Wall clock time and date at job start Tue Mar 31 2020 05:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86804 * 120.00510 * 2 1 4 4 H 1.48500 * 109.47377 * 240.00279 * 3 2 1 5 5 H 1.48507 * 109.46674 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47147 * 119.99678 * 3 2 1 7 7 C 1.37880 * 119.99643 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99451 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00097 * 359.97438 * 7 2 1 10 10 O 1.42910 * 110.64097 * 56.86228 * 9 7 2 11 11 C 1.55154 * 110.72240 * 293.52400 * 9 7 2 12 12 C 1.55131 * 101.48875 * 205.96709 * 11 9 7 13 13 N 1.47429 * 104.71976 * 37.29478 * 12 11 9 14 14 C 1.34776 * 125.65090 * 155.81513 * 13 12 11 15 15 O 1.21273 * 120.00414 * 179.69074 * 14 13 12 16 16 C 1.50708 * 119.99549 * 359.69459 * 14 13 12 17 17 C 1.53004 * 109.46666 * 179.97438 * 16 14 13 18 18 O 1.42970 * 109.46671 * 184.99715 * 17 16 14 19 19 C 1.43088 * 113.76784 * 181.20490 * 18 17 16 20 20 C 1.53266 * 108.94070 * 57.97538 * 19 18 17 21 21 C 1.53256 * 108.84362 * 305.47308 * 20 19 18 22 22 O 1.42967 * 109.46965 * 65.00263 * 17 16 14 23 23 C 1.47025 * 108.70362 * 335.55185 * 13 12 11 24 24 H 0.97009 * 119.99970 * 359.97438 * 1 2 3 25 25 H 0.96700 * 113.99267 * 303.13956 * 10 9 7 26 26 H 1.08998 * 111.00104 * 324.20818 * 11 9 7 27 27 H 1.08996 * 111.00614 * 88.05879 * 11 9 7 28 28 H 1.08997 * 110.49959 * 278.45610 * 12 11 9 29 29 H 1.08997 * 110.34247 * 156.05581 * 12 11 9 30 30 H 1.08994 * 109.47294 * 60.00137 * 16 14 13 31 31 H 1.08994 * 109.46992 * 299.99885 * 16 14 13 32 32 H 1.09000 * 109.47270 * 304.99968 * 17 16 14 33 33 H 1.08995 * 109.56374 * 298.13560 * 19 18 17 34 34 H 1.09000 * 109.64812 * 177.86153 * 19 18 17 35 35 H 1.08998 * 109.57715 * 65.28257 * 20 19 18 36 36 H 1.09007 * 109.57203 * 185.66840 * 20 19 18 37 37 H 1.08995 * 109.55791 * 174.36714 * 21 20 19 38 38 H 1.09001 * 109.56197 * 294.68844 * 21 20 19 39 39 H 1.09001 * 109.88226 * 120.70299 * 23 13 12 40 40 H 1.08997 * 109.88260 * 241.71215 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 8 0.3654 -2.5696 -1.1201 11 6 0.4753 -2.6852 1.3303 12 6 0.3772 -4.2310 1.4172 13 7 1.6652 -4.7182 0.8907 14 6 2.2306 -5.9081 1.1753 15 8 3.2954 -6.2080 0.6783 16 6 1.5394 -6.8661 2.1111 17 6 2.3858 -8.1317 2.2619 18 8 1.6774 -9.0870 3.0554 19 6 2.4007 -10.3013 3.2783 20 6 3.7323 -9.9692 3.9605 21 6 4.4775 -8.9321 3.1133 22 8 3.6223 -7.8047 2.9008 23 6 2.2278 -3.6938 -0.0012 24 1 -0.4850 0.8401 0.0004 25 1 -0.2691 -1.8413 -1.1659 26 1 1.0378 -2.2782 2.1705 27 1 -0.5158 -2.2354 1.2711 28 1 -0.4461 -4.5964 0.8034 29 1 0.2477 -4.5448 2.4530 30 1 0.5624 -7.1290 1.7056 31 1 1.4133 -6.3946 3.0857 32 1 2.5862 -8.5543 1.2773 33 1 2.5920 -10.7925 2.3243 34 1 1.8176 -10.9629 3.9189 35 1 3.5423 -9.5613 4.9533 36 1 4.3352 -10.8735 4.0444 37 1 5.3788 -8.6130 3.6365 38 1 4.7474 -9.3714 2.1529 39 1 3.2027 -3.3755 0.3682 40 1 2.3266 -4.0944 -1.0101 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118280341.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:58 Heat of formation + Delta-G solvation = -200.198967 kcal Electronic energy + Delta-G solvation = -23389.861939 eV Core-core repulsion = 19782.650216 eV Total energy + Delta-G solvation = -3607.211723 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.38487 -40.58501 -38.92946 -36.68964 -36.10598 -34.21558 -34.14254 -31.98977 -30.85384 -29.88430 -27.12145 -26.91576 -24.85965 -23.61548 -22.12594 -21.52109 -20.25054 -19.22017 -18.69568 -17.93238 -17.44499 -17.17410 -16.95015 -16.75898 -16.24373 -15.93680 -15.72187 -15.57772 -15.16688 -14.79540 -14.29381 -14.05011 -13.89377 -13.75108 -13.35007 -13.23282 -13.15539 -13.00237 -12.65223 -12.44122 -12.41363 -12.28414 -12.11074 -12.08353 -11.97258 -11.29495 -11.02098 -10.92902 -10.68280 -10.62004 -10.13614 -9.62624 -8.25627 -6.39599 1.43289 1.44766 1.52008 1.59785 1.83356 2.39184 2.64676 2.68706 2.99845 3.55290 3.74800 3.79222 3.81676 3.87537 4.01024 4.01977 4.22293 4.31061 4.39726 4.43870 4.45042 4.49065 4.59438 4.63500 4.73700 4.82487 4.84917 4.92875 5.11707 5.18996 5.24749 5.46781 5.52911 5.76549 5.83653 6.06063 6.15485 6.56826 6.64770 7.11210 7.31206 7.45325 8.80609 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.037476 B = 0.003524 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.957024 B = 7942.616971 C = 8234.920877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.038 3.962 3 Si 0.960 3.040 4 H -0.278 1.278 5 H -0.276 1.276 6 H -0.274 1.274 7 C -0.566 4.566 8 H 0.051 0.949 9 C 0.236 3.764 10 O -0.594 6.594 11 C -0.129 4.129 12 C 0.102 3.898 13 N -0.612 5.612 14 C 0.526 3.474 15 O -0.582 6.582 16 C -0.113 4.113 17 C 0.267 3.733 18 O -0.404 6.404 19 C 0.048 3.952 20 C -0.184 4.184 21 C 0.044 3.956 22 O -0.408 6.408 23 C 0.130 3.870 24 H 0.273 0.727 25 H 0.383 0.617 26 H 0.058 0.942 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.102 0.898 30 H 0.140 0.860 31 H 0.122 0.878 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.124 0.876 35 H 0.077 0.923 36 H 0.113 0.887 37 H 0.106 0.894 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.446 -17.155 8.710 19.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.164 4.164 3 Si 0.785 3.215 4 H -0.203 1.203 5 H -0.201 1.201 6 H -0.199 1.199 7 C -0.604 4.604 8 H 0.069 0.931 9 C 0.195 3.805 10 O -0.404 6.404 11 C -0.168 4.168 12 C -0.019 4.019 13 N -0.345 5.345 14 C 0.316 3.684 15 O -0.463 6.463 16 C -0.153 4.153 17 C 0.172 3.828 18 O -0.325 6.325 19 C -0.028 4.028 20 C -0.222 4.222 21 C -0.032 4.032 22 O -0.329 6.329 23 C 0.007 3.993 24 H 0.083 0.917 25 H 0.234 0.766 26 H 0.077 0.923 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.120 0.880 30 H 0.158 0.842 31 H 0.140 0.860 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.142 0.858 35 H 0.096 0.904 36 H 0.131 0.869 37 H 0.124 0.876 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.073 -17.590 8.474 19.554 hybrid contribution 0.505 1.407 -0.346 1.535 sum 1.578 -16.183 8.128 18.178 Atomic orbital electron populations 1.69613 1.06523 1.28601 1.49883 1.25584 0.95901 1.01936 0.92951 0.85589 0.78504 0.78821 0.78562 1.20343 1.20114 1.19877 1.21747 0.93472 0.91926 1.53261 0.93059 1.19567 0.86545 0.90465 0.83878 1.86082 1.51498 1.53086 1.49746 1.23142 1.01575 0.93082 0.98966 1.22616 0.84367 0.94962 0.99970 1.48658 1.23188 1.16165 1.46512 1.20479 0.84841 0.81187 0.81924 1.90657 1.23868 1.76572 1.55171 1.21421 1.00079 0.92555 1.01198 1.22741 0.80903 0.88649 0.90526 1.88024 1.43740 1.27563 1.73212 1.22962 0.93343 0.85505 1.01002 1.22764 0.97954 1.01138 1.00295 1.22885 0.93685 0.87010 0.99583 1.88163 1.29637 1.34610 1.80458 1.21774 0.96828 0.88134 0.92552 0.91695 0.76568 0.92292 0.90355 0.90453 0.88012 0.84174 0.86031 0.92750 0.91913 0.85842 0.90382 0.86859 0.87598 0.92720 0.92577 0.93848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.08 10.70 21.45 0.23 -45.85 16 2 C 0.04 1.93 5.28 84.66 0.45 2.37 16 3 Si 0.96 41.43 29.54 68.60 2.03 43.46 16 4 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 6 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.57 -30.22 8.21 25.60 0.21 -30.01 16 8 H 0.05 2.79 7.53 -2.91 -0.02 2.77 16 9 C 0.24 11.53 0.85 -10.35 -0.01 11.52 16 10 O -0.59 -30.30 13.09 -148.98 -1.95 -32.25 16 11 C -0.13 -5.44 5.69 32.06 0.18 -5.26 16 12 C 0.10 3.46 6.70 86.93 0.58 4.04 16 13 N -0.61 -24.04 3.32 -811.34 -2.70 -26.74 16 14 C 0.53 19.64 7.73 87.66 0.68 20.32 16 15 O -0.58 -26.00 15.75 10.77 0.17 -25.83 16 16 C -0.11 -3.08 4.78 29.85 0.14 -2.94 16 17 C 0.27 7.38 2.80 71.98 0.20 7.58 16 18 O -0.40 -9.49 10.54 -126.22 -1.33 -10.82 16 19 C 0.05 0.76 6.96 72.07 0.50 1.26 16 20 C -0.18 -2.76 6.35 30.77 0.20 -2.56 16 21 C 0.04 0.95 6.96 72.07 0.50 1.45 16 22 O -0.41 -12.45 9.77 -120.75 -1.18 -13.63 16 23 C 0.13 6.08 6.22 86.73 0.54 6.62 16 24 H 0.27 13.21 8.31 -92.70 -0.77 12.44 16 25 H 0.38 19.64 6.98 -74.06 -0.52 19.13 16 26 H 0.06 2.56 8.04 -2.39 -0.02 2.54 16 27 H 0.08 3.40 7.77 -2.39 -0.02 3.38 16 28 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 29 H 0.10 2.67 7.48 -2.39 -0.02 2.65 16 30 H 0.14 3.02 8.14 -2.39 -0.02 3.00 16 31 H 0.12 2.99 7.85 -2.39 -0.02 2.98 16 32 H 0.06 1.58 7.96 -2.39 -0.02 1.56 16 33 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.11 1.01 8.14 -2.38 -0.02 0.99 16 37 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.06 2.74 7.63 -2.39 -0.02 2.72 16 40 H 0.04 2.13 8.07 -2.39 -0.02 2.11 16 Total: -1.00 -65.07 325.32 -0.04 -65.10 By element: Atomic # 1 Polarization: 31.62 SS G_CDS: 0.53 Total: 32.14 kcal Atomic # 6 Polarization: 10.24 SS G_CDS: 4.17 Total: 14.41 kcal Atomic # 7 Polarization: -70.12 SS G_CDS: -2.47 Total: -72.59 kcal Atomic # 8 Polarization: -78.23 SS G_CDS: -4.29 Total: -82.53 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -65.07 -0.04 -65.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118280341.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.094 kcal (2) G-P(sol) polarization free energy of solvation -65.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds