Wall clock time and date at job start Tue Mar 31 2020 05:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53009 * 109.47140 * 2 1 4 4 N 1.46898 * 109.47253 * 184.99943 * 3 2 1 5 5 C 1.46897 * 111.00162 * 301.22798 * 4 3 2 6 6 C 1.50703 * 109.47070 * 289.10824 * 5 4 3 7 7 H 1.08007 * 119.99764 * 4.82079 * 6 5 4 8 8 C 1.37873 * 119.99973 * 184.82758 * 6 5 4 9 9 N 1.31516 * 120.00111 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99802 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47278 * 60.00146 * 10 8 6 12 12 H 1.48504 * 109.47255 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47268 * 299.99734 * 10 8 6 14 14 C 1.46906 * 110.99595 * 65.17684 * 4 3 2 15 15 C 1.50703 * 109.46730 * 74.90820 * 14 4 3 16 16 C 1.39860 * 126.04828 * 262.31535 * 15 14 4 17 17 C 1.50701 * 125.88938 * 359.97438 * 16 15 14 18 18 N 1.30837 * 108.22072 * 180.02562 * 16 15 14 19 19 N 1.40078 * 108.23496 * 359.74239 * 18 16 15 20 20 C 1.46503 * 126.03807 * 180.28965 * 19 18 16 21 21 C 1.34983 * 107.92707 * 0.42469 * 19 18 16 22 22 Cl 1.73606 * 126.14211 * 179.84416 * 21 19 18 23 23 H 1.08993 * 109.47087 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.47154 * 300.00049 * 1 2 3 25 25 H 1.08998 * 109.47151 * 59.99743 * 1 2 3 26 26 H 1.08997 * 109.47593 * 240.00063 * 2 1 3 27 27 H 1.09004 * 109.47269 * 119.99555 * 2 1 3 28 28 H 1.08997 * 109.46905 * 65.00173 * 3 2 1 29 29 H 1.09001 * 109.47238 * 305.00287 * 3 2 1 30 30 H 1.09004 * 109.47287 * 49.10265 * 5 4 3 31 31 H 1.09000 * 109.47016 * 169.10470 * 5 4 3 32 32 H 0.96999 * 119.99925 * 180.02562 * 9 8 6 33 33 H 1.08995 * 109.47479 * 314.90264 * 14 4 3 34 34 H 1.09002 * 109.46927 * 194.90216 * 14 4 3 35 35 H 1.09000 * 109.46975 * 94.75232 * 17 16 15 36 36 H 1.09004 * 109.47315 * 214.74752 * 17 16 15 37 37 H 1.08994 * 109.47369 * 334.74933 * 17 16 15 38 38 H 1.08997 * 109.46928 * 270.15790 * 20 19 18 39 39 H 1.08998 * 109.46698 * 30.16107 * 20 19 18 40 40 H 1.09001 * 109.46965 * 150.15998 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5040 1.4444 -0.1207 5 6 4.1242 0.7003 0.9836 6 6 3.9737 1.4821 2.2632 7 1 3.4011 2.3978 2.2723 8 6 4.5671 1.0284 3.4221 9 7 5.2640 -0.0868 3.4110 10 14 4.3811 1.9979 5.0079 11 1 2.9418 2.1018 5.3587 12 1 5.1075 1.3031 6.1010 13 1 4.9455 3.3593 4.8250 14 6 3.9256 0.9056 -1.4207 15 6 3.6698 1.9302 -2.4959 16 6 2.5591 1.9726 -3.3447 17 6 1.4084 0.9995 -3.3433 18 7 2.6918 3.0023 -4.1410 19 7 3.8902 3.6529 -3.8202 20 6 4.4172 4.8569 -4.4673 21 6 4.4750 2.9727 -2.8115 22 17 5.9846 3.3675 -2.0504 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.7517 1.9298 0.9314 29 1 1.6053 1.9817 -0.8418 30 1 3.6345 -0.2678 1.0897 31 1 5.1829 0.5507 0.7715 32 1 5.6811 -0.4061 4.2264 33 1 3.3598 0.0001 -1.6396 34 1 4.9895 0.6705 -1.3888 35 1 0.5991 1.3946 -2.7293 36 1 1.0531 0.8554 -4.3637 37 1 1.7406 0.0446 -2.9361 38 1 5.0456 4.5706 -5.3106 39 1 3.5893 5.4703 -4.8227 40 1 5.0090 5.4255 -3.7499 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137749126.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:00 Heat of formation + Delta-G solvation = 49.541760 kcal Electronic energy + Delta-G solvation = -21192.427758 eV Core-core repulsion = 18069.047521 eV Total energy + Delta-G solvation = -3123.380237 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.130 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.38004 -38.99085 -37.80048 -35.14077 -34.63940 -33.63675 -31.64835 -30.54863 -28.93848 -27.62336 -26.24993 -24.95499 -23.64207 -21.96625 -21.15728 -20.32054 -18.32410 -17.77513 -17.09499 -16.71586 -16.33060 -16.10967 -15.57536 -15.11344 -14.92575 -14.42141 -14.32138 -14.11094 -13.90896 -13.53449 -13.39417 -13.21108 -13.07723 -12.83487 -12.73357 -12.61972 -12.59432 -12.46071 -12.28654 -12.22933 -12.11316 -11.70983 -11.52233 -11.27050 -11.10171 -10.51338 -10.08471 -9.40582 -8.72635 -8.11404 -6.19282 0.50102 0.63456 1.42048 1.44397 1.51714 1.57481 1.74592 2.44964 3.20000 3.41021 3.60731 4.01648 4.09987 4.22942 4.30072 4.32529 4.34951 4.41245 4.58731 4.59467 4.69654 4.77802 4.86112 4.92673 5.00332 5.02810 5.04659 5.16368 5.26182 5.28540 5.43370 5.52731 5.56047 5.64146 5.75545 5.77826 6.18269 6.52035 6.57499 6.78258 6.96393 7.48794 8.98086 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.015755 B = 0.005879 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.769262 B = 4761.436824 C = 5990.226739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.155 4.155 3 C 0.074 3.926 4 N -0.535 5.535 5 C 0.208 3.792 6 C -0.510 4.510 7 H 0.054 0.946 8 C 0.005 3.995 9 N -0.933 5.933 10 Si 0.958 3.042 11 H -0.269 1.269 12 H -0.284 1.284 13 H -0.273 1.273 14 C 0.130 3.870 15 C -0.208 4.208 16 C 0.086 3.914 17 C -0.074 4.074 18 N -0.297 5.297 19 N -0.372 5.372 20 C 0.090 3.910 21 C 0.129 3.871 22 Cl 0.001 6.999 23 H 0.060 0.940 24 H 0.045 0.955 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.037 0.963 28 H 0.048 0.952 29 H 0.071 0.929 30 H -0.019 1.019 31 H -0.002 1.002 32 H 0.262 0.738 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.107 0.893 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.311 5.398 -15.965 17.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.194 4.194 3 C -0.054 4.054 4 N -0.258 5.258 5 C 0.082 3.918 6 C -0.549 4.549 7 H 0.073 0.927 8 C -0.193 4.193 9 N -0.574 5.574 10 Si 0.784 3.216 11 H -0.194 1.194 12 H -0.209 1.209 13 H -0.198 1.198 14 C 0.001 3.999 15 C -0.221 4.221 16 C -0.079 4.079 17 C -0.132 4.132 18 N -0.121 5.121 19 N -0.157 5.157 20 C -0.050 4.050 21 C -0.025 4.025 22 Cl 0.029 6.971 23 H 0.079 0.921 24 H 0.064 0.936 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.090 0.910 30 H -0.001 1.001 31 H 0.016 0.984 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.102 0.898 38 H 0.112 0.888 39 H 0.125 0.875 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.331 6.638 -16.780 18.816 hybrid contribution 0.829 -0.780 1.832 2.157 sum -4.503 5.858 -14.948 16.674 Atomic orbital electron populations 1.21639 0.93823 1.01975 1.02059 1.22071 0.97693 0.98621 1.00995 1.21966 0.87300 0.95500 1.00607 1.62188 1.07803 1.54717 1.01094 1.19407 0.92537 0.91365 0.88446 1.21385 1.31305 1.08250 0.93923 0.92747 1.25753 0.95151 0.96103 1.02284 1.70065 1.35442 1.22940 1.28999 0.85611 0.78433 0.78701 0.78901 1.19444 1.20949 1.19849 1.20258 0.99599 0.93042 0.86960 1.19636 0.97052 1.01409 1.03973 1.22498 0.96810 0.95558 0.93065 1.20414 0.92856 0.95619 1.04284 1.77336 1.00039 1.10338 1.24397 1.48725 1.16153 1.23757 1.27064 1.22240 1.01099 0.82668 0.98966 1.21538 0.91489 0.95913 0.93541 1.98413 1.26353 1.93460 1.78827 0.92096 0.93582 0.91006 0.91454 0.94423 0.93321 0.91037 1.00134 0.98351 0.92954 0.92807 0.92443 0.89340 0.89146 0.89763 0.88755 0.87453 0.88541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 9.91 71.98 0.71 -2.80 16 2 C -0.15 -5.16 5.26 30.60 0.16 -5.00 16 3 C 0.07 2.80 5.08 86.31 0.44 3.23 16 4 N -0.54 -22.92 4.59 -905.34 -4.16 -27.08 16 5 C 0.21 10.93 4.54 85.56 0.39 11.32 16 6 C -0.51 -28.98 8.67 25.60 0.22 -28.76 16 7 H 0.05 3.09 7.26 -2.91 -0.02 3.07 16 8 C 0.00 0.27 5.46 84.65 0.46 0.73 16 9 N -0.93 -56.25 13.29 21.45 0.28 -55.96 16 10 Si 0.96 44.98 29.54 68.60 2.03 47.01 16 11 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 13 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 14 C 0.13 4.77 5.02 85.56 0.43 5.20 16 15 C -0.21 -6.85 5.06 -20.11 -0.10 -6.95 16 16 C 0.09 2.49 6.63 43.10 0.29 2.77 16 17 C -0.07 -1.57 9.73 71.24 0.69 -0.88 16 18 N -0.30 -8.70 12.57 -47.39 -0.60 -9.29 16 19 N -0.37 -10.23 4.01 -359.26 -1.44 -11.67 16 20 C 0.09 1.56 11.31 127.77 1.44 3.01 16 21 C 0.13 4.09 7.45 83.57 0.62 4.72 16 22 Cl 0.00 0.04 28.53 -2.72 -0.08 -0.03 16 23 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.05 1.23 8.14 -2.38 -0.02 1.22 16 25 H 0.07 1.50 7.60 -2.39 -0.02 1.48 16 26 H 0.07 2.05 5.11 -2.39 -0.01 2.04 16 27 H 0.04 1.54 6.43 -2.39 -0.02 1.52 16 28 H 0.05 2.06 7.13 -2.39 -0.02 2.04 16 29 H 0.07 2.41 5.87 -2.39 -0.01 2.39 16 30 H -0.02 -1.04 5.85 -2.38 -0.01 -1.05 16 31 H 0.00 -0.10 7.72 -2.39 -0.02 -0.11 16 32 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 33 H 0.05 1.81 4.73 -2.39 -0.01 1.80 16 34 H 0.06 2.26 7.68 -2.39 -0.02 2.24 16 35 H 0.09 1.76 7.10 -2.39 -0.02 1.74 16 36 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 37 H 0.08 1.74 6.05 -2.39 -0.01 1.72 16 38 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.10 1.50 7.80 -2.39 -0.02 1.48 16 Total: -1.00 -67.46 333.33 2.84 -64.62 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: 1.04 Total: 5.82 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: 5.76 Total: -13.41 kcal Atomic # 7 Polarization: -98.09 SS G_CDS: -5.91 Total: -104.00 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Atomic # 17 Polarization: 0.04 SS G_CDS: -0.08 Total: -0.03 kcal Total: -67.46 2.84 -64.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137749126.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.161 kcal (2) G-P(sol) polarization free energy of solvation -67.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds