Wall clock time and date at job start Tue Mar 31 2020 05:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30847 * 125.89417 * 2 1 4 4 N 1.40082 * 108.22305 * 179.76362 * 3 2 1 5 5 C 1.46504 * 126.03787 * 180.30315 * 4 3 2 6 6 C 1.35047 * 107.92873 * 0.42587 * 4 3 2 7 7 C 1.50697 * 126.13678 * 179.84498 * 6 4 3 8 8 N 1.46905 * 109.47066 * 89.71537 * 7 6 4 9 9 C 1.46901 * 110.99870 * 180.02562 * 8 7 6 10 10 C 1.53004 * 109.46916 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.46923 * 299.99733 * 10 9 8 12 12 C 1.52999 * 109.46998 * 59.99872 * 10 9 8 13 13 C 1.50703 * 109.46807 * 179.97438 * 10 9 8 14 14 H 1.07995 * 120.00107 * 359.97438 * 13 10 9 15 15 C 1.37878 * 119.99714 * 179.97438 * 13 10 9 16 16 N 1.31510 * 119.99944 * 0.02562 * 15 13 10 17 17 Si 1.86799 * 119.99765 * 179.97438 * 15 13 10 18 18 H 1.48499 * 109.47110 * 90.00207 * 17 15 13 19 19 H 1.48501 * 109.47137 * 210.00199 * 17 15 13 20 20 H 1.48496 * 109.47323 * 330.00240 * 17 15 13 21 21 C 1.35373 * 107.72289 * 359.58359 * 6 4 3 22 22 Cl 1.73600 * 126.04394 * 180.30239 * 21 6 4 23 23 H 1.08995 * 109.47132 * 269.97495 * 1 2 3 24 24 H 1.09000 * 109.46699 * 29.97598 * 1 2 3 25 25 H 1.09003 * 109.47181 * 149.97162 * 1 2 3 26 26 H 1.08996 * 109.47355 * 270.14020 * 5 4 3 27 27 H 1.08994 * 109.47068 * 30.14253 * 5 4 3 28 28 H 1.08994 * 109.46920 * 150.13930 * 5 4 3 29 29 H 1.09001 * 109.47558 * 329.71701 * 7 6 4 30 30 H 1.08998 * 109.47216 * 209.71363 * 7 6 4 31 31 H 1.00901 * 110.99869 * 56.04737 * 8 7 6 32 32 H 1.09004 * 109.47031 * 299.99620 * 9 8 7 33 33 H 1.08995 * 109.47111 * 59.99900 * 9 8 7 34 34 H 1.09002 * 109.47301 * 60.00027 * 11 10 9 35 35 H 1.09001 * 109.47017 * 180.02562 * 11 10 9 36 36 H 1.09005 * 109.47249 * 300.00302 * 11 10 9 37 37 H 1.09001 * 109.46999 * 60.00126 * 12 10 9 38 38 H 1.09001 * 109.46478 * 179.97438 * 12 10 9 39 39 H 1.08993 * 109.47197 * 299.99817 * 12 10 9 40 40 H 0.97007 * 120.00038 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0600 0.0000 4 7 3.6089 0.6348 0.0055 5 6 4.7897 1.5019 0.0136 6 6 3.6150 -0.7157 -0.0008 7 6 4.8360 -1.5988 -0.0013 8 7 5.2328 -1.8867 1.3835 9 6 6.4231 -2.7468 1.4221 10 6 6.8046 -3.0245 2.8776 11 6 7.1073 -1.7029 3.5864 12 6 5.6438 -3.7279 3.5838 13 6 8.0253 -3.9074 2.9172 14 1 8.4828 -4.2378 1.9964 15 6 8.5578 -4.2934 4.1289 16 7 8.0003 -3.8915 5.2501 17 14 10.0704 -5.3884 4.1780 18 1 11.2922 -4.5444 4.1915 19 1 10.0347 -6.2273 5.4029 20 1 10.0869 -6.2639 2.9788 21 6 2.3274 -1.1336 -0.0006 22 17 1.7892 -2.7840 0.0001 23 1 -0.3633 -0.0004 1.0276 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3634 -0.8897 -0.5143 26 1 5.0862 1.7217 -1.0120 27 1 4.5540 2.4319 0.5309 28 1 5.6075 0.9973 0.5280 29 1 5.6521 -1.0904 -0.5148 30 1 4.6089 -2.5326 -0.5157 31 1 4.4706 -2.3001 1.8995 32 1 6.2073 -3.6886 0.9175 33 1 7.2498 -2.2459 0.9186 34 1 6.2241 -1.0646 3.5578 35 1 7.3795 -1.9007 4.6232 36 1 7.9342 -1.2017 3.0833 37 1 5.4282 -4.6695 3.0787 38 1 5.9159 -3.9261 4.6205 39 1 4.7608 -3.0897 3.5551 40 1 8.3748 -4.1633 6.1027 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922179650.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:22 Heat of formation + Delta-G solvation = 44.035682 kcal Electronic energy + Delta-G solvation = -20722.957030 eV Core-core repulsion = 17599.338031 eV Total energy + Delta-G solvation = -3123.618999 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.41821 -38.69174 -37.40023 -35.99905 -34.70675 -33.11584 -31.23021 -30.29609 -27.49890 -27.29109 -27.11070 -26.26073 -24.57870 -21.49473 -20.78256 -20.26928 -18.09704 -17.70348 -16.91196 -16.76139 -16.35337 -15.60837 -15.44629 -15.30421 -14.52939 -14.48344 -14.26268 -14.20209 -13.93374 -13.49520 -13.34203 -13.25444 -13.05486 -12.97205 -12.73599 -12.52120 -12.49789 -12.49176 -12.24071 -12.08879 -12.05370 -11.46269 -11.29948 -10.99868 -10.59204 -10.33186 -10.23624 -9.39358 -9.25484 -7.94875 -6.11637 0.61221 1.02463 1.43803 1.45784 1.46733 1.54162 1.81961 2.48118 3.27760 3.28358 3.55363 3.61580 3.87781 4.24567 4.35862 4.41141 4.48150 4.53145 4.64575 4.68027 4.72028 4.78255 4.88376 4.93188 5.03322 5.05280 5.18114 5.29828 5.43398 5.46170 5.54630 5.72116 5.77974 5.84087 6.08744 6.20264 6.32379 6.43885 6.54117 6.56494 6.97956 7.56244 9.03237 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.026592 B = 0.003964 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.679248 B = 7061.733257 C = 7533.760665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.081 3.919 3 N -0.310 5.310 4 N -0.356 5.356 5 C 0.094 3.906 6 C 0.113 3.887 7 C 0.119 3.881 8 N -0.679 5.679 9 C 0.091 3.909 10 C 0.060 3.940 11 C -0.104 4.104 12 C -0.121 4.121 13 C -0.523 4.523 14 H 0.049 0.951 15 C 0.023 3.977 16 N -0.904 5.904 17 Si 0.943 3.057 18 H -0.279 1.279 19 H -0.288 1.288 20 H -0.272 1.272 21 C -0.203 4.203 22 Cl -0.040 7.040 23 H 0.089 0.911 24 H 0.086 0.914 25 H 0.089 0.911 26 H 0.096 0.904 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.060 0.940 31 H 0.340 0.660 32 H 0.015 0.985 33 H 0.062 0.938 34 H 0.030 0.970 35 H 0.045 0.955 36 H 0.015 0.985 37 H 0.017 0.983 38 H 0.054 0.946 39 H 0.028 0.972 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.240 7.819 -11.894 18.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.085 4.085 3 N -0.133 5.133 4 N -0.137 5.137 5 C -0.045 4.045 6 C -0.018 4.018 7 C -0.012 4.012 8 N -0.311 5.311 9 C -0.038 4.038 10 C 0.059 3.941 11 C -0.161 4.161 12 C -0.179 4.179 13 C -0.562 4.562 14 H 0.067 0.933 15 C -0.176 4.176 16 N -0.543 5.543 17 Si 0.770 3.230 18 H -0.205 1.205 19 H -0.214 1.214 20 H -0.197 1.197 21 C -0.242 4.242 22 Cl -0.012 7.012 23 H 0.107 0.893 24 H 0.105 0.895 25 H 0.108 0.892 26 H 0.114 0.886 27 H 0.117 0.883 28 H 0.118 0.882 29 H 0.117 0.883 30 H 0.078 0.922 31 H 0.159 0.841 32 H 0.034 0.966 33 H 0.080 0.920 34 H 0.049 0.951 35 H 0.064 0.936 36 H 0.035 0.965 37 H 0.036 0.964 38 H 0.073 0.927 39 H 0.047 0.953 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -10.709 9.635 -11.641 18.521 hybrid contribution 0.607 -2.529 0.124 2.603 sum -10.102 7.107 -11.517 16.888 Atomic orbital electron populations 1.20335 0.83960 1.04538 1.04239 1.22719 0.98693 0.88427 0.98658 1.77350 0.86872 1.22433 1.26681 1.48429 1.06050 1.04000 1.55268 1.22220 0.82805 0.94619 1.04886 1.20796 0.95772 0.85432 0.99799 1.20537 0.92200 0.96466 0.91969 1.60606 1.08592 1.50898 1.11025 1.21869 0.90992 0.92675 0.98232 1.18146 0.92825 0.92841 0.90270 1.21450 0.97305 0.96374 1.01018 1.21664 0.96496 0.97324 1.02389 1.21426 1.12314 1.30422 0.92058 0.93314 1.25523 0.99232 0.97262 0.95632 1.69975 1.40973 1.45966 0.97404 0.85794 0.80735 0.79200 0.77259 1.20549 1.21420 1.19664 1.20574 0.92509 0.87470 1.23649 1.98310 1.89725 1.15349 1.97846 0.89277 0.89471 0.89210 0.88560 0.88283 0.88216 0.88250 0.92188 0.84131 0.96645 0.91993 0.95084 0.93596 0.96547 0.96366 0.92701 0.95350 0.93437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.29 10.31 71.24 0.73 -0.55 16 2 C 0.08 2.08 7.22 43.12 0.31 2.39 16 3 N -0.31 -8.62 12.57 -47.34 -0.60 -9.21 16 4 N -0.36 -9.24 4.02 -355.92 -1.43 -10.67 16 5 C 0.09 1.75 11.10 127.77 1.42 3.17 16 6 C 0.11 3.07 6.45 41.40 0.27 3.33 16 7 C 0.12 3.15 5.52 85.55 0.47 3.62 16 8 N -0.68 -22.08 5.70 -517.92 -2.95 -25.03 16 9 C 0.09 3.46 4.59 86.30 0.40 3.86 16 10 C 0.06 2.77 0.57 -52.93 -0.03 2.74 16 11 C -0.10 -4.86 8.09 71.98 0.58 -4.28 16 12 C -0.12 -5.62 7.92 71.98 0.57 -5.05 16 13 C -0.52 -27.32 8.01 25.60 0.21 -27.11 16 14 H 0.05 2.52 7.74 -2.91 -0.02 2.50 16 15 C 0.02 1.20 5.15 84.66 0.44 1.63 16 16 N -0.90 -49.88 9.35 21.45 0.20 -49.68 16 17 Si 0.94 42.56 29.54 68.60 2.03 44.58 16 18 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 19 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 20 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 21 C -0.20 -5.49 6.63 22.02 0.15 -5.35 16 22 Cl -0.04 -1.02 28.59 -2.72 -0.08 -1.10 16 23 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.09 1.40 8.01 -2.39 -0.02 1.38 16 26 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.10 1.90 7.67 -2.39 -0.02 1.88 16 29 H 0.10 2.31 7.74 -2.39 -0.02 2.29 16 30 H 0.06 1.58 7.91 -2.39 -0.02 1.56 16 31 H 0.34 11.75 6.76 -89.69 -0.61 11.15 16 32 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.06 2.31 8.14 -2.39 -0.02 2.30 16 34 H 0.03 1.33 7.60 -2.39 -0.02 1.31 16 35 H 0.05 2.42 6.07 -2.39 -0.01 2.40 16 36 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 37 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.05 2.88 6.07 -2.39 -0.01 2.86 16 39 H 0.03 1.18 6.57 -2.39 -0.02 1.16 16 40 H 0.26 13.68 8.31 -92.70 -0.77 12.91 16 Total: -1.00 -59.62 338.24 3.11 -56.51 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: 0.43 Total: 16.19 kcal Atomic # 6 Polarization: -27.11 SS G_CDS: 5.51 Total: -21.60 kcal Atomic # 7 Polarization: -89.82 SS G_CDS: -4.78 Total: -94.59 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.58 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -0.08 Total: -1.10 kcal Total: -59.62 3.11 -56.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922179650.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.551 kcal (2) G-P(sol) polarization free energy of solvation -59.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds