Wall clock time and date at job start Tue Mar 31 2020 05:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53009 * 109.47140 * 2 1 4 4 N 1.46898 * 109.47253 * 184.99943 * 3 2 1 5 5 C 1.46897 * 111.00162 * 301.22798 * 4 3 2 6 6 C 1.50703 * 109.47070 * 289.10824 * 5 4 3 7 7 H 1.08007 * 119.99764 * 4.82079 * 6 5 4 8 8 C 1.37873 * 119.99973 * 184.82758 * 6 5 4 9 9 N 1.31516 * 120.00111 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99802 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47278 * 60.00146 * 10 8 6 12 12 H 1.48504 * 109.47255 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47268 * 299.99734 * 10 8 6 14 14 C 1.46906 * 110.99595 * 65.17684 * 4 3 2 15 15 C 1.50703 * 109.46730 * 74.90820 * 14 4 3 16 16 C 1.39860 * 126.04828 * 262.31535 * 15 14 4 17 17 C 1.50701 * 125.88938 * 359.97438 * 16 15 14 18 18 N 1.30837 * 108.22072 * 180.02562 * 16 15 14 19 19 N 1.40078 * 108.23496 * 359.74239 * 18 16 15 20 20 C 1.46503 * 126.03807 * 180.28965 * 19 18 16 21 21 C 1.34983 * 107.92707 * 0.42469 * 19 18 16 22 22 Cl 1.73606 * 126.14211 * 179.84416 * 21 19 18 23 23 H 1.08993 * 109.47087 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.47154 * 300.00049 * 1 2 3 25 25 H 1.08998 * 109.47151 * 59.99743 * 1 2 3 26 26 H 1.08997 * 109.47593 * 240.00063 * 2 1 3 27 27 H 1.09004 * 109.47269 * 119.99555 * 2 1 3 28 28 H 1.08997 * 109.46905 * 65.00173 * 3 2 1 29 29 H 1.09001 * 109.47238 * 305.00287 * 3 2 1 30 30 H 1.09004 * 109.47287 * 49.10265 * 5 4 3 31 31 H 1.09000 * 109.47016 * 169.10470 * 5 4 3 32 32 H 0.96999 * 119.99925 * 180.02562 * 9 8 6 33 33 H 1.08995 * 109.47479 * 314.90264 * 14 4 3 34 34 H 1.09002 * 109.46927 * 194.90216 * 14 4 3 35 35 H 1.09000 * 109.46975 * 94.75232 * 17 16 15 36 36 H 1.09004 * 109.47315 * 214.74752 * 17 16 15 37 37 H 1.08994 * 109.47369 * 334.74933 * 17 16 15 38 38 H 1.08997 * 109.46928 * 270.15790 * 20 19 18 39 39 H 1.08998 * 109.46698 * 30.16107 * 20 19 18 40 40 H 1.09001 * 109.46965 * 150.15998 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5040 1.4444 -0.1207 5 6 4.1242 0.7003 0.9836 6 6 3.9737 1.4821 2.2632 7 1 3.4011 2.3978 2.2723 8 6 4.5671 1.0284 3.4221 9 7 5.2640 -0.0868 3.4110 10 14 4.3811 1.9979 5.0079 11 1 2.9418 2.1018 5.3587 12 1 5.1075 1.3031 6.1010 13 1 4.9455 3.3593 4.8250 14 6 3.9256 0.9056 -1.4207 15 6 3.6698 1.9302 -2.4959 16 6 2.5591 1.9726 -3.3447 17 6 1.4084 0.9995 -3.3433 18 7 2.6918 3.0023 -4.1410 19 7 3.8902 3.6529 -3.8202 20 6 4.4172 4.8569 -4.4673 21 6 4.4750 2.9727 -2.8115 22 17 5.9846 3.3675 -2.0504 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.7517 1.9298 0.9314 29 1 1.6053 1.9817 -0.8418 30 1 3.6345 -0.2678 1.0897 31 1 5.1829 0.5507 0.7715 32 1 5.6811 -0.4061 4.2264 33 1 3.3598 0.0001 -1.6396 34 1 4.9895 0.6705 -1.3888 35 1 0.5991 1.3946 -2.7293 36 1 1.0531 0.8554 -4.3637 37 1 1.7406 0.0446 -2.9361 38 1 5.0456 4.5706 -5.3106 39 1 3.5893 5.4703 -4.8227 40 1 5.0090 5.4255 -3.7499 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137749126.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:00 Heat of formation + Delta-G solvation = 69.062613 kcal Electronic energy + Delta-G solvation = -21191.581271 eV Core-core repulsion = 18069.047521 eV Total energy + Delta-G solvation = -3122.533749 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.19672 -37.39289 -36.56039 -33.92857 -32.76139 -32.17349 -30.25365 -29.54430 -27.15237 -26.27508 -24.93682 -23.36279 -22.07447 -20.66003 -19.84229 -18.91065 -16.74122 -16.10163 -15.82472 -15.17105 -14.80193 -14.54028 -14.17956 -13.71437 -13.51021 -13.27366 -13.21111 -12.74534 -12.49248 -12.48691 -12.20215 -12.05589 -11.57132 -11.46846 -11.30456 -11.16750 -10.91590 -10.90134 -10.77085 -10.66901 -10.42064 -10.29803 -9.82233 -9.61049 -9.16891 -8.95927 -8.35675 -8.13989 -7.02382 -5.94875 -3.94552 1.71171 1.83480 2.78169 2.80220 3.37524 3.41380 3.44829 4.44750 4.49627 5.00958 5.05129 5.15324 5.24676 5.29797 5.39926 5.47700 5.55909 5.61071 5.67891 5.69904 5.88245 5.96191 6.06539 6.14528 6.20486 6.30647 6.44229 6.47409 6.54440 6.75493 6.82037 6.84189 7.02694 7.39807 7.48904 7.71542 7.89987 8.20712 8.35244 8.66081 9.12445 9.68591 11.15662 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.015755 B = 0.005879 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.769262 B = 4761.436824 C = 5990.226739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.164 4.164 3 C 0.069 3.931 4 N -0.526 5.526 5 C 0.190 3.810 6 C -0.497 4.497 7 H 0.060 0.940 8 C 0.055 3.945 9 N -0.901 5.901 10 Si 0.893 3.107 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.278 1.278 14 C 0.122 3.878 15 C -0.185 4.185 16 C 0.087 3.913 17 C -0.073 4.073 18 N -0.286 5.286 19 N -0.376 5.376 20 C 0.101 3.899 21 C 0.137 3.863 22 Cl 0.003 6.997 23 H 0.045 0.955 24 H 0.052 0.948 25 H 0.046 0.954 26 H 0.054 0.946 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.052 0.948 30 H -0.003 1.003 31 H 0.029 0.971 32 H 0.260 0.740 33 H 0.042 0.958 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.090 0.910 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.936 4.476 -14.919 16.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.203 4.203 3 C -0.060 4.060 4 N -0.248 5.248 5 C 0.065 3.935 6 C -0.536 4.536 7 H 0.078 0.922 8 C -0.145 4.145 9 N -0.541 5.541 10 Si 0.722 3.278 11 H -0.204 1.204 12 H -0.215 1.215 13 H -0.203 1.203 14 C -0.007 4.007 15 C -0.197 4.197 16 C -0.079 4.079 17 C -0.132 4.132 18 N -0.110 5.110 19 N -0.161 5.161 20 C -0.040 4.040 21 C -0.016 4.016 22 Cl 0.031 6.969 23 H 0.064 0.936 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.070 0.930 30 H 0.015 0.985 31 H 0.047 0.953 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.109 0.891 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.942 5.692 -15.702 17.161 hybrid contribution 0.368 -0.539 1.603 1.731 sum -3.574 5.153 -14.099 15.431 Atomic orbital electron populations 1.21681 0.96631 1.00641 1.01166 1.22210 0.95285 1.00564 1.02272 1.22021 0.88622 0.94148 1.01203 1.62308 1.06446 1.55107 1.00989 1.19808 0.94274 0.91912 0.87498 1.21102 1.31549 1.08349 0.92614 0.92196 1.24939 0.95505 0.95182 0.98921 1.69943 1.34575 1.21461 1.28084 0.86637 0.78087 0.80133 0.82972 1.20394 1.21490 1.20334 1.20393 1.00458 0.91931 0.87959 1.19713 0.95566 1.00992 1.03449 1.22095 0.96592 0.95273 0.93923 1.20287 0.93792 0.96324 1.02754 1.77362 0.99500 1.10061 1.24109 1.48362 1.16731 1.23254 1.27733 1.21843 1.00033 0.83889 0.98244 1.21419 0.91488 0.95642 0.93059 1.98416 1.26314 1.93474 1.78726 0.93610 0.92926 0.93457 0.92739 0.90644 0.90779 0.92995 0.98487 0.95255 0.93048 0.94057 0.90833 0.90191 0.91092 0.90122 0.90784 0.89096 0.89473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.91 37.16 0.37 -1.62 16 2 C -0.16 -2.78 5.26 -26.73 -0.14 -2.92 16 3 C 0.07 1.30 5.08 -3.82 -0.02 1.28 16 4 N -0.53 -11.07 4.59 -237.51 -1.09 -12.16 16 5 C 0.19 4.79 4.54 -4.98 -0.02 4.77 16 6 C -0.50 -13.79 8.67 -34.44 -0.30 -14.09 16 7 H 0.06 1.67 7.26 -52.48 -0.38 1.29 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -26.56 13.29 55.43 0.74 -25.82 16 10 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 14 C 0.12 2.22 5.02 -4.97 -0.02 2.19 16 15 C -0.18 -3.12 5.06 -105.01 -0.53 -3.65 16 16 C 0.09 1.34 6.63 -82.41 -0.55 0.80 16 17 C -0.07 -0.89 9.73 36.01 0.35 -0.54 16 18 N -0.29 -4.50 12.57 33.67 0.42 -4.08 16 19 N -0.38 -5.49 4.01 -64.90 -0.26 -5.76 16 20 C 0.10 0.99 11.31 59.85 0.68 1.67 16 21 C 0.14 2.22 7.45 -17.16 -0.13 2.09 16 22 Cl 0.00 0.04 28.53 -51.86 -1.48 -1.44 16 23 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.05 0.75 8.14 -51.92 -0.42 0.32 16 25 H 0.05 0.57 7.60 -51.93 -0.39 0.18 16 26 H 0.05 0.86 5.11 -51.93 -0.27 0.60 16 27 H 0.07 1.51 6.43 -51.93 -0.33 1.17 16 28 H 0.07 1.55 7.13 -51.93 -0.37 1.18 16 29 H 0.05 0.91 5.87 -51.93 -0.30 0.61 16 30 H 0.00 -0.07 5.85 -51.93 -0.30 -0.37 16 31 H 0.03 0.81 7.72 -51.93 -0.40 0.41 16 32 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.04 0.70 4.73 -51.93 -0.25 0.46 16 34 H 0.07 1.40 7.68 -51.93 -0.40 1.00 16 35 H 0.08 0.93 7.10 -51.93 -0.37 0.56 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 0.94 6.05 -51.93 -0.31 0.63 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.09 0.76 7.80 -51.93 -0.41 0.36 16 LS Contribution 333.33 15.07 5.02 5.02 Total: -1.00 -31.04 333.33 -7.82 -38.86 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -5.74 Total: -2.83 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: -0.41 Total: -8.55 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: -0.19 Total: -47.82 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 17 Polarization: 0.04 SS G_CDS: -1.48 Total: -1.44 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.04 -7.82 -38.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137749126.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.921 kcal (2) G-P(sol) polarization free energy of solvation -31.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds