Wall clock time and date at job start Tue Mar 31 2020 05:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46632 * 2 1 4 4 C 1.53001 * 109.47091 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47209 * 180.02562 * 4 3 2 6 6 C 1.36934 * 120.00056 * 270.00301 * 5 4 3 7 7 H 1.08005 * 119.99927 * 321.68360 * 6 5 4 8 8 C 1.38819 * 120.00107 * 141.68972 * 6 5 4 9 9 N 1.31610 * 119.99828 * 340.28757 * 8 6 5 10 10 Si 1.86797 * 119.99856 * 160.29475 * 8 6 5 11 11 H 1.48497 * 109.47380 * 89.99421 * 10 8 6 12 12 H 1.48499 * 109.47134 * 209.99494 * 10 8 6 13 13 H 1.48506 * 109.47278 * 329.99733 * 10 8 6 14 14 C 1.46507 * 120.00206 * 89.99759 * 5 4 3 15 15 C 1.50704 * 109.46504 * 84.33024 * 14 5 4 16 16 C 1.39865 * 126.04919 * 266.08211 * 15 14 5 17 17 C 1.50699 * 125.89093 * 0.02562 * 16 15 14 18 18 N 1.30837 * 108.21709 * 179.81932 * 16 15 14 19 19 N 1.40085 * 108.23644 * 0.44621 * 18 16 15 20 20 C 1.46495 * 126.03389 * 179.74958 * 19 18 16 21 21 C 1.34986 * 107.92812 * 359.71696 * 19 18 16 22 22 Cl 1.73593 * 126.14057 * 179.97438 * 21 19 18 23 23 H 1.08996 * 109.47493 * 299.99945 * 1 2 3 24 24 H 1.08999 * 109.47110 * 60.00443 * 1 2 3 25 25 H 1.09004 * 109.46727 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47053 * 240.00291 * 2 1 3 27 27 H 1.08999 * 109.47110 * 119.99557 * 2 1 3 28 28 H 1.09008 * 109.47006 * 60.00181 * 3 2 1 29 29 H 1.09002 * 109.47515 * 300.00173 * 3 2 1 30 30 H 1.08996 * 109.47092 * 60.00018 * 4 3 2 31 31 H 1.09004 * 109.46829 * 300.00230 * 4 3 2 32 32 H 0.97002 * 119.99760 * 185.02679 * 9 8 6 33 33 H 1.08993 * 109.47287 * 204.32722 * 14 5 4 34 34 H 1.09000 * 109.46982 * 324.33278 * 14 5 4 35 35 H 1.09004 * 109.47266 * 89.99572 * 17 16 15 36 36 H 1.09001 * 109.47149 * 209.99342 * 17 16 15 37 37 H 1.08997 * 109.47472 * 329.99457 * 17 16 15 38 38 H 1.09004 * 109.47250 * 269.95315 * 20 19 18 39 39 H 1.08994 * 109.47427 * 29.95782 * 20 19 18 40 40 H 1.09009 * 109.47030 * 149.95852 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4427 0.0006 5 7 4.0582 2.8239 0.0013 6 6 4.2868 3.4698 -1.1843 7 1 4.7121 2.9321 -2.0189 8 6 3.9721 4.8157 -1.3135 9 7 3.1225 5.3758 -0.4789 10 14 4.7544 5.8315 -2.6719 11 1 3.9039 5.7712 -3.8876 12 1 4.8801 7.2422 -2.2252 13 1 6.1014 5.2888 -2.9828 14 6 4.3017 3.5142 1.2703 15 6 5.6778 3.1650 1.7760 16 6 5.9887 2.1395 2.6749 17 6 5.0038 1.1898 3.3067 18 7 7.2825 2.1441 2.8691 19 7 7.8365 3.1807 2.1069 20 6 9.2558 3.5373 2.0396 21 6 6.8317 3.7926 1.4450 22 17 6.9899 5.1418 0.3642 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6766 1.9564 0.8901 29 1 1.6766 1.9564 -0.8900 30 1 3.9337 0.9288 -0.8891 31 1 3.9329 0.9289 0.8909 32 1 2.8466 6.2961 -0.6126 33 1 4.2335 4.5911 1.1171 34 1 3.5560 3.2033 2.0020 35 1 4.8901 0.3099 2.6735 36 1 5.3696 0.8867 4.2877 37 1 4.0394 1.6859 3.4159 38 1 9.4826 4.2731 2.8111 39 1 9.8624 2.6457 2.1983 40 1 9.4785 3.9585 1.0591 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137750109.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:53 Heat of formation + Delta-G solvation = 75.285890 kcal Electronic energy + Delta-G solvation = -21366.515199 eV Core-core repulsion = 18244.251311 eV Total energy + Delta-G solvation = -3122.263888 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.130 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.70424 -36.23478 -36.07420 -34.08563 -33.36332 -31.19228 -30.12766 -29.18092 -27.67958 -26.00314 -24.35625 -23.41398 -21.10695 -20.32430 -19.72530 -19.05172 -16.82441 -16.06049 -15.34711 -14.76838 -14.67833 -14.29319 -13.71833 -13.55359 -13.34676 -13.09819 -12.94626 -12.64673 -12.27418 -12.07213 -11.97841 -11.85591 -11.78803 -11.32338 -11.12551 -10.85353 -10.79480 -10.62528 -10.48072 -10.36896 -10.23049 -10.10958 -9.82843 -9.65158 -9.50936 -8.57101 -8.38895 -7.66207 -6.42682 -5.73973 -3.23009 2.15043 2.24385 3.17950 3.26647 3.38044 3.44223 3.47206 4.54533 4.79070 5.29315 5.34444 5.39626 5.49109 5.51328 5.52891 5.57370 5.73572 5.88719 5.97378 6.03347 6.12854 6.17679 6.27540 6.32550 6.46720 6.51082 6.53269 6.59402 6.76382 6.81781 7.04191 7.18633 7.23701 7.28784 7.41135 7.73764 7.92373 8.12507 8.64355 9.29597 9.92106 10.51775 11.31586 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.012074 B = 0.008614 C = 0.005402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.514698 B = 3249.662531 C = 5182.441516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.132 4.132 4 C 0.149 3.851 5 N -0.574 5.574 6 C -0.248 4.248 7 H 0.053 0.947 8 C 0.030 3.970 9 N -0.887 5.887 10 Si 0.870 3.130 11 H -0.286 1.286 12 H -0.288 1.288 13 H -0.275 1.275 14 C 0.215 3.785 15 C -0.196 4.196 16 C 0.077 3.923 17 C -0.067 4.067 18 N -0.295 5.295 19 N -0.383 5.383 20 C 0.104 3.896 21 C 0.126 3.874 22 Cl -0.002 7.002 23 H 0.050 0.950 24 H 0.051 0.949 25 H 0.042 0.958 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.036 0.964 31 H 0.034 0.966 32 H 0.254 0.746 33 H 0.105 0.895 34 H 0.033 0.967 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.680 -5.200 5.568 8.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.172 4.172 4 C 0.023 3.977 5 N -0.292 5.292 6 C -0.378 4.378 7 H 0.071 0.929 8 C -0.170 4.170 9 N -0.530 5.530 10 Si 0.700 3.300 11 H -0.213 1.213 12 H -0.214 1.214 13 H -0.200 1.200 14 C 0.087 3.913 15 C -0.210 4.210 16 C -0.089 4.089 17 C -0.125 4.125 18 N -0.120 5.120 19 N -0.170 5.170 20 C -0.038 4.038 21 C -0.025 4.025 22 Cl 0.026 6.974 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.123 0.877 34 H 0.052 0.948 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.104 0.896 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.794 -5.371 6.073 9.965 hybrid contribution -0.003 1.237 -1.428 1.889 sum 5.792 -4.134 4.645 8.498 Atomic orbital electron populations 1.21759 0.96914 1.00265 1.01646 1.21537 0.94976 0.98844 1.00758 1.22157 0.99256 0.93673 1.02132 1.20923 0.91232 0.87513 0.98045 1.43711 1.73745 1.10014 1.01765 1.18878 1.35295 0.92425 0.91212 0.92927 1.24967 0.96672 0.98514 0.96856 1.69857 1.31600 1.13684 1.37823 0.86772 0.80327 0.80235 0.82714 1.21256 1.21442 1.20035 1.19328 0.85047 1.01052 0.85850 1.21236 0.98807 0.98575 1.02369 1.22108 0.91880 0.97270 0.97600 1.20152 0.96148 0.96795 0.99435 1.77243 1.09733 1.07313 1.17685 1.48346 1.06308 1.25762 1.36564 1.21733 0.77240 1.01763 1.03020 1.21428 0.89709 0.94357 0.97024 1.98392 1.97637 1.40577 1.60803 0.93101 0.93010 0.93861 0.92881 0.93004 0.93004 0.91910 0.94541 0.94807 0.93571 0.87723 0.94831 0.90669 0.91590 0.90192 0.91206 0.89551 0.89901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 37.16 0.37 -1.66 16 2 C -0.12 -1.87 5.93 -26.73 -0.16 -2.03 16 3 C -0.13 -2.52 5.54 -26.73 -0.15 -2.67 16 4 C 0.15 3.07 5.69 -4.04 -0.02 3.05 16 5 N -0.57 -13.69 2.41 -174.61 -0.42 -14.11 16 6 C -0.25 -6.53 9.46 -15.06 -0.14 -6.67 16 7 H 0.05 1.44 7.90 -52.48 -0.41 1.02 16 8 C 0.03 0.80 4.93 -17.43 -0.09 0.71 16 9 N -0.89 -24.42 11.50 55.49 0.64 -23.78 16 10 Si 0.87 21.28 29.50 -169.99 -5.01 16.27 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 C 0.21 4.93 5.35 -5.19 -0.03 4.90 16 15 C -0.20 -4.13 5.68 -105.00 -0.60 -4.73 16 16 C 0.08 1.46 7.22 -82.41 -0.59 0.86 16 17 C -0.07 -0.99 9.53 36.01 0.34 -0.64 16 18 N -0.30 -5.59 12.57 33.67 0.42 -5.16 16 19 N -0.38 -6.96 4.01 -64.91 -0.26 -7.22 16 20 C 0.10 1.35 11.31 59.84 0.68 2.03 16 21 C 0.13 2.58 7.45 -17.16 -0.13 2.46 16 22 Cl 0.00 -0.04 28.32 -51.86 -1.47 -1.51 16 23 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.05 1.03 8.14 -51.92 -0.42 0.61 16 29 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 30 H 0.04 0.77 8.04 -51.93 -0.42 0.35 16 31 H 0.03 0.64 6.45 -51.93 -0.34 0.30 16 32 H 0.25 6.86 8.32 -40.82 -0.34 6.52 16 33 H 0.11 2.71 5.47 -51.93 -0.28 2.43 16 34 H 0.03 0.74 7.12 -51.93 -0.37 0.37 16 35 H 0.07 1.05 7.34 -51.93 -0.38 0.67 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.08 1.14 7.19 -51.93 -0.37 0.77 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.08 0.99 7.81 -51.92 -0.41 0.59 16 LS Contribution 344.68 15.07 5.19 5.19 Total: -1.00 -29.29 344.68 -7.77 -37.06 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -6.34 Total: -2.33 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: -0.52 Total: -4.40 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: 0.38 Total: -50.28 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.01 Total: 16.27 kcal Atomic # 17 Polarization: -0.04 SS G_CDS: -1.47 Total: -1.51 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.29 -7.77 -37.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137750109.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.342 kcal (2) G-P(sol) polarization free energy of solvation -29.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds