Wall clock time and date at job start Tue Mar 31 2020 06:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45198 * 109.47633 * 2 1 4 4 C 1.34226 * 117.00203 * 179.97438 * 3 2 1 5 5 O 1.20822 * 119.99866 * 359.97438 * 4 3 2 6 6 C 1.50705 * 119.99653 * 179.97438 * 4 3 2 7 7 C 1.52994 * 109.46560 * 174.48111 * 6 4 3 8 8 N 1.46499 * 113.00106 * 302.71334 * 7 6 4 9 9 C 1.34781 * 120.00156 * 293.39742 * 8 7 6 10 10 O 1.21278 * 119.99720 * 354.94640 * 9 8 7 11 11 C 1.50700 * 120.00070 * 174.95012 * 9 8 7 12 12 C 1.53000 * 109.47005 * 180.02562 * 11 9 8 13 13 C 1.50701 * 109.47327 * 179.97438 * 12 11 9 14 14 H 1.08002 * 119.99541 * 359.97438 * 13 12 11 15 15 C 1.37866 * 120.00141 * 180.02562 * 13 12 11 16 16 N 1.31521 * 120.00187 * 179.97438 * 15 13 12 17 17 Si 1.86809 * 120.00159 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.46779 * 90.00261 * 17 15 13 19 19 H 1.48497 * 109.47081 * 210.00289 * 17 15 13 20 20 H 1.48497 * 109.47024 * 330.00505 * 17 15 13 21 21 C 1.54037 * 113.93195 * 74.64788 * 7 6 4 22 22 O 1.44178 * 85.51968 * 136.81196 * 21 7 6 23 23 C 1.44179 * 93.34243 * 335.80916 * 22 21 7 24 24 H 1.09000 * 109.47745 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47347 * 300.00730 * 1 2 3 26 26 H 1.09001 * 109.46856 * 60.00047 * 1 2 3 27 27 H 1.08999 * 109.47347 * 239.99270 * 2 1 3 28 28 H 1.09001 * 109.46856 * 119.99952 * 2 1 3 29 29 H 1.08997 * 109.47054 * 54.48393 * 6 4 3 30 30 H 1.09001 * 109.46834 * 294.47572 * 6 4 3 31 31 H 0.97005 * 120.00123 * 113.40130 * 8 7 6 32 32 H 1.09001 * 109.47268 * 59.99932 * 11 9 8 33 33 H 1.08999 * 109.46692 * 299.99931 * 11 9 8 34 34 H 1.09000 * 109.47105 * 300.00031 * 12 11 9 35 35 H 1.09001 * 109.47174 * 59.99862 * 12 11 9 36 36 H 0.97001 * 120.00127 * 179.97438 * 16 15 13 37 37 H 1.09003 * 113.86539 * 250.96496 * 21 7 6 38 38 H 1.09007 * 113.86079 * 22.66783 * 21 7 6 39 39 H 1.08994 * 113.86484 * 270.04670 * 23 22 21 40 40 H 1.09001 * 113.98003 * 138.34565 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0807 0.5865 0.0015 6 6 3.9208 2.9373 0.0000 7 6 5.4424 2.8597 0.1395 8 7 5.8711 2.1458 1.3448 9 6 5.6219 2.6681 2.5620 10 8 5.1256 3.7705 2.6587 11 6 5.9599 1.8824 3.8027 12 6 5.5789 2.6960 5.0412 13 6 5.9164 1.9100 6.2819 14 1 6.3580 0.9282 6.1957 15 6 5.6604 2.4439 7.5270 16 7 5.9544 1.7578 8.6099 17 14 4.8959 4.1419 7.6761 18 1 3.4162 4.0181 7.6990 19 1 5.3584 4.7844 8.9324 20 1 5.3052 4.9727 6.5153 21 6 6.1650 2.4053 -1.1427 22 8 7.1087 3.4547 -0.8474 23 6 6.1559 4.2086 -0.0713 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8900 29 1 3.5076 3.5017 0.8359 30 1 3.6666 3.4352 -0.9358 31 1 6.3343 1.2970 1.2668 32 1 7.0295 1.6729 3.8200 33 1 5.4058 0.9437 3.8005 34 1 6.1326 3.6349 5.0436 35 1 4.5093 2.9051 5.0237 36 1 5.7746 2.1336 9.4859 37 1 6.5868 1.4022 -1.0793 38 1 5.5916 2.5718 -2.0547 39 1 5.5796 4.9256 -0.6560 40 1 6.5684 4.6367 0.8423 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120788727.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:52 Heat of formation + Delta-G solvation = -166.997873 kcal Electronic energy + Delta-G solvation = -23214.162343 eV Core-core repulsion = 19608.390327 eV Total energy + Delta-G solvation = -3605.772016 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.45609 -41.14080 -40.03062 -37.71651 -35.61968 -35.23192 -33.50300 -32.90340 -31.97186 -28.45925 -27.67867 -27.55500 -24.22290 -23.66414 -22.32386 -21.46364 -20.55000 -19.28432 -18.80101 -17.99334 -17.84763 -17.60323 -17.10806 -16.90864 -16.38645 -16.25436 -16.14062 -15.69007 -15.33897 -14.78203 -14.58323 -14.39292 -14.25301 -13.64236 -13.50180 -13.46130 -13.40935 -12.91999 -12.83251 -12.53169 -12.45355 -12.13968 -11.99823 -11.91435 -11.78005 -11.53127 -11.49294 -11.42309 -11.14881 -10.79438 -10.64283 -10.06841 -8.32555 -6.36349 1.14922 1.33098 1.34999 1.49904 1.57696 1.63029 2.03033 2.34285 2.61254 3.00001 3.03046 3.48669 3.79656 3.96504 3.99333 4.06511 4.09796 4.29133 4.30249 4.33757 4.39191 4.43018 4.48305 4.61851 4.65901 4.83410 4.90615 4.93152 4.95507 5.07574 5.13640 5.29303 5.41615 5.45450 5.46855 5.59278 6.21643 6.46989 6.69278 6.69950 7.20161 7.29078 8.83394 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.013883 B = 0.004781 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.341229 B = 5854.520177 C = 7119.802090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.055 3.945 3 O -0.367 6.367 4 C 0.465 3.535 5 O -0.521 6.521 6 C -0.124 4.124 7 C 0.112 3.888 8 N -0.698 5.698 9 C 0.520 3.480 10 O -0.566 6.566 11 C -0.119 4.119 12 C 0.010 3.990 13 C -0.533 4.533 14 H 0.045 0.955 15 C 0.013 3.987 16 N -0.945 5.945 17 Si 0.941 3.059 18 H -0.268 1.268 19 H -0.278 1.278 20 H -0.258 1.258 21 C 0.054 3.946 22 O -0.396 6.396 23 C 0.043 3.957 24 H 0.099 0.901 25 H 0.060 0.940 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.058 0.942 29 H 0.106 0.894 30 H 0.159 0.841 31 H 0.415 0.585 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.014 0.986 35 H 0.011 0.989 36 H 0.268 0.732 37 H 0.103 0.897 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.107 0.117 -25.643 26.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.019 4.019 3 O -0.284 6.284 4 C 0.309 3.691 5 O -0.410 6.410 6 C -0.162 4.162 7 C 0.024 3.976 8 N -0.351 5.351 9 C 0.308 3.692 10 O -0.445 6.445 11 C -0.158 4.158 12 C -0.028 4.028 13 C -0.571 4.571 14 H 0.063 0.937 15 C -0.184 4.184 16 N -0.585 5.585 17 Si 0.765 3.235 18 H -0.193 1.193 19 H -0.204 1.204 20 H -0.182 1.182 21 C -0.022 4.022 22 O -0.316 6.316 23 C -0.034 4.034 24 H 0.117 0.883 25 H 0.079 0.921 26 H 0.093 0.907 27 H 0.097 0.903 28 H 0.076 0.924 29 H 0.124 0.876 30 H 0.176 0.824 31 H 0.253 0.747 32 H 0.116 0.884 33 H 0.111 0.889 34 H 0.033 0.967 35 H 0.029 0.971 36 H 0.077 0.923 37 H 0.121 0.879 38 H 0.142 0.858 39 H 0.142 0.858 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.009 0.605 -25.455 26.692 hybrid contribution -0.099 -0.225 0.955 0.986 sum -8.108 0.380 -24.500 25.809 Atomic orbital electron populations 1.21827 0.90769 1.04307 1.03589 1.23246 0.96916 0.79219 1.02484 1.86510 1.24379 1.33755 1.83750 1.23819 0.80694 0.92885 0.71682 1.90621 1.60677 1.43677 1.46043 1.21943 0.94449 0.91460 1.08343 1.23190 0.92360 0.94560 0.87449 1.45630 1.60286 1.25538 1.03619 1.21072 0.76667 0.86204 0.85238 1.90615 1.45086 1.21284 1.87533 1.21490 1.03721 0.99518 0.91116 1.19186 0.96167 0.95368 0.92115 1.21427 1.41151 1.03542 0.90931 0.93684 1.25838 0.95642 1.01512 0.95449 1.70036 1.49966 1.40030 0.98510 0.85782 0.79299 0.80360 0.78012 1.19283 1.20366 1.18166 1.24457 0.88755 0.93688 0.95312 1.89717 1.32360 1.37053 1.72443 1.24411 0.89136 0.94020 0.95830 0.88286 0.92110 0.90662 0.90324 0.92361 0.87618 0.82376 0.74737 0.88402 0.88934 0.96729 0.97097 0.92344 0.87852 0.85771 0.85804 0.90369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 10.29 71.98 0.74 -1.12 16 2 C 0.05 0.98 6.19 71.98 0.45 1.42 16 3 O -0.37 -7.99 10.22 -51.38 -0.53 -8.51 16 4 C 0.47 10.45 7.73 71.24 0.55 11.00 16 5 O -0.52 -13.29 14.68 21.98 0.32 -12.97 16 6 C -0.12 -2.32 5.15 29.85 0.15 -2.16 16 7 C 0.11 2.39 0.31 4.31 0.00 2.39 16 8 N -0.70 -18.64 4.23 -453.35 -1.92 -20.56 16 9 C 0.52 18.20 7.40 87.66 0.65 18.85 16 10 O -0.57 -22.73 13.98 -3.02 -0.04 -22.77 16 11 C -0.12 -4.65 5.64 29.85 0.17 -4.49 16 12 C 0.01 0.48 3.33 29.85 0.10 0.58 16 13 C -0.53 -31.22 9.66 25.60 0.25 -30.97 16 14 H 0.04 2.81 7.99 -2.91 -0.02 2.79 16 15 C 0.01 0.79 5.47 84.65 0.46 1.25 16 16 N -0.94 -59.76 13.96 21.44 0.30 -59.46 16 17 Si 0.94 46.66 27.47 68.60 1.88 48.55 16 18 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 19 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 20 H -0.26 -12.54 6.54 99.48 0.65 -11.89 16 21 C 0.05 0.91 7.94 72.28 0.57 1.48 16 22 O -0.40 -9.09 12.45 -148.98 -1.86 -10.95 16 23 C 0.04 0.93 8.06 72.28 0.58 1.51 16 24 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.08 1.23 8.13 -2.39 -0.02 1.21 16 28 H 0.06 1.19 8.13 -2.39 -0.02 1.17 16 29 H 0.11 2.46 7.19 -2.39 -0.02 2.44 16 30 H 0.16 1.56 8.13 -2.39 -0.02 1.54 16 31 H 0.42 9.91 8.67 -92.70 -0.80 9.11 16 32 H 0.10 3.59 8.14 -2.39 -0.02 3.57 16 33 H 0.09 3.47 8.14 -2.39 -0.02 3.45 16 34 H 0.01 0.74 7.16 -2.39 -0.02 0.73 16 35 H 0.01 0.55 7.53 -2.39 -0.02 0.53 16 36 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 37 H 0.10 1.70 8.09 -2.39 -0.02 1.68 16 38 H 0.12 1.27 8.09 -2.38 -0.02 1.25 16 39 H 0.12 1.78 8.10 -2.39 -0.02 1.76 16 40 H 0.08 2.14 7.31 -2.39 -0.02 2.12 16 Total: -1.00 -75.63 338.45 3.03 -72.61 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: 0.18 Total: 14.33 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: 4.68 Total: -0.26 kcal Atomic # 7 Polarization: -78.40 SS G_CDS: -1.62 Total: -80.02 kcal Atomic # 8 Polarization: -53.10 SS G_CDS: -2.10 Total: -55.20 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 1.88 Total: 48.55 kcal Total: -75.63 3.03 -72.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120788727.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.391 kcal (2) G-P(sol) polarization free energy of solvation -75.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds