronic energy + Delta-G solvation = -24610.621911 eV Core-core repulsion = 21004.791858 eV Total energy + Delta-G solvation = -3605.830053 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.04174 -39.47185 -37.46887 -36.75593 -34.49102 -33.90607 -31.95410 -31.10488 -29.80089 -27.35092 -27.28400 -25.09727 -24.08541 -22.52736 -21.22430 -20.10311 -19.11286 -18.03636 -17.62965 -17.11597 -16.46901 -15.79165 -15.47003 -15.07173 -14.70638 -14.22003 -13.82521 -13.77840 -13.60136 -13.49611 -13.34841 -12.98891 -12.41420 -12.12013 -11.86077 -11.81035 -11.75570 -11.63741 -11.36007 -11.31311 -11.14891 -11.11314 -10.99057 -10.72228 -10.26733 -10.23426 -10.21040 -9.94820 -9.77848 -9.62708 -8.43325 -8.13395 -6.85607 -3.97578 2.29071 2.71560 3.26513 3.31152 3.51594 3.70559 3.79556 4.16788 4.54397 4.69597 4.77434 4.82311 4.87253 4.99137 5.05306 5.15056 5.27300 5.45121 5.52085 5.59734 5.67831 5.72828 5.77685 5.81637 5.87767 5.91657 5.94595 5.98209 6.07789 6.15123 6.27041 6.29629 6.41353 6.67681 6.78918 7.68906 7.98733 8.02323 8.47708 8.65295 9.35989 9.72571 10.56841 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.014194 B = 0.007042 C = 0.005524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.207884 B = 3975.389033 C = 5067.831729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.112 3.888 3 C -0.140 4.140 4 C -0.180 4.180 5 O -0.330 6.330 6 C 0.492 3.508 7 O -0.495 6.495 8 C 0.107 3.893 9 C 0.420 3.580 10 O -0.577 6.577 11 N -0.537 5.537 12 C -0.387 4.387 13 H 0.102 0.898 14 C -0.003 4.003 15 N -0.884 5.884 16 Si 1.092 2.908 17 H -0.282 1.282 18 H -0.277 1.277 19 H -0.282 1.282 20 C -0.130 4.130 21 C -0.153 4.153 22 C 0.043 3.957 23 O -0.349 6.349 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.386 0.614 34 H 0.267 0.733 35 H 0.107 0.893 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.148 -2.606 -10.719 12.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.076 3.924 3 C -0.197 4.197 4 C -0.237 4.237 5 O -0.247 6.247 6 C 0.334 3.666 7 O -0.383 6.383 8 C 0.062 3.938 9 C 0.204 3.796 10 O -0.463 6.463 11 N -0.172 5.172 12 C -0.516 4.516 13 H 0.120 0.880 14 C -0.208 4.208 15 N -0.521 5.521 16 Si 0.917 3.083 17 H -0.208 1.208 18 H -0.202 1.202 19 H -0.208 1.208 20 C -0.168 4.168 21 C -0.191 4.191 22 C -0.033 4.033 23 O -0.268 6.268 24 H 0.084 0.916 25 H 0.088 0.912 26 H 0.101 0.899 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.221 0.779 34 H 0.079 0.921 35 H 0.126 0.874 36 H 0.111 0.889 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.108 -1.925 -9.589 10.608 hybrid contribution 0.645 -0.855 -1.517 1.857 sum 4.753 -2.781 -11.106 12.396 Atomic orbital electron populations 1.22496 0.94043 1.04801 1.02798 1.22217 0.94539 0.92500 0.83110 1.21832 1.02177 0.92588 1.03084 1.22468 1.01612 1.03005 0.96636 1.86667 1.68705 1.24709 1.44586 1.22951 0.77300 0.80870 0.85476 1.90538 1.35424 1.70456 1.41889 1.22187 0.85396 0.94874 0.91334 1.19250 0.88642 0.85403 0.86290 1.90541 1.34824 1.48182 1.72763 1.41900 1.28475 1.20834 1.26008 1.20659 1.12353 1.11738 1.06845 0.87996 1.26643 0.99972 0.91796 1.02349 1.70844 1.15640 1.36351 1.29289 0.83140 0.74409 0.76713 0.74049 1.20783 1.20184 1.20821 1.22888 0.97823 0.91061 1.05034 1.23178 0.95684 0.99752 1.00487 1.23673 0.98001 0.83935 0.97695 1.88966 1.21952 1.32778 1.83101 0.91594 0.91218 0.89892 0.91454 0.90580 0.91099 0.89996 0.91194 0.92007 0.77944 0.92112 0.87425 0.88859 0.89568 0.90488 0.91325 0.88278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.87 8.37 37.16 0.31 -2.55 16 2 C 0.11 1.73 1.13 -90.62 -0.10 1.63 16 3 C -0.14 -1.77 8.85 37.16 0.33 -1.45 16 4 C -0.18 -2.40 8.37 37.15 0.31 -2.09 16 5 O -0.33 -6.35 9.69 -44.05 -0.43 -6.78 16 6 C 0.49 9.99 6.14 36.01 0.22 10.21 16 7 O -0.50 -10.04 11.10 -18.75 -0.21 -10.25 16 8 C 0.11 2.20 1.04 -92.35 -0.10 2.10 16 9 C 0.42 10.59 6.61 -10.98 -0.07 10.52 16 10 O -0.58 -16.20 15.13 5.55 0.08 -16.12 16 11 N -0.54 -14.20 5.20 -10.96 -0.06 -14.26 16 12 C -0.39 -10.95 9.68 -14.93 -0.14 -11.10 16 13 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 14 C 0.00 -0.07 5.50 -17.47 -0.10 -0.17 16 15 N -0.88 -24.75 13.68 55.50 0.76 -23.99 16 16 Si 1.09 23.93 29.92 -169.99 -5.09 18.85 16 17 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 18 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 19 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 20 C -0.13 -2.27 6.00 -25.21 -0.15 -2.43 16 21 C -0.15 -2.05 7.15 -24.72 -0.18 -2.22 16 22 C 0.04 0.65 7.66 38.21 0.29 0.94 16 23 O -0.35 -6.64 10.09 -47.48 -0.48 -7.11 16 24 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 25 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.08 1.47 5.89 -51.93 -0.31 1.16 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.08 1.23 5.89 -51.93 -0.31 0.93 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.39 9.91 6.25 -40.82 -0.26 9.65 16 34 H 0.27 7.38 6.77 -40.82 -0.28 7.11 16 35 H 0.11 2.05 6.72 -51.93 -0.35 1.70 16 36 H 0.09 1.56 6.79 -51.93 -0.35 1.21 16 37 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 327.68 15.07 4.94 4.94 Total: -1.00 -32.59 327.68 -5.52 -38.11 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -5.67 Total: 13.21 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: 0.62 Total: 3.40 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.70 Total: -38.24 kcal Atomic # 8 Polarization: -39.23 SS G_CDS: -1.03 Total: -40.26 kcal Atomic # 14 Polarization: 23.93 SS G_CDS: -5.09 Total: 18.85 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.59 -5.52 -38.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900464030.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.229 kcal (2) G-P(sol) polarization free energy of solvation -32.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds