Wall clock time and date at job start Tue Mar 31 2020 06:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45198 * 109.47633 * 2 1 4 4 C 1.34226 * 117.00203 * 179.97438 * 3 2 1 5 5 O 1.20822 * 119.99866 * 359.97438 * 4 3 2 6 6 C 1.50705 * 119.99653 * 179.97438 * 4 3 2 7 7 C 1.52994 * 109.46560 * 174.48111 * 6 4 3 8 8 N 1.46499 * 113.00106 * 302.71334 * 7 6 4 9 9 C 1.34781 * 120.00156 * 293.39742 * 8 7 6 10 10 O 1.21278 * 119.99720 * 354.94640 * 9 8 7 11 11 C 1.50700 * 120.00070 * 174.95012 * 9 8 7 12 12 C 1.53000 * 109.47005 * 180.02562 * 11 9 8 13 13 C 1.50701 * 109.47327 * 179.97438 * 12 11 9 14 14 H 1.08002 * 119.99541 * 359.97438 * 13 12 11 15 15 C 1.37866 * 120.00141 * 180.02562 * 13 12 11 16 16 N 1.31521 * 120.00187 * 179.97438 * 15 13 12 17 17 Si 1.86809 * 120.00159 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.46779 * 90.00261 * 17 15 13 19 19 H 1.48497 * 109.47081 * 210.00289 * 17 15 13 20 20 H 1.48497 * 109.47024 * 330.00505 * 17 15 13 21 21 C 1.54037 * 113.93195 * 74.64788 * 7 6 4 22 22 O 1.44178 * 85.51968 * 136.81196 * 21 7 6 23 23 C 1.44179 * 93.34243 * 335.80916 * 22 21 7 24 24 H 1.09000 * 109.47745 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47347 * 300.00730 * 1 2 3 26 26 H 1.09001 * 109.46856 * 60.00047 * 1 2 3 27 27 H 1.08999 * 109.47347 * 239.99270 * 2 1 3 28 28 H 1.09001 * 109.46856 * 119.99952 * 2 1 3 29 29 H 1.08997 * 109.47054 * 54.48393 * 6 4 3 30 30 H 1.09001 * 109.46834 * 294.47572 * 6 4 3 31 31 H 0.97005 * 120.00123 * 113.40130 * 8 7 6 32 32 H 1.09001 * 109.47268 * 59.99932 * 11 9 8 33 33 H 1.08999 * 109.46692 * 299.99931 * 11 9 8 34 34 H 1.09000 * 109.47105 * 300.00031 * 12 11 9 35 35 H 1.09001 * 109.47174 * 59.99862 * 12 11 9 36 36 H 0.97001 * 120.00127 * 179.97438 * 16 15 13 37 37 H 1.09003 * 113.86539 * 250.96496 * 21 7 6 38 38 H 1.09007 * 113.86079 * 22.66783 * 21 7 6 39 39 H 1.08994 * 113.86484 * 270.04670 * 23 22 21 40 40 H 1.09001 * 113.98003 * 138.34565 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0807 0.5865 0.0015 6 6 3.9208 2.9373 0.0000 7 6 5.4424 2.8597 0.1395 8 7 5.8711 2.1458 1.3448 9 6 5.6219 2.6681 2.5620 10 8 5.1256 3.7705 2.6587 11 6 5.9599 1.8824 3.8027 12 6 5.5789 2.6960 5.0412 13 6 5.9164 1.9100 6.2819 14 1 6.3580 0.9282 6.1957 15 6 5.6604 2.4439 7.5270 16 7 5.9544 1.7578 8.6099 17 14 4.8959 4.1419 7.6761 18 1 3.4162 4.0181 7.6990 19 1 5.3584 4.7844 8.9324 20 1 5.3052 4.9727 6.5153 21 6 6.1650 2.4053 -1.1427 22 8 7.1087 3.4547 -0.8474 23 6 6.1559 4.2086 -0.0713 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8900 29 1 3.5076 3.5017 0.8359 30 1 3.6666 3.4352 -0.9358 31 1 6.3343 1.2970 1.2668 32 1 7.0295 1.6729 3.8200 33 1 5.4058 0.9437 3.8005 34 1 6.1326 3.6349 5.0436 35 1 4.5093 2.9051 5.0237 36 1 5.7746 2.1336 9.4859 37 1 6.5868 1.4022 -1.0793 38 1 5.5916 2.5718 -2.0547 39 1 5.5796 4.9256 -0.6560 40 1 6.5684 4.6367 0.8423 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120788727.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:53 Heat of formation + Delta-G solvation = -141.796829 kcal Electronic energy + Delta-G solvation = -23213.069543 eV Core-core repulsion = 19608.390327 eV Total energy + Delta-G solvation = -3604.679217 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.49793 -40.22412 -38.70459 -36.81607 -34.14981 -33.49627 -32.25831 -31.56423 -30.78978 -27.25430 -26.85112 -25.94424 -23.51509 -21.96218 -21.42846 -19.91910 -19.45708 -17.94013 -17.37368 -16.98446 -16.79943 -16.43650 -16.07445 -15.78616 -15.37614 -14.88937 -14.60065 -14.43344 -14.09674 -13.47442 -13.28592 -13.07325 -12.91565 -12.68242 -12.57493 -12.40657 -12.04733 -11.83649 -11.50066 -11.44220 -11.02654 -10.97352 -10.73873 -10.56306 -10.19387 -10.18442 -10.05652 -9.79023 -9.26248 -9.18302 -8.92878 -8.51210 -6.03181 -4.02081 2.06005 2.43693 2.96604 3.14749 3.36805 3.43524 3.50509 3.53743 3.87375 4.36694 4.50093 4.60360 4.67589 4.74483 4.88574 4.98305 5.01874 5.05471 5.22283 5.32096 5.39108 5.45613 5.50030 5.52158 5.60228 5.71581 5.78354 5.89515 6.07565 6.08481 6.27572 6.54462 6.67774 7.33867 7.41963 7.58383 7.70293 7.78365 8.47671 8.57372 8.99929 9.59568 11.09715 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.013883 B = 0.004781 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.341229 B = 5854.520177 C = 7119.802090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.062 3.938 3 O -0.360 6.360 4 C 0.469 3.531 5 O -0.502 6.502 6 C -0.129 4.129 7 C 0.125 3.875 8 N -0.711 5.711 9 C 0.514 3.486 10 O -0.539 6.539 11 C -0.122 4.122 12 C 0.003 3.997 13 C -0.525 4.525 14 H 0.072 0.928 15 C 0.069 3.931 16 N -0.903 5.903 17 Si 0.878 3.122 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.261 1.261 21 C 0.044 3.956 22 O -0.375 6.375 23 C 0.042 3.958 24 H 0.079 0.921 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.123 0.877 30 H 0.116 0.884 31 H 0.409 0.591 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.024 0.976 35 H 0.018 0.982 36 H 0.263 0.737 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.055 -0.691 -23.256 24.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.012 4.012 3 O -0.277 6.277 4 C 0.311 3.689 5 O -0.390 6.390 6 C -0.168 4.168 7 C 0.037 3.963 8 N -0.365 5.365 9 C 0.303 3.697 10 O -0.415 6.415 11 C -0.162 4.162 12 C -0.035 4.035 13 C -0.563 4.563 14 H 0.090 0.910 15 C -0.132 4.132 16 N -0.542 5.542 17 Si 0.705 3.295 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.185 1.185 21 C -0.033 4.033 22 O -0.293 6.293 23 C -0.036 4.036 24 H 0.098 0.902 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.141 0.859 30 H 0.134 0.866 31 H 0.245 0.755 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.043 0.957 35 H 0.036 0.964 36 H 0.073 0.927 37 H 0.119 0.881 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.957 -0.178 -23.030 24.059 hybrid contribution -0.452 0.143 0.254 0.538 sum -7.409 -0.035 -22.776 23.951 Atomic orbital electron populations 1.21810 0.92621 1.03011 1.03569 1.23032 0.95406 0.80067 1.02676 1.86506 1.24588 1.32601 1.83999 1.23509 0.80602 0.92510 0.72243 1.90632 1.60318 1.42975 1.45032 1.21911 0.95758 0.92234 1.06863 1.22879 0.91302 0.94303 0.87844 1.45822 1.61430 1.25436 1.03786 1.21626 0.76585 0.86832 0.84630 1.90627 1.43518 1.20327 1.87048 1.21678 1.02923 0.99816 0.91738 1.19360 0.96951 0.95706 0.91441 1.21110 1.41874 1.04200 0.89118 0.90950 1.24969 0.95015 0.97493 0.95726 1.69916 1.48480 1.38019 0.97813 0.86794 0.79833 0.85183 0.77722 1.20296 1.21425 1.18520 1.24263 0.89625 0.94116 0.95291 1.89731 1.31149 1.36161 1.72275 1.24354 0.89316 0.93656 0.96271 0.90195 0.91270 0.91609 0.91310 0.90965 0.85907 0.86589 0.75534 0.89443 0.89599 0.95747 0.96366 0.92716 0.88073 0.89184 0.89166 0.87582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 10.29 37.16 0.38 -0.71 16 2 C 0.06 0.59 6.19 37.16 0.23 0.82 16 3 O -0.36 -4.20 10.22 -39.25 -0.40 -4.60 16 4 C 0.47 5.70 7.73 36.01 0.28 5.98 16 5 O -0.50 -6.81 14.68 -18.75 -0.28 -7.08 16 6 C -0.13 -1.37 5.15 -27.88 -0.14 -1.52 16 7 C 0.13 1.47 0.31 -130.74 -0.04 1.43 16 8 N -0.71 -9.90 4.23 -53.74 -0.23 -10.13 16 9 C 0.51 9.13 7.40 -10.98 -0.08 9.05 16 10 O -0.54 -10.93 13.98 5.56 0.08 -10.85 16 11 C -0.12 -2.39 5.64 -27.88 -0.16 -2.55 16 12 C 0.00 0.08 3.33 -27.88 -0.09 -0.01 16 13 C -0.53 -15.10 9.66 -34.44 -0.33 -15.43 16 14 H 0.07 2.18 7.99 -52.49 -0.42 1.77 16 15 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 16 N -0.90 -28.11 13.96 55.43 0.77 -27.34 16 17 Si 0.88 22.54 27.47 -169.99 -4.67 17.87 16 18 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 20 H -0.26 -6.63 6.54 56.52 0.37 -6.26 16 21 C 0.04 0.44 7.94 37.61 0.30 0.74 16 22 O -0.37 -4.72 12.45 -35.23 -0.44 -5.16 16 23 C 0.04 0.49 8.06 37.61 0.30 0.79 16 24 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 28 H 0.07 0.75 8.13 -51.93 -0.42 0.33 16 29 H 0.12 1.53 7.19 -51.93 -0.37 1.16 16 30 H 0.12 0.82 8.13 -51.93 -0.42 0.40 16 31 H 0.41 5.12 8.67 -40.82 -0.35 4.77 16 32 H 0.09 1.61 8.14 -51.93 -0.42 1.18 16 33 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 34 H 0.02 0.63 7.16 -51.93 -0.37 0.26 16 35 H 0.02 0.46 7.53 -51.93 -0.39 0.07 16 36 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 37 H 0.10 0.97 8.09 -51.93 -0.42 0.55 16 38 H 0.09 0.67 8.09 -51.92 -0.42 0.25 16 39 H 0.09 0.80 8.10 -51.93 -0.42 0.38 16 40 H 0.11 1.48 7.31 -51.93 -0.38 1.11 16 LS Contribution 338.45 15.07 5.10 5.10 Total: -1.00 -34.72 338.45 -5.61 -40.33 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -6.10 Total: 1.31 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: 0.55 Total: 0.55 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: 0.55 Total: -37.47 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -1.04 Total: -27.69 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.67 Total: 17.87 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.72 -5.61 -40.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120788727.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.466 kcal (2) G-P(sol) polarization free energy of solvation -34.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds