Wall clock time and date at job start Tue Mar 31 2020 05:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47334 * 2 1 4 4 C 1.52994 * 109.47084 * 239.99196 * 2 1 3 5 5 O 1.45201 * 109.46861 * 119.99425 * 2 1 3 6 6 C 1.34232 * 117.00060 * 60.00151 * 5 2 1 7 7 O 1.20829 * 119.99774 * 359.97438 * 6 5 2 8 8 C 1.50700 * 120.00102 * 179.97438 * 6 5 2 9 9 C 1.50706 * 109.86911 * 84.29627 * 8 6 5 10 10 O 1.21292 * 119.99873 * 96.00694 * 9 8 6 11 11 N 1.34777 * 120.00146 * 276.00967 * 9 8 6 12 12 C 1.37095 * 119.99970 * 180.02562 * 11 9 8 13 13 H 1.07999 * 119.99992 * 359.97438 * 12 11 9 14 14 C 1.38956 * 120.00025 * 179.97438 * 12 11 9 15 15 N 1.31411 * 119.99490 * 0.27571 * 14 12 11 16 16 Si 1.86800 * 119.99850 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47035 * 60.00382 * 16 14 12 18 18 H 1.48503 * 109.46845 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47237 * 300.00138 * 16 14 12 20 20 C 1.54092 * 109.87825 * 205.30427 * 8 6 5 21 21 C 1.54808 * 104.18905 * 121.60644 * 20 8 6 22 22 C 1.55001 * 102.09403 * 20.87753 * 21 20 8 23 23 O 1.43741 * 110.00332 * 323.21473 * 8 6 5 24 24 H 1.09004 * 109.47418 * 300.00653 * 1 2 3 25 25 H 1.09001 * 109.46767 * 60.00709 * 1 2 3 26 26 H 1.08993 * 109.47315 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47011 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.46614 * 299.99385 * 3 2 1 29 29 H 1.08994 * 109.47590 * 59.99424 * 3 2 1 30 30 H 1.08996 * 109.47476 * 299.99946 * 4 2 1 31 31 H 1.09001 * 109.47012 * 60.00886 * 4 2 1 32 32 H 1.09007 * 109.47094 * 179.97438 * 4 2 1 33 33 H 0.96999 * 120.00043 * 359.97438 * 11 9 8 34 34 H 0.96991 * 120.00673 * 359.71788 * 15 14 12 35 35 H 1.08999 * 110.48762 * 240.27897 * 20 8 6 36 36 H 1.09001 * 110.48856 * 2.92943 * 20 8 6 37 37 H 1.09003 * 110.91367 * 139.08054 * 21 20 8 38 38 H 1.09000 * 110.90826 * 262.68047 * 21 20 8 39 39 H 1.08998 * 110.61360 * 81.47750 * 22 21 20 40 40 H 1.08991 * 110.61895 * 204.32163 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 8 2.0139 -0.6844 1.1857 6 6 1.6533 -1.9683 1.3381 7 8 0.9558 -2.5025 0.5085 8 6 2.1181 -2.7436 2.5439 9 6 1.1937 -2.4861 3.7059 10 8 0.2897 -3.2589 3.9445 11 7 1.3714 -1.3973 4.4801 12 6 0.5307 -1.1634 5.5375 13 1 -0.2742 -1.8515 5.7499 14 6 0.7142 -0.0411 6.3360 15 7 1.6903 0.7989 6.0742 16 14 -0.4317 0.2779 7.7763 17 1 -0.3554 -0.8575 8.7304 18 1 -0.0255 1.5298 8.4641 19 1 -1.8246 0.4146 7.2799 20 6 2.1455 -4.2498 2.2198 21 6 3.6154 -4.6654 2.4716 22 6 4.1176 -3.5338 3.4043 23 8 3.4583 -2.3565 2.8906 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 3.1301 1.4425 -0.0005 28 1 1.6768 1.9563 -0.8901 29 1 1.6767 1.9564 0.8899 30 1 1.6767 -1.7490 -1.2490 31 1 1.6767 -0.2076 -2.1391 32 1 3.1300 -0.7210 -1.2493 33 1 2.0945 -0.7795 4.2895 34 1 2.2851 0.6335 5.3262 35 1 1.4757 -4.7953 2.8844 36 1 1.8738 -4.4209 1.1781 37 1 3.6660 -5.6327 2.9715 38 1 4.1804 -4.6808 1.5397 39 1 3.8164 -3.7236 4.4345 40 1 5.2005 -3.4315 3.3349 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900464030.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:29 Heat of formation + Delta-G solvation = -190.295676 kcal Electronic energy + Delta-G solvation = -24611.574143 eV Core-core repulsion = 21004.791858 eV Total energy + Delta-G solvation = -3606.782284 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.57769 -41.03268 -39.31958 -38.20387 -36.59771 -35.19984 -33.48619 -33.01552 -31.31372 -28.47890 -28.37196 -27.05509 -25.61745 -24.07781 -22.67344 -21.58677 -20.74561 -20.09614 -19.24380 -18.80706 -17.83404 -17.24238 -16.97340 -16.73452 -16.38293 -15.69405 -15.55071 -15.37328 -15.22516 -14.79141 -14.71844 -14.60979 -13.52734 -13.50063 -13.23905 -13.18940 -13.02848 -12.96693 -12.95751 -12.85219 -12.59863 -12.44932 -12.34316 -12.03459 -12.01532 -11.92308 -11.64680 -11.57165 -11.50295 -11.26816 -10.36373 -10.25519 -9.05606 -6.20191 0.67105 1.19576 1.51447 1.53743 1.81187 1.87851 2.31833 2.40120 2.73015 3.05322 3.37887 3.42104 3.63756 3.70537 3.73954 3.86217 3.91939 3.99430 4.20607 4.45831 4.52421 4.53989 4.66580 4.67472 4.72077 4.76740 4.77921 4.80103 4.86336 4.99546 5.01497 5.16094 5.19238 5.30348 5.39878 5.50002 5.81076 6.36144 6.49842 6.54048 7.23830 7.64557 8.39137 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.014194 B = 0.007042 C = 0.005524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.207884 B = 3975.389033 C = 5067.831729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.095 3.905 3 C -0.135 4.135 4 C -0.172 4.172 5 O -0.346 6.346 6 C 0.489 3.511 7 O -0.500 6.500 8 C 0.109 3.891 9 C 0.419 3.581 10 O -0.612 6.612 11 N -0.546 5.546 12 C -0.419 4.419 13 H 0.081 0.919 14 C -0.033 4.033 15 N -0.896 5.896 16 Si 1.136 2.864 17 H -0.267 1.267 18 H -0.268 1.268 19 H -0.271 1.271 20 C -0.132 4.132 21 C -0.136 4.136 22 C 0.031 3.969 23 O -0.360 6.360 24 H 0.044 0.956 25 H 0.106 0.894 26 H 0.056 0.944 27 H 0.074 0.926 28 H 0.111 0.889 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.101 0.899 32 H 0.070 0.930 33 H 0.388 0.612 34 H 0.260 0.740 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.112 0.888 38 H 0.105 0.895 39 H 0.051 0.949 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.306 -2.338 -11.940 13.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.060 3.940 3 C -0.192 4.192 4 C -0.229 4.229 5 O -0.262 6.262 6 C 0.331 3.669 7 O -0.388 6.388 8 C 0.064 3.936 9 C 0.205 3.795 10 O -0.500 6.500 11 N -0.182 5.182 12 C -0.547 4.547 13 H 0.099 0.901 14 C -0.233 4.233 15 N -0.533 5.533 16 Si 0.954 3.046 17 H -0.192 1.192 18 H -0.192 1.192 19 H -0.197 1.197 20 C -0.170 4.170 21 C -0.173 4.173 22 C -0.044 4.044 23 O -0.279 6.279 24 H 0.063 0.937 25 H 0.125 0.875 26 H 0.075 0.925 27 H 0.093 0.907 28 H 0.130 0.870 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.120 0.880 32 H 0.089 0.911 33 H 0.223 0.777 34 H 0.071 0.929 35 H 0.104 0.896 36 H 0.118 0.882 37 H 0.131 0.869 38 H 0.123 0.877 39 H 0.070 0.930 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.296 -1.659 -10.833 12.172 hybrid contribution 0.302 -0.948 -1.218 1.573 sum 5.599 -2.606 -12.052 13.542 Atomic orbital electron populations 1.22482 0.94543 1.03278 1.03565 1.22744 0.94442 0.93965 0.82806 1.21879 1.02682 0.90633 1.03981 1.22413 1.02134 1.01824 0.96566 1.86650 1.68852 1.24091 1.46611 1.22846 0.77239 0.81386 0.85448 1.90532 1.35387 1.70722 1.42203 1.22032 0.85209 0.96950 0.89422 1.20147 0.88496 0.84098 0.86764 1.90503 1.36470 1.49051 1.73969 1.41944 1.28540 1.21479 1.26205 1.20702 1.13058 1.12462 1.08526 0.90116 1.28086 1.00413 0.90819 1.04029 1.70935 1.16212 1.36805 1.29386 0.82646 0.73075 0.77374 0.71545 1.19201 1.19230 1.19676 1.22929 1.00581 0.88728 1.04774 1.23205 0.92432 1.00099 1.01600 1.24028 0.99891 0.83418 0.97099 1.88965 1.20887 1.34923 1.83143 0.93718 0.87522 0.92459 0.90686 0.87023 0.92812 0.92028 0.88020 0.91099 0.77733 0.92923 0.89598 0.88173 0.86947 0.87668 0.93020 0.84389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.57 8.37 71.98 0.60 -4.97 16 2 C 0.10 2.84 1.13 -10.79 -0.01 2.82 16 3 C -0.13 -3.16 8.85 71.98 0.64 -2.52 16 4 C -0.17 -4.19 8.37 71.98 0.60 -3.59 16 5 O -0.35 -13.34 9.69 -46.86 -0.45 -13.80 16 6 C 0.49 20.07 6.14 71.24 0.44 20.50 16 7 O -0.50 -20.49 11.10 21.95 0.24 -20.25 16 8 C 0.11 4.53 1.04 -11.91 -0.01 4.52 16 9 C 0.42 21.94 6.61 87.66 0.58 22.52 16 10 O -0.61 -35.88 15.13 -3.07 -0.05 -35.93 16 11 N -0.55 -30.03 5.20 -306.98 -1.60 -31.62 16 12 C -0.42 -24.57 9.68 84.04 0.81 -23.76 16 13 H 0.08 5.00 7.16 -2.91 -0.02 4.98 16 14 C -0.03 -1.81 5.50 84.93 0.47 -1.35 16 15 N -0.90 -50.79 13.68 21.66 0.30 -50.49 16 16 Si 1.14 48.12 29.92 68.60 2.05 50.17 16 17 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 18 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 19 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 20 C -0.13 -4.57 6.00 31.58 0.19 -4.38 16 21 C -0.14 -3.29 7.15 31.90 0.23 -3.06 16 22 C 0.03 0.88 7.66 72.67 0.56 1.44 16 23 O -0.36 -13.55 10.09 -137.27 -1.39 -14.94 16 24 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 26 H 0.06 2.05 5.89 -2.39 -0.01 2.03 16 27 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.06 1.77 5.89 -2.39 -0.01 1.76 16 31 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.39 20.71 6.25 -92.71 -0.58 20.13 16 34 H 0.26 14.71 6.77 -92.72 -0.63 14.08 16 35 H 0.09 3.34 6.72 -2.39 -0.02 3.32 16 36 H 0.10 3.29 6.79 -2.39 -0.02 3.27 16 37 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.14 2.83 8.14 -2.39 -0.02 2.81 16 Total: -1.00 -73.72 327.68 4.82 -68.90 By element: Atomic # 1 Polarization: 39.16 SS G_CDS: 0.62 Total: 39.78 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: 5.09 Total: 8.17 kcal Atomic # 7 Polarization: -80.82 SS G_CDS: -1.30 Total: -82.12 kcal Atomic # 8 Polarization: -83.27 SS G_CDS: -1.64 Total: -84.91 kcal Atomic # 14 Polarization: 48.12 SS G_CDS: 2.05 Total: 50.17 kcal Total: -73.72 4.82 -68.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900464030.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.395 kcal (2) G-P(sol) polarization free energy of solvation -73.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds