Wall clock time and date at job start Tue Mar 31 2020 05:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00012 * 2 1 4 4 H 1.48504 * 109.46878 * 270.00182 * 3 2 1 5 5 H 1.48497 * 109.47032 * 29.99749 * 3 2 1 6 6 H 1.48499 * 109.47345 * 150.00398 * 3 2 1 7 7 C 1.37872 * 120.00034 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99874 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00238 * 180.02562 * 7 2 1 10 10 N 1.46496 * 109.47541 * 179.97438 * 9 7 2 11 11 C 1.36397 * 124.88290 * 264.99787 * 10 9 7 12 12 C 1.35980 * 109.69754 * 179.97438 * 11 10 9 13 13 C 1.47255 * 126.70354 * 180.02562 * 12 11 10 14 14 N 1.29848 * 120.00056 * 179.97438 * 13 12 11 15 15 N 1.40102 * 120.00307 * 180.02562 * 14 13 12 16 16 C 1.37500 * 120.00311 * 180.02562 * 15 14 13 17 17 N 1.30414 * 119.99978 * 0.02562 * 16 15 14 18 18 N 1.37584 * 119.99857 * 180.02562 * 16 15 14 19 19 C 1.47353 * 106.59426 * 359.74653 * 12 11 10 20 20 C 1.39342 * 133.94881 * 179.52191 * 19 12 11 21 21 C 1.36728 * 119.78975 * 180.44789 * 20 19 12 22 22 C 1.38776 * 120.46341 * 0.26429 * 21 20 19 23 23 C 1.37757 * 120.63731 * 359.97438 * 22 21 20 24 24 C 1.37835 * 124.87978 * 84.99577 * 10 9 7 25 25 H 0.97006 * 119.99618 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47274 * 59.99597 * 9 7 2 27 27 H 1.09003 * 109.46575 * 299.99780 * 9 7 2 28 28 H 1.08000 * 125.15015 * 0.02562 * 11 10 9 29 29 H 1.08001 * 119.99936 * 359.97438 * 13 12 11 30 30 H 0.97002 * 119.99302 * 0.02562 * 15 14 13 31 31 H 0.96997 * 120.00178 * 179.97438 * 17 16 15 32 32 H 0.96994 * 120.00440 * 359.97438 * 18 16 15 33 33 H 0.96997 * 119.99657 * 180.02562 * 18 16 15 34 34 H 1.08002 * 120.10928 * 0.73259 * 20 19 12 35 35 H 1.08002 * 119.76425 * 180.27596 * 21 20 19 36 36 H 1.08004 * 119.67753 * 180.02562 * 22 21 20 37 37 H 1.08002 * 120.10888 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9999 -2.5752 -0.0001 11 6 4.3515 -3.2784 1.1145 12 6 4.7593 -4.5261 0.7596 13 6 5.2192 -5.5925 1.6650 14 7 5.5804 -6.7427 1.1828 15 7 6.0174 -7.7575 2.0442 16 6 6.4004 -8.9754 1.5334 17 7 6.3571 -9.1857 0.2471 18 7 6.8291 -9.9720 2.3795 19 6 4.6446 -4.6049 -0.7073 20 6 4.9144 -5.5984 -1.6464 21 6 4.7049 -5.3522 -2.9749 22 6 4.2305 -4.1178 -3.3955 23 6 3.9623 -3.1209 -2.4833 24 6 4.1701 -3.3510 -1.1266 25 1 -0.4850 0.8401 0.0004 26 1 3.8746 -0.6808 0.8905 27 1 3.8751 -0.6796 -0.8895 28 1 4.3112 -2.9015 2.1259 29 1 5.2562 -5.4178 2.7302 30 1 6.0499 -7.6008 3.0009 31 1 6.6276 -10.0447 -0.1133 32 1 6.8616 -9.8155 3.3362 33 1 7.0995 -10.8310 2.0191 34 1 5.2835 -6.5614 -1.3256 35 1 4.9099 -6.1241 -3.7020 36 1 4.0691 -3.9372 -4.4480 37 1 3.5930 -2.1635 -2.8200 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000915051083.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:43 Heat of formation + Delta-G solvation = 136.875428 kcal Electronic energy + Delta-G solvation = -21011.111201 eV Core-core repulsion = 17790.410542 eV Total energy + Delta-G solvation = -3220.700659 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.63534 -38.31934 -36.45597 -35.79931 -33.49210 -32.24023 -30.97441 -30.28935 -29.72194 -28.38723 -27.07479 -23.45203 -22.50124 -21.72662 -20.96599 -20.16626 -19.07807 -17.73713 -17.40079 -17.16134 -16.18264 -15.96734 -15.40645 -14.92194 -14.66555 -14.52698 -14.12756 -13.73104 -13.38463 -13.20723 -12.76558 -12.52756 -12.05058 -11.91075 -11.84792 -11.42988 -11.06747 -10.89726 -10.73508 -10.33149 -10.17558 -9.75384 -9.65979 -9.33730 -9.28047 -8.84137 -8.70313 -8.02984 -7.51748 -6.71354 -6.31281 -4.35776 1.54333 2.09520 2.39471 2.45026 3.10783 3.14878 3.16863 3.19564 3.64191 3.77990 4.04454 4.16489 4.64076 4.93900 4.96558 5.00831 5.39903 5.44169 5.68285 5.76121 5.91422 6.03769 6.20667 6.27293 6.38634 6.42748 6.43916 6.51943 6.61628 6.77080 6.85682 7.12643 7.23462 7.30010 7.38486 7.52680 7.80224 7.90057 7.96060 8.24985 8.27874 8.74871 8.93515 9.24052 10.80955 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.022817 B = 0.003833 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.845019 B = 7303.518163 C = 8139.862883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.080 3.920 3 Si 0.873 3.127 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.547 4.547 8 H 0.083 0.917 9 C 0.206 3.794 10 N -0.439 5.439 11 C 0.117 3.883 12 C -0.178 4.178 13 C 0.148 3.852 14 N -0.215 5.215 15 N -0.578 5.578 16 C 0.646 3.354 17 N -0.784 5.784 18 N -0.901 5.901 19 C -0.080 4.080 20 C -0.066 4.066 21 C -0.156 4.156 22 C -0.115 4.115 23 C -0.114 4.114 24 C 0.099 3.901 25 H 0.269 0.731 26 H 0.047 0.953 27 H 0.039 0.961 28 H 0.169 0.831 29 H 0.108 0.892 30 H 0.380 0.620 31 H 0.332 0.668 32 H 0.386 0.614 33 H 0.409 0.591 34 H 0.134 0.866 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.064 -12.200 5.114 18.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.125 4.125 3 Si 0.699 3.301 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.585 4.585 8 H 0.101 0.899 9 C 0.086 3.914 10 N -0.115 5.115 11 C -0.021 4.021 12 C -0.189 4.189 13 C -0.063 4.063 14 N -0.021 5.021 15 N -0.309 5.309 16 C 0.276 3.724 17 N -0.428 5.428 18 N -0.461 5.461 19 C -0.085 4.085 20 C -0.085 4.085 21 C -0.175 4.175 22 C -0.135 4.135 23 C -0.134 4.134 24 C -0.008 4.008 25 H 0.079 0.921 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.186 0.814 29 H 0.125 0.875 30 H 0.219 0.781 31 H 0.148 0.852 32 H 0.213 0.787 33 H 0.240 0.760 34 H 0.152 0.848 35 H 0.131 0.869 36 H 0.134 0.866 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 12.593 -11.685 3.396 17.511 hybrid contribution 0.568 0.234 2.120 2.207 sum 13.161 -11.452 5.515 18.297 Atomic orbital electron populations 1.69881 1.06212 1.27439 1.48568 1.24838 0.94800 0.98871 0.93991 0.86904 0.80294 0.83781 0.79110 1.19649 1.20585 1.18896 1.21222 0.88111 0.95588 1.53562 0.89917 1.20114 0.96827 0.75752 0.98661 1.44305 1.50048 1.13344 1.03795 1.21863 0.97405 0.90859 0.91964 1.17980 1.16769 0.93135 0.91004 1.23470 0.95888 0.90530 0.96365 1.75162 1.11705 0.97014 1.18205 1.44457 1.70693 1.09737 1.06053 1.18147 0.87478 0.80706 0.86033 1.69964 1.37492 1.28967 1.06406 1.43374 1.77331 1.15753 1.09629 1.18901 1.04033 0.93474 0.92096 1.20443 0.97853 0.98627 0.91566 1.20564 1.04115 0.97109 0.95693 1.20694 1.01004 0.93367 0.98392 1.20108 1.03325 1.00283 0.89675 1.18265 1.02706 0.91018 0.88782 0.92085 0.93552 0.94259 0.81376 0.87469 0.78141 0.85208 0.78652 0.75996 0.84774 0.86935 0.86629 0.86228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.66 13.96 55.43 0.77 -24.88 16 2 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.87 19.47 27.47 -169.99 -4.67 14.80 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 6 H -0.26 -5.50 6.54 56.52 0.37 -5.13 16 7 C -0.55 -14.54 9.94 -34.44 -0.34 -14.88 16 8 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 9 C 0.21 4.55 4.79 -5.20 -0.02 4.52 16 10 N -0.44 -9.05 2.75 -115.35 -0.32 -9.37 16 11 C 0.12 2.04 11.25 -16.33 -0.18 1.85 16 12 C -0.18 -3.11 6.27 -103.34 -0.65 -3.76 16 13 C 0.15 2.15 10.99 -14.73 -0.16 1.98 16 14 N -0.22 -3.37 9.83 32.12 0.32 -3.05 16 15 N -0.58 -7.04 6.38 30.17 0.19 -6.84 16 16 C 0.65 7.74 9.09 -319.83 -2.91 4.83 16 17 N -0.78 -11.44 13.63 30.18 0.41 -11.02 16 18 N -0.90 -6.13 9.02 30.17 0.27 -5.86 16 19 C -0.08 -1.58 6.26 -104.93 -0.66 -2.24 16 20 C -0.07 -1.24 9.77 -39.72 -0.39 -1.63 16 21 C -0.16 -2.67 9.98 -39.93 -0.40 -3.06 16 22 C -0.12 -1.98 10.01 -39.56 -0.40 -2.38 16 23 C -0.11 -2.23 9.98 -39.41 -0.39 -2.62 16 24 C 0.10 2.06 6.80 -83.98 -0.57 1.48 16 25 H 0.27 7.25 8.31 -40.82 -0.34 6.92 16 26 H 0.05 0.96 7.17 -51.93 -0.37 0.59 16 27 H 0.04 0.85 7.57 -51.93 -0.39 0.46 16 28 H 0.17 2.30 8.06 -52.49 -0.42 1.88 16 29 H 0.11 1.12 8.02 -52.49 -0.42 0.70 16 30 H 0.38 3.25 8.75 -182.59 -1.60 1.65 16 31 H 0.33 4.06 8.80 -40.82 -0.36 3.70 16 32 H 0.39 1.70 8.93 -40.82 -0.36 1.33 16 33 H 0.41 2.08 8.83 -40.82 -0.36 1.72 16 34 H 0.13 2.56 7.24 -52.49 -0.38 2.18 16 35 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 36 H 0.12 1.66 8.06 -52.48 -0.42 1.23 16 37 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 LS Contribution 328.30 15.07 4.95 4.95 Total: -1.00 -33.41 328.30 -10.77 -44.18 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -5.53 Total: 10.96 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: -7.17 Total: -13.86 kcal Atomic # 7 Polarization: -62.67 SS G_CDS: 1.65 Total: -61.02 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -4.67 Total: 14.80 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.41 -10.77 -44.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915051083.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.056 kcal (2) G-P(sol) polarization free energy of solvation -33.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds