Wall clock time and date at job start Tue Mar 31 2020 05:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00012 * 2 1 4 4 H 1.48504 * 109.46878 * 270.00182 * 3 2 1 5 5 H 1.48497 * 109.47032 * 29.99749 * 3 2 1 6 6 H 1.48499 * 109.47345 * 150.00398 * 3 2 1 7 7 C 1.37872 * 120.00034 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99874 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00238 * 180.02562 * 7 2 1 10 10 N 1.46496 * 109.47541 * 179.97438 * 9 7 2 11 11 C 1.36397 * 124.88290 * 264.99787 * 10 9 7 12 12 C 1.35980 * 109.69754 * 179.97438 * 11 10 9 13 13 C 1.47255 * 126.70354 * 180.02562 * 12 11 10 14 14 N 1.29848 * 120.00056 * 179.97438 * 13 12 11 15 15 N 1.40102 * 120.00307 * 180.02562 * 14 13 12 16 16 C 1.37500 * 120.00311 * 180.02562 * 15 14 13 17 17 N 1.30414 * 119.99978 * 0.02562 * 16 15 14 18 18 N 1.37584 * 119.99857 * 180.02562 * 16 15 14 19 19 C 1.47353 * 106.59426 * 359.74653 * 12 11 10 20 20 C 1.39342 * 133.94881 * 179.52191 * 19 12 11 21 21 C 1.36728 * 119.78975 * 180.44789 * 20 19 12 22 22 C 1.38776 * 120.46341 * 0.26429 * 21 20 19 23 23 C 1.37757 * 120.63731 * 359.97438 * 22 21 20 24 24 C 1.37835 * 124.87978 * 84.99577 * 10 9 7 25 25 H 0.97006 * 119.99618 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47274 * 59.99597 * 9 7 2 27 27 H 1.09003 * 109.46575 * 299.99780 * 9 7 2 28 28 H 1.08000 * 125.15015 * 0.02562 * 11 10 9 29 29 H 1.08001 * 119.99936 * 359.97438 * 13 12 11 30 30 H 0.97002 * 119.99302 * 0.02562 * 15 14 13 31 31 H 0.96997 * 120.00178 * 179.97438 * 17 16 15 32 32 H 0.96994 * 120.00440 * 359.97438 * 18 16 15 33 33 H 0.96997 * 119.99657 * 180.02562 * 18 16 15 34 34 H 1.08002 * 120.10928 * 0.73259 * 20 19 12 35 35 H 1.08002 * 119.76425 * 180.27596 * 21 20 19 36 36 H 1.08004 * 119.67753 * 180.02562 * 22 21 20 37 37 H 1.08002 * 120.10888 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9999 -2.5752 -0.0001 11 6 4.3515 -3.2784 1.1145 12 6 4.7593 -4.5261 0.7596 13 6 5.2192 -5.5925 1.6650 14 7 5.5804 -6.7427 1.1828 15 7 6.0174 -7.7575 2.0442 16 6 6.4004 -8.9754 1.5334 17 7 6.3571 -9.1857 0.2471 18 7 6.8291 -9.9720 2.3795 19 6 4.6446 -4.6049 -0.7073 20 6 4.9144 -5.5984 -1.6464 21 6 4.7049 -5.3522 -2.9749 22 6 4.2305 -4.1178 -3.3955 23 6 3.9623 -3.1209 -2.4833 24 6 4.1701 -3.3510 -1.1266 25 1 -0.4850 0.8401 0.0004 26 1 3.8746 -0.6808 0.8905 27 1 3.8751 -0.6796 -0.8895 28 1 4.3112 -2.9015 2.1259 29 1 5.2562 -5.4178 2.7302 30 1 6.0499 -7.6008 3.0009 31 1 6.6276 -10.0447 -0.1133 32 1 6.8616 -9.8155 3.3362 33 1 7.0995 -10.8310 2.0191 34 1 5.2835 -6.5614 -1.3256 35 1 4.9099 -6.1241 -3.7020 36 1 4.0691 -3.9372 -4.4480 37 1 3.5930 -2.1635 -2.8200 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000915051083.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:42 Heat of formation + Delta-G solvation = 115.951620 kcal Electronic energy + Delta-G solvation = -21012.018526 eV Core-core repulsion = 17790.410542 eV Total energy + Delta-G solvation = -3221.607983 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.06027 -39.25365 -37.88788 -36.84286 -35.27489 -33.76157 -31.89474 -31.55396 -31.20485 -29.79381 -28.67547 -25.03051 -23.87207 -23.18333 -22.10101 -21.45024 -20.37867 -19.17874 -18.76001 -18.21641 -17.52384 -17.22621 -16.55033 -16.35631 -16.09461 -15.72779 -15.39816 -15.00716 -14.86367 -14.79537 -14.38520 -14.01999 -13.63676 -13.35572 -13.13250 -12.86541 -12.59353 -12.45217 -12.30848 -11.82860 -11.72469 -11.61234 -10.87855 -10.78019 -10.60654 -10.22894 -9.78675 -9.11109 -8.95092 -8.37537 -8.06972 -6.48141 0.22563 0.74084 1.07775 1.37382 1.38619 1.47187 1.49293 2.10699 2.23330 2.28752 2.54327 2.95902 3.19978 3.38132 3.85905 3.89240 3.97941 4.23788 4.37432 4.42671 4.48833 4.65841 4.73723 4.90103 4.92637 5.03425 5.10485 5.28699 5.31099 5.51998 5.72651 5.80839 5.88590 5.98147 6.04557 6.11002 6.14877 6.50093 6.53713 6.63292 7.14185 7.17156 7.27176 8.05860 8.79260 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.022817 B = 0.003833 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.845019 B = 7303.518163 C = 8139.862883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.020 3.980 3 Si 0.949 3.051 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.233 1.233 7 C -0.550 4.550 8 H 0.027 0.973 9 C 0.216 3.784 10 N -0.458 5.458 11 C 0.109 3.891 12 C -0.179 4.179 13 C 0.147 3.853 14 N -0.247 5.247 15 N -0.571 5.571 16 C 0.643 3.357 17 N -0.833 5.833 18 N -0.878 5.878 19 C -0.103 4.103 20 C -0.075 4.075 21 C -0.154 4.154 22 C -0.108 4.108 23 C -0.140 4.140 24 C 0.069 3.931 25 H 0.272 0.728 26 H 0.071 0.929 27 H 0.044 0.956 28 H 0.205 0.795 29 H 0.152 0.848 30 H 0.400 0.600 31 H 0.339 0.661 32 H 0.403 0.597 33 H 0.419 0.581 34 H 0.129 0.871 35 H 0.141 0.859 36 H 0.146 0.854 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.284 -12.316 6.342 20.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.180 4.180 3 Si 0.771 3.229 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.155 1.155 7 C -0.588 4.588 8 H 0.045 0.955 9 C 0.096 3.904 10 N -0.136 5.136 11 C -0.026 4.026 12 C -0.189 4.189 13 C -0.064 4.064 14 N -0.053 5.053 15 N -0.305 5.305 16 C 0.273 3.727 17 N -0.480 5.480 18 N -0.439 5.439 19 C -0.107 4.107 20 C -0.094 4.094 21 C -0.173 4.173 22 C -0.127 4.127 23 C -0.160 4.160 24 C -0.037 4.037 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.062 0.938 28 H 0.222 0.778 29 H 0.168 0.832 30 H 0.241 0.759 31 H 0.155 0.845 32 H 0.232 0.768 33 H 0.253 0.747 34 H 0.147 0.853 35 H 0.159 0.841 36 H 0.164 0.836 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 14.855 -11.864 4.682 19.579 hybrid contribution -0.131 0.022 1.739 1.744 sum 14.723 -11.842 6.420 19.956 Atomic orbital electron populations 1.70052 1.08534 1.28746 1.50507 1.25843 0.95582 1.03319 0.93210 0.85702 0.79890 0.77756 0.79586 1.19141 1.20540 1.15538 1.21356 0.90737 0.93523 1.53198 0.95503 1.19877 0.93485 0.77335 0.99745 1.44266 1.51497 1.13099 1.04736 1.22474 0.96716 0.90717 0.92660 1.18337 1.16022 0.94067 0.90499 1.23523 0.95602 0.89501 0.97787 1.75011 1.11530 0.98003 1.20722 1.44307 1.70301 1.09139 1.06763 1.18227 0.86854 0.81209 0.86395 1.69913 1.39578 1.30131 1.08359 1.43094 1.75874 1.14932 1.10021 1.19293 1.04396 0.93315 0.93744 1.20532 0.98288 0.98251 0.92313 1.20909 1.02971 0.97716 0.95732 1.21032 0.99481 0.92660 0.99556 1.20311 1.04736 1.00897 0.90092 1.18629 1.03748 0.91868 0.89405 0.91929 0.91108 0.93769 0.77792 0.83157 0.75857 0.84487 0.76770 0.74733 0.85307 0.84093 0.83584 0.86969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.34 13.96 21.45 0.30 -56.04 16 2 C 0.02 1.09 5.47 84.65 0.46 1.55 16 3 Si 0.95 39.64 27.47 68.60 1.88 41.52 16 4 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 5 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 6 H -0.23 -8.47 6.54 99.48 0.65 -7.82 16 7 C -0.55 -30.08 9.94 25.60 0.25 -29.82 16 8 H 0.03 1.72 8.06 -2.91 -0.02 1.69 16 9 C 0.22 9.42 4.79 85.63 0.41 9.83 16 10 N -0.46 -18.94 2.75 -518.86 -1.43 -20.37 16 11 C 0.11 3.71 11.25 83.46 0.94 4.65 16 12 C -0.18 -6.14 6.27 -19.03 -0.12 -6.26 16 13 C 0.15 3.98 10.99 87.36 0.96 4.94 16 14 N -0.25 -7.39 9.83 -52.29 -0.51 -7.91 16 15 N -0.57 -12.72 6.38 -58.45 -0.37 -13.09 16 16 C 0.64 14.31 9.09 260.45 2.37 16.68 16 17 N -0.83 -23.72 13.63 -58.42 -0.80 -24.52 16 18 N -0.88 -9.75 9.02 -58.45 -0.53 -10.28 16 19 C -0.10 -4.09 6.26 -20.07 -0.13 -4.21 16 20 C -0.08 -2.83 9.77 22.18 0.22 -2.61 16 21 C -0.15 -5.16 9.98 22.04 0.22 -4.94 16 22 C -0.11 -3.67 10.01 22.28 0.22 -3.44 16 23 C -0.14 -5.60 9.98 22.38 0.22 -5.38 16 24 C 0.07 2.95 6.80 38.97 0.26 3.21 16 25 H 0.27 15.07 8.31 -92.70 -0.77 14.30 16 26 H 0.07 2.75 7.17 -2.39 -0.02 2.73 16 27 H 0.04 1.88 7.57 -2.39 -0.02 1.86 16 28 H 0.21 5.08 8.06 -2.91 -0.02 5.06 16 29 H 0.15 2.61 8.02 -2.91 -0.02 2.59 16 30 H 0.40 5.65 8.75 -213.32 -1.87 3.79 16 31 H 0.34 8.14 8.80 -92.71 -0.82 7.32 16 32 H 0.40 2.27 8.93 -92.71 -0.83 1.44 16 33 H 0.42 3.27 8.83 -92.71 -0.82 2.45 16 34 H 0.13 4.96 7.24 -2.91 -0.02 4.93 16 35 H 0.14 3.83 8.06 -2.91 -0.02 3.81 16 36 H 0.15 3.94 8.06 -2.91 -0.02 3.91 16 37 H 0.11 4.50 8.06 -2.91 -0.02 4.48 16 Total: -1.00 -76.63 328.30 1.61 -75.02 By element: Atomic # 1 Polarization: 34.72 SS G_CDS: -3.23 Total: 31.49 kcal Atomic # 6 Polarization: -22.12 SS G_CDS: 6.30 Total: -15.82 kcal Atomic # 7 Polarization: -128.87 SS G_CDS: -3.34 Total: -132.21 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 1.88 Total: 41.52 kcal Total: -76.63 1.61 -75.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915051083.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.968 kcal (2) G-P(sol) polarization free energy of solvation -76.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds