Wall clock time and date at job start Tue Mar 31 2020 05:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30847 * 125.89417 * 2 1 4 4 N 1.40082 * 108.22305 * 179.76362 * 3 2 1 5 5 C 1.46504 * 126.03787 * 180.30315 * 4 3 2 6 6 C 1.35047 * 107.92873 * 0.42587 * 4 3 2 7 7 C 1.50697 * 126.13678 * 179.84498 * 6 4 3 8 8 N 1.46905 * 109.47066 * 89.71537 * 7 6 4 9 9 C 1.46901 * 110.99870 * 180.02562 * 8 7 6 10 10 C 1.53004 * 109.46916 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.46923 * 299.99733 * 10 9 8 12 12 C 1.52999 * 109.46998 * 59.99872 * 10 9 8 13 13 C 1.50703 * 109.46807 * 179.97438 * 10 9 8 14 14 H 1.07995 * 120.00107 * 359.97438 * 13 10 9 15 15 C 1.37878 * 119.99714 * 179.97438 * 13 10 9 16 16 N 1.31510 * 119.99944 * 0.02562 * 15 13 10 17 17 Si 1.86799 * 119.99765 * 179.97438 * 15 13 10 18 18 H 1.48499 * 109.47110 * 90.00207 * 17 15 13 19 19 H 1.48501 * 109.47137 * 210.00199 * 17 15 13 20 20 H 1.48496 * 109.47323 * 330.00240 * 17 15 13 21 21 C 1.35373 * 107.72289 * 359.58359 * 6 4 3 22 22 Cl 1.73600 * 126.04394 * 180.30239 * 21 6 4 23 23 H 1.08995 * 109.47132 * 269.97495 * 1 2 3 24 24 H 1.09000 * 109.46699 * 29.97598 * 1 2 3 25 25 H 1.09003 * 109.47181 * 149.97162 * 1 2 3 26 26 H 1.08996 * 109.47355 * 270.14020 * 5 4 3 27 27 H 1.08994 * 109.47068 * 30.14253 * 5 4 3 28 28 H 1.08994 * 109.46920 * 150.13930 * 5 4 3 29 29 H 1.09001 * 109.47558 * 329.71701 * 7 6 4 30 30 H 1.08998 * 109.47216 * 209.71363 * 7 6 4 31 31 H 1.00901 * 110.99869 * 56.04737 * 8 7 6 32 32 H 1.09004 * 109.47031 * 299.99620 * 9 8 7 33 33 H 1.08995 * 109.47111 * 59.99900 * 9 8 7 34 34 H 1.09002 * 109.47301 * 60.00027 * 11 10 9 35 35 H 1.09001 * 109.47017 * 180.02562 * 11 10 9 36 36 H 1.09005 * 109.47249 * 300.00302 * 11 10 9 37 37 H 1.09001 * 109.46999 * 60.00126 * 12 10 9 38 38 H 1.09001 * 109.46478 * 179.97438 * 12 10 9 39 39 H 1.08993 * 109.47197 * 299.99817 * 12 10 9 40 40 H 0.97007 * 120.00038 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0600 0.0000 4 7 3.6089 0.6348 0.0055 5 6 4.7897 1.5019 0.0136 6 6 3.6150 -0.7157 -0.0008 7 6 4.8360 -1.5988 -0.0013 8 7 5.2328 -1.8867 1.3835 9 6 6.4231 -2.7468 1.4221 10 6 6.8046 -3.0245 2.8776 11 6 7.1073 -1.7029 3.5864 12 6 5.6438 -3.7279 3.5838 13 6 8.0253 -3.9074 2.9172 14 1 8.4828 -4.2378 1.9964 15 6 8.5578 -4.2934 4.1289 16 7 8.0003 -3.8915 5.2501 17 14 10.0704 -5.3884 4.1780 18 1 11.2922 -4.5444 4.1915 19 1 10.0347 -6.2273 5.4029 20 1 10.0869 -6.2639 2.9788 21 6 2.3274 -1.1336 -0.0006 22 17 1.7892 -2.7840 0.0001 23 1 -0.3633 -0.0004 1.0276 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3634 -0.8897 -0.5143 26 1 5.0862 1.7217 -1.0120 27 1 4.5540 2.4319 0.5309 28 1 5.6075 0.9973 0.5280 29 1 5.6521 -1.0904 -0.5148 30 1 4.6089 -2.5326 -0.5157 31 1 4.4706 -2.3001 1.8995 32 1 6.2073 -3.6886 0.9175 33 1 7.2498 -2.2459 0.9186 34 1 6.2241 -1.0646 3.5578 35 1 7.3795 -1.9007 4.6232 36 1 7.9342 -1.2017 3.0833 37 1 5.4282 -4.6695 3.0787 38 1 5.9159 -3.9261 4.6205 39 1 4.7608 -3.0897 3.5551 40 1 8.3748 -4.1633 6.1027 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922179650.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:23 Heat of formation + Delta-G solvation = 60.407546 kcal Electronic energy + Delta-G solvation = -20722.247092 eV Core-core repulsion = 17599.338031 eV Total energy + Delta-G solvation = -3122.909061 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.130 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.39476 -37.06229 -36.35856 -34.57444 -33.56204 -31.40745 -30.03853 -29.32351 -25.89294 -25.58769 -25.35683 -25.18952 -23.07407 -20.46998 -19.70799 -18.48854 -16.90296 -15.99997 -15.74348 -15.30383 -14.82520 -14.27876 -14.19821 -13.88810 -13.69332 -13.43917 -12.89733 -12.59480 -12.56572 -12.38586 -12.32469 -12.09796 -11.65277 -11.54759 -11.30298 -11.11898 -11.03296 -10.66594 -10.62475 -10.43116 -10.21159 -10.09607 -9.42866 -9.30420 -9.10029 -8.66378 -8.34054 -8.30918 -7.87640 -5.93541 -4.04288 1.67379 2.01270 2.48877 2.81493 3.29755 3.37083 3.39596 4.37034 4.46042 4.47309 4.83282 4.91701 5.11380 5.15426 5.30557 5.32159 5.44339 5.49944 5.57429 5.63516 5.73446 5.96040 6.22778 6.31684 6.37872 6.66837 6.81250 6.85976 7.03198 7.13563 7.31537 7.38746 7.56118 7.60413 7.72825 7.78579 7.82181 8.17284 8.30571 8.52049 8.96915 9.60967 11.06963 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.026592 B = 0.003964 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.679248 B = 7061.733257 C = 7533.760665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.088 3.912 3 N -0.290 5.290 4 N -0.353 5.353 5 C 0.101 3.899 6 C 0.124 3.876 7 C 0.112 3.888 8 N -0.680 5.680 9 C 0.075 3.925 10 C 0.070 3.930 11 C -0.118 4.118 12 C -0.133 4.133 13 C -0.508 4.508 14 H 0.052 0.948 15 C 0.066 3.934 16 N -0.884 5.884 17 Si 0.889 3.111 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.190 4.190 22 Cl -0.044 7.044 23 H 0.080 0.920 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.102 0.898 29 H 0.083 0.917 30 H 0.057 0.943 31 H 0.345 0.655 32 H 0.018 0.982 33 H 0.058 0.942 34 H 0.018 0.982 35 H 0.074 0.926 36 H 0.017 0.983 37 H 0.020 0.980 38 H 0.083 0.917 39 H 0.010 0.990 40 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.933 7.435 -10.741 17.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.079 4.079 3 N -0.113 5.113 4 N -0.134 5.134 5 C -0.040 4.040 6 C -0.007 4.007 7 C -0.019 4.019 8 N -0.313 5.313 9 C -0.052 4.052 10 C 0.069 3.931 11 C -0.176 4.176 12 C -0.190 4.190 13 C -0.546 4.546 14 H 0.070 0.930 15 C -0.135 4.135 16 N -0.522 5.522 17 Si 0.717 3.283 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.201 1.201 21 C -0.229 4.229 22 Cl -0.016 7.016 23 H 0.098 0.902 24 H 0.093 0.907 25 H 0.098 0.902 26 H 0.092 0.908 27 H 0.109 0.891 28 H 0.120 0.880 29 H 0.101 0.899 30 H 0.075 0.925 31 H 0.165 0.835 32 H 0.036 0.964 33 H 0.077 0.923 34 H 0.037 0.963 35 H 0.093 0.907 36 H 0.037 0.963 37 H 0.039 0.961 38 H 0.102 0.898 39 H 0.029 0.971 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.404 9.237 -10.473 17.414 hybrid contribution 0.545 -2.441 -0.221 2.511 sum -9.859 6.796 -10.694 16.055 Atomic orbital electron populations 1.20203 0.86180 1.03417 1.03357 1.22179 0.97183 0.88962 0.99550 1.77380 0.86319 1.21739 1.25858 1.48117 1.05570 1.03881 1.55840 1.21981 0.83919 0.94797 1.03281 1.20786 0.95789 0.84985 0.99128 1.20561 0.91514 0.96083 0.93704 1.60705 1.09549 1.52003 1.09066 1.22212 0.89786 0.92243 1.01008 1.18094 0.93652 0.93496 0.87861 1.21640 0.97031 0.96022 1.02932 1.21833 0.95767 0.97077 1.04358 1.21083 1.11293 1.30029 0.92230 0.92951 1.24879 0.96875 0.96023 0.95736 1.69833 1.40016 1.45190 0.97198 0.86658 0.83550 0.80699 0.77414 1.20811 1.21322 1.20087 1.20349 0.92183 0.87006 1.23397 1.98313 1.89754 1.15658 1.97848 0.90151 0.90696 0.90213 0.90807 0.89133 0.87991 0.89888 0.92542 0.83507 0.96350 0.92330 0.96262 0.90693 0.96331 0.96088 0.89798 0.97079 0.93158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.72 10.31 36.01 0.37 -0.35 16 2 C 0.09 1.19 7.22 -82.38 -0.59 0.60 16 3 N -0.29 -4.25 12.57 33.69 0.42 -3.83 16 4 N -0.35 -4.88 4.02 -63.85 -0.26 -5.14 16 5 C 0.10 1.04 11.10 59.85 0.66 1.70 16 6 C 0.12 1.78 6.45 -82.20 -0.53 1.25 16 7 C 0.11 1.60 5.52 -4.97 -0.03 1.57 16 8 N -0.68 -11.62 5.70 -115.05 -0.66 -12.28 16 9 C 0.08 1.49 4.59 -3.82 -0.02 1.47 16 10 C 0.07 1.63 0.57 -155.66 -0.09 1.54 16 11 C -0.12 -2.80 8.09 37.16 0.30 -2.50 16 12 C -0.13 -3.10 7.92 37.16 0.29 -2.81 16 13 C -0.51 -13.33 8.01 -34.44 -0.28 -13.61 16 14 H 0.05 1.37 7.74 -52.49 -0.41 0.96 16 15 C 0.07 1.76 5.15 -17.82 -0.09 1.67 16 16 N -0.88 -24.16 9.35 55.43 0.52 -23.64 16 17 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 21 C -0.19 -2.72 6.63 -39.97 -0.27 -2.98 16 22 Cl -0.04 -0.58 28.59 -51.86 -1.48 -2.07 16 23 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.08 0.70 8.01 -51.93 -0.42 0.28 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.10 1.07 7.67 -51.93 -0.40 0.67 16 29 H 0.08 1.07 7.74 -51.93 -0.40 0.66 16 30 H 0.06 0.80 7.91 -51.93 -0.41 0.39 16 31 H 0.35 6.23 6.76 -39.29 -0.27 5.97 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.02 0.41 7.60 -51.93 -0.39 0.02 16 35 H 0.07 1.97 6.07 -51.93 -0.32 1.65 16 36 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 2.19 6.07 -51.93 -0.32 1.87 16 39 H 0.01 0.22 6.57 -51.93 -0.34 -0.12 16 40 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 338.24 15.07 5.10 5.10 Total: -1.00 -28.56 338.24 -7.82 -36.38 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -6.18 Total: 2.14 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -0.26 Total: -12.45 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: 0.03 Total: -44.88 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.48 Total: -2.07 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.56 -7.82 -36.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922179650.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.786 kcal (2) G-P(sol) polarization free energy of solvation -28.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds