Wall clock time and date at job start Tue Mar 31 2020 05:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86804 * 120.00510 * 2 1 4 4 H 1.48500 * 109.47377 * 240.00279 * 3 2 1 5 5 H 1.48507 * 109.46674 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47147 * 119.99678 * 3 2 1 7 7 C 1.37880 * 119.99643 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99451 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00097 * 359.97438 * 7 2 1 10 10 O 1.42910 * 110.64097 * 56.86228 * 9 7 2 11 11 C 1.55154 * 110.72240 * 293.52400 * 9 7 2 12 12 C 1.55131 * 101.48875 * 205.96709 * 11 9 7 13 13 N 1.47429 * 104.71976 * 37.29478 * 12 11 9 14 14 C 1.34776 * 125.65090 * 155.81513 * 13 12 11 15 15 O 1.21273 * 120.00414 * 179.69074 * 14 13 12 16 16 C 1.50708 * 119.99549 * 359.69459 * 14 13 12 17 17 C 1.53004 * 109.46666 * 179.97438 * 16 14 13 18 18 O 1.42970 * 109.46671 * 184.99715 * 17 16 14 19 19 C 1.43088 * 113.76784 * 181.20490 * 18 17 16 20 20 C 1.53266 * 108.94070 * 57.97538 * 19 18 17 21 21 C 1.53256 * 108.84362 * 305.47308 * 20 19 18 22 22 O 1.42967 * 109.46965 * 65.00263 * 17 16 14 23 23 C 1.47025 * 108.70362 * 335.55185 * 13 12 11 24 24 H 0.97009 * 119.99970 * 359.97438 * 1 2 3 25 25 H 0.96700 * 113.99267 * 303.13956 * 10 9 7 26 26 H 1.08998 * 111.00104 * 324.20818 * 11 9 7 27 27 H 1.08996 * 111.00614 * 88.05879 * 11 9 7 28 28 H 1.08997 * 110.49959 * 278.45610 * 12 11 9 29 29 H 1.08997 * 110.34247 * 156.05581 * 12 11 9 30 30 H 1.08994 * 109.47294 * 60.00137 * 16 14 13 31 31 H 1.08994 * 109.46992 * 299.99885 * 16 14 13 32 32 H 1.09000 * 109.47270 * 304.99968 * 17 16 14 33 33 H 1.08995 * 109.56374 * 298.13560 * 19 18 17 34 34 H 1.09000 * 109.64812 * 177.86153 * 19 18 17 35 35 H 1.08998 * 109.57715 * 65.28257 * 20 19 18 36 36 H 1.09007 * 109.57203 * 185.66840 * 20 19 18 37 37 H 1.08995 * 109.55791 * 174.36714 * 21 20 19 38 38 H 1.09001 * 109.56197 * 294.68844 * 21 20 19 39 39 H 1.09001 * 109.88226 * 120.70299 * 23 13 12 40 40 H 1.08997 * 109.88260 * 241.71215 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 8 0.3654 -2.5696 -1.1201 11 6 0.4753 -2.6852 1.3303 12 6 0.3772 -4.2310 1.4172 13 7 1.6652 -4.7182 0.8907 14 6 2.2306 -5.9081 1.1753 15 8 3.2954 -6.2080 0.6783 16 6 1.5394 -6.8661 2.1111 17 6 2.3858 -8.1317 2.2619 18 8 1.6774 -9.0870 3.0554 19 6 2.4007 -10.3013 3.2783 20 6 3.7323 -9.9692 3.9605 21 6 4.4775 -8.9321 3.1133 22 8 3.6223 -7.8047 2.9008 23 6 2.2278 -3.6938 -0.0012 24 1 -0.4850 0.8401 0.0004 25 1 -0.2691 -1.8413 -1.1659 26 1 1.0378 -2.2782 2.1705 27 1 -0.5158 -2.2354 1.2711 28 1 -0.4461 -4.5964 0.8034 29 1 0.2477 -4.5448 2.4530 30 1 0.5624 -7.1290 1.7056 31 1 1.4133 -6.3946 3.0857 32 1 2.5862 -8.5543 1.2773 33 1 2.5920 -10.7925 2.3243 34 1 1.8176 -10.9629 3.9189 35 1 3.5423 -9.5613 4.9533 36 1 4.3352 -10.8735 4.0444 37 1 5.3788 -8.6130 3.6365 38 1 4.7474 -9.3714 2.1529 39 1 3.2027 -3.3755 0.3682 40 1 2.3266 -4.0944 -1.0101 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118280341.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:58 Heat of formation + Delta-G solvation = -178.864786 kcal Electronic energy + Delta-G solvation = -23388.936820 eV Core-core repulsion = 19782.650216 eV Total energy + Delta-G solvation = -3606.286604 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.19968 -39.21236 -37.22773 -35.71128 -34.31335 -33.27070 -32.15326 -30.62310 -29.36177 -28.19192 -26.11627 -25.31899 -23.52906 -22.13635 -21.27676 -19.71881 -18.74191 -17.61962 -17.25162 -16.70891 -16.43225 -15.86387 -15.36859 -15.13432 -14.93909 -14.86778 -14.37300 -14.11062 -13.62010 -13.41103 -13.11641 -12.85307 -12.42508 -11.98883 -11.86688 -11.70822 -11.51083 -11.40732 -11.35156 -11.23344 -11.14183 -10.87026 -10.60694 -10.51473 -10.13440 -10.11736 -9.73769 -9.46859 -9.31281 -8.66715 -8.21804 -7.99313 -6.30018 -4.37082 3.07755 3.12011 3.22427 3.26853 3.30957 3.61363 3.85944 4.26913 4.51257 4.52775 4.77501 4.87492 4.90000 4.98599 5.14067 5.14984 5.21625 5.43286 5.52851 5.55150 5.64368 5.70554 5.78722 5.84554 5.94040 6.02338 6.23175 6.46544 6.70875 6.73214 6.91329 6.97543 7.11493 7.30404 7.33911 7.73238 8.00165 8.11847 8.62086 8.66320 9.31142 9.44995 10.77826 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.037476 B = 0.003524 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.957024 B = 7942.616971 C = 8234.920877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.904 3.096 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.536 4.536 8 H 0.064 0.936 9 C 0.248 3.752 10 O -0.587 6.587 11 C -0.137 4.137 12 C 0.094 3.906 13 N -0.608 5.608 14 C 0.529 3.471 15 O -0.546 6.546 16 C -0.123 4.123 17 C 0.266 3.734 18 O -0.396 6.396 19 C 0.059 3.941 20 C -0.194 4.194 21 C 0.058 3.942 22 O -0.375 6.375 23 C 0.124 3.876 24 H 0.270 0.730 25 H 0.386 0.614 26 H 0.068 0.932 27 H 0.085 0.915 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.112 0.888 31 H 0.107 0.893 32 H 0.065 0.935 33 H 0.053 0.947 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.098 0.902 38 H 0.053 0.947 39 H 0.071 0.929 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.182 -15.938 7.257 17.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.130 4.130 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.574 4.574 8 H 0.083 0.917 9 C 0.207 3.793 10 O -0.397 6.397 11 C -0.175 4.175 12 C -0.029 4.029 13 N -0.342 5.342 14 C 0.316 3.684 15 O -0.424 6.424 16 C -0.163 4.163 17 C 0.170 3.830 18 O -0.317 6.317 19 C -0.017 4.017 20 C -0.231 4.231 21 C -0.019 4.019 22 O -0.295 6.295 23 C 0.002 3.998 24 H 0.080 0.920 25 H 0.238 0.762 26 H 0.086 0.914 27 H 0.104 0.896 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.131 0.869 31 H 0.125 0.875 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.116 0.884 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.116 0.884 38 H 0.072 0.928 39 H 0.090 0.910 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.828 -16.349 7.003 17.879 hybrid contribution 0.226 1.076 0.127 1.107 sum 2.054 -15.272 7.129 16.979 Atomic orbital electron populations 1.69562 1.05970 1.27842 1.50461 1.24987 0.95041 0.99554 0.93440 0.86450 0.79526 0.81955 0.78911 1.19977 1.21099 1.20042 1.21525 0.93736 0.90270 1.51848 0.91740 1.19428 0.86176 0.90758 0.82906 1.86098 1.51443 1.53323 1.48853 1.23351 1.02814 0.90276 1.01105 1.22568 0.85134 0.97780 0.97406 1.48595 1.22532 1.16218 1.46817 1.19671 0.85264 0.81312 0.82104 1.90679 1.22093 1.75926 1.53740 1.21427 0.99489 0.93467 1.01894 1.22904 0.80983 0.88439 0.90642 1.88058 1.43368 1.26678 1.73590 1.22612 0.92824 0.86485 0.99817 1.22818 0.98124 1.00839 1.01362 1.22603 0.93451 0.87118 0.98753 1.88213 1.28774 1.32281 1.80220 1.22074 0.97454 0.87518 0.92735 0.92035 0.76191 0.91361 0.89642 0.91746 0.92017 0.86944 0.87474 0.91762 0.92845 0.88362 0.90027 0.89861 0.88428 0.92828 0.91039 0.92121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.94 10.70 55.43 0.59 -22.34 16 2 C 0.07 1.84 5.28 -17.82 -0.09 1.75 16 3 Si 0.90 20.22 29.54 -169.99 -5.02 15.20 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.29 -6.31 7.11 56.52 0.40 -5.90 16 6 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.54 -14.01 8.21 -34.44 -0.28 -14.30 16 8 H 0.06 1.69 7.53 -52.48 -0.40 1.30 16 9 C 0.25 5.98 0.85 -89.94 -0.08 5.90 16 10 O -0.59 -14.78 13.09 -35.23 -0.46 -15.24 16 11 C -0.14 -2.92 5.69 -24.46 -0.14 -3.06 16 12 C 0.09 1.68 6.70 -2.41 -0.02 1.66 16 13 N -0.61 -12.14 3.32 -170.37 -0.57 -12.71 16 14 C 0.53 10.07 7.73 -10.98 -0.08 9.99 16 15 O -0.55 -12.04 15.75 -8.85 -0.14 -12.18 16 16 C -0.12 -1.81 4.78 -27.88 -0.13 -1.94 16 17 C 0.27 3.86 2.80 37.16 0.10 3.96 16 18 O -0.40 -5.12 10.54 -59.03 -0.62 -5.74 16 19 C 0.06 0.55 6.96 37.30 0.26 0.81 16 20 C -0.19 -1.70 6.35 -26.46 -0.17 -1.87 16 21 C 0.06 0.65 6.96 37.29 0.26 0.91 16 22 O -0.37 -5.87 9.77 -64.76 -0.63 -6.50 16 23 C 0.12 2.82 6.22 -3.06 -0.02 2.80 16 24 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 25 H 0.39 9.79 6.98 45.56 0.32 10.10 16 26 H 0.07 1.50 8.04 -51.93 -0.42 1.08 16 27 H 0.09 1.88 7.77 -51.93 -0.40 1.48 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.06 0.92 7.48 -51.93 -0.39 0.54 16 30 H 0.11 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.11 1.48 7.85 -51.93 -0.41 1.08 16 32 H 0.07 0.95 7.96 -51.93 -0.41 0.54 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 1.67 7.63 -51.93 -0.40 1.27 16 40 H 0.06 1.43 8.07 -51.93 -0.42 1.01 16 LS Contribution 325.32 15.07 4.90 4.90 Total: -1.00 -29.87 325.32 -7.78 -37.65 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -5.44 Total: 10.34 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: -0.39 Total: 6.63 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: 0.03 Total: -35.05 kcal Atomic # 8 Polarization: -37.81 SS G_CDS: -1.86 Total: -39.67 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.87 -7.78 -37.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118280341.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.217 kcal (2) G-P(sol) polarization free energy of solvation -29.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds