Wall clock time and date at job start Tue Mar 31 2020 05:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46632 * 2 1 4 4 C 1.53001 * 109.47091 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47209 * 180.02562 * 4 3 2 6 6 C 1.36934 * 120.00056 * 270.00301 * 5 4 3 7 7 H 1.08005 * 119.99927 * 321.68360 * 6 5 4 8 8 C 1.38819 * 120.00107 * 141.68972 * 6 5 4 9 9 N 1.31610 * 119.99828 * 340.28757 * 8 6 5 10 10 Si 1.86797 * 119.99856 * 160.29475 * 8 6 5 11 11 H 1.48497 * 109.47380 * 89.99421 * 10 8 6 12 12 H 1.48499 * 109.47134 * 209.99494 * 10 8 6 13 13 H 1.48506 * 109.47278 * 329.99733 * 10 8 6 14 14 C 1.46507 * 120.00206 * 89.99759 * 5 4 3 15 15 C 1.50704 * 109.46504 * 84.33024 * 14 5 4 16 16 C 1.39865 * 126.04919 * 266.08211 * 15 14 5 17 17 C 1.50699 * 125.89093 * 0.02562 * 16 15 14 18 18 N 1.30837 * 108.21709 * 179.81932 * 16 15 14 19 19 N 1.40085 * 108.23644 * 0.44621 * 18 16 15 20 20 C 1.46495 * 126.03389 * 179.74958 * 19 18 16 21 21 C 1.34986 * 107.92812 * 359.71696 * 19 18 16 22 22 Cl 1.73593 * 126.14057 * 179.97438 * 21 19 18 23 23 H 1.08996 * 109.47493 * 299.99945 * 1 2 3 24 24 H 1.08999 * 109.47110 * 60.00443 * 1 2 3 25 25 H 1.09004 * 109.46727 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47053 * 240.00291 * 2 1 3 27 27 H 1.08999 * 109.47110 * 119.99557 * 2 1 3 28 28 H 1.09008 * 109.47006 * 60.00181 * 3 2 1 29 29 H 1.09002 * 109.47515 * 300.00173 * 3 2 1 30 30 H 1.08996 * 109.47092 * 60.00018 * 4 3 2 31 31 H 1.09004 * 109.46829 * 300.00230 * 4 3 2 32 32 H 0.97002 * 119.99760 * 185.02679 * 9 8 6 33 33 H 1.08993 * 109.47287 * 204.32722 * 14 5 4 34 34 H 1.09000 * 109.46982 * 324.33278 * 14 5 4 35 35 H 1.09004 * 109.47266 * 89.99572 * 17 16 15 36 36 H 1.09001 * 109.47149 * 209.99342 * 17 16 15 37 37 H 1.08997 * 109.47472 * 329.99457 * 17 16 15 38 38 H 1.09004 * 109.47250 * 269.95315 * 20 19 18 39 39 H 1.08994 * 109.47427 * 29.95782 * 20 19 18 40 40 H 1.09009 * 109.47030 * 149.95852 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4427 0.0006 5 7 4.0582 2.8239 0.0013 6 6 4.2868 3.4698 -1.1843 7 1 4.7121 2.9321 -2.0189 8 6 3.9721 4.8157 -1.3135 9 7 3.1225 5.3758 -0.4789 10 14 4.7544 5.8315 -2.6719 11 1 3.9039 5.7712 -3.8876 12 1 4.8801 7.2422 -2.2252 13 1 6.1014 5.2888 -2.9828 14 6 4.3017 3.5142 1.2703 15 6 5.6778 3.1650 1.7760 16 6 5.9887 2.1395 2.6749 17 6 5.0038 1.1898 3.3067 18 7 7.2825 2.1441 2.8691 19 7 7.8365 3.1807 2.1069 20 6 9.2558 3.5373 2.0396 21 6 6.8317 3.7926 1.4450 22 17 6.9899 5.1418 0.3642 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6766 1.9564 0.8901 29 1 1.6766 1.9564 -0.8900 30 1 3.9337 0.9288 -0.8891 31 1 3.9329 0.9289 0.8909 32 1 2.8466 6.2961 -0.6126 33 1 4.2335 4.5911 1.1171 34 1 3.5560 3.2033 2.0020 35 1 4.8901 0.3099 2.6735 36 1 5.3696 0.8867 4.2877 37 1 4.0394 1.6859 3.4159 38 1 9.4826 4.2731 2.8111 39 1 9.8624 2.6457 2.1983 40 1 9.4785 3.9585 1.0591 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137750109.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:52 Heat of formation + Delta-G solvation = 60.337541 kcal Electronic energy + Delta-G solvation = -21367.163408 eV Core-core repulsion = 18244.251311 eV Total energy + Delta-G solvation = -3122.912097 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.130 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.17028 -37.94812 -37.65194 -35.52116 -34.80836 -33.06455 -31.61357 -30.41469 -29.23570 -27.60897 -25.93923 -24.92437 -22.67643 -21.77183 -21.27679 -20.57933 -18.61910 -17.58831 -16.75762 -16.67015 -16.16895 -15.84649 -15.27400 -15.15704 -14.86155 -14.33186 -14.23336 -14.05283 -13.62081 -13.43592 -13.35158 -13.23196 -13.15297 -13.03883 -12.72067 -12.56456 -12.48568 -12.34944 -12.09199 -11.94024 -11.75841 -11.69738 -11.48355 -11.29993 -11.12546 -10.40929 -9.97652 -9.21048 -8.36503 -7.76329 -5.26900 0.62216 0.74868 1.38992 1.43671 1.49107 1.75332 1.87371 2.54916 3.38511 3.54337 3.92906 4.13963 4.27463 4.33386 4.37730 4.40783 4.49385 4.53788 4.56247 4.67784 4.76695 4.86114 4.99593 5.05808 5.10308 5.13358 5.19099 5.20568 5.27046 5.40390 5.49038 5.64541 5.68897 5.75433 5.81942 5.88846 5.93923 6.60940 6.67177 7.31570 8.00630 8.54485 9.26353 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.012074 B = 0.008614 C = 0.005402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.514698 B = 3249.662531 C = 5182.441516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.115 4.115 3 C -0.119 4.119 4 C 0.148 3.852 5 N -0.586 5.586 6 C -0.247 4.247 7 H 0.039 0.961 8 C 0.003 3.997 9 N -0.908 5.908 10 Si 0.903 3.097 11 H -0.286 1.286 12 H -0.290 1.290 13 H -0.271 1.271 14 C 0.226 3.774 15 C -0.222 4.222 16 C 0.076 3.924 17 C -0.065 4.065 18 N -0.300 5.300 19 N -0.380 5.380 20 C 0.093 3.907 21 C 0.117 3.883 22 Cl -0.008 7.008 23 H 0.050 0.950 24 H 0.041 0.959 25 H 0.067 0.933 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.040 0.960 29 H 0.027 0.973 30 H 0.029 0.971 31 H 0.055 0.945 32 H 0.250 0.750 33 H 0.074 0.926 34 H 0.036 0.964 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.107 0.893 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.382 -6.788 6.505 10.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C -0.159 4.159 4 C 0.023 3.977 5 N -0.306 5.306 6 C -0.378 4.378 7 H 0.056 0.944 8 C -0.195 4.195 9 N -0.553 5.553 10 Si 0.733 3.267 11 H -0.213 1.213 12 H -0.216 1.216 13 H -0.196 1.196 14 C 0.099 3.901 15 C -0.236 4.236 16 C -0.090 4.090 17 C -0.124 4.124 18 N -0.125 5.125 19 N -0.166 5.166 20 C -0.047 4.047 21 C -0.036 4.036 22 Cl 0.019 6.981 23 H 0.070 0.930 24 H 0.060 0.940 25 H 0.086 0.914 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.059 0.941 29 H 0.046 0.954 30 H 0.047 0.953 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.092 0.908 34 H 0.054 0.946 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.101 0.899 38 H 0.109 0.891 39 H 0.125 0.875 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.526 -6.978 7.018 11.855 hybrid contribution -0.144 1.704 -1.687 2.403 sum 6.382 -5.274 5.330 9.847 Atomic orbital electron populations 1.21735 0.95648 1.01773 1.01227 1.21467 0.96068 0.95891 1.01932 1.21959 0.98098 0.96070 0.99786 1.21017 0.92106 0.85969 0.98638 1.43879 1.74390 1.10963 1.01374 1.18882 1.34492 0.92670 0.91752 0.94376 1.25259 0.97089 0.99015 0.98145 1.69950 1.32814 1.13497 1.39012 0.86235 0.79946 0.79259 0.81299 1.21315 1.21634 1.19592 1.19013 0.86468 0.99131 0.85506 1.21103 0.98057 1.00340 1.04138 1.22578 0.92408 0.97091 0.96912 1.20278 0.95340 0.96242 1.00505 1.77217 1.09763 1.07596 1.17884 1.48708 1.07592 1.24881 1.35422 1.22148 0.74756 1.03453 1.04366 1.21513 0.90605 0.94351 0.97135 1.98382 1.97676 1.40912 1.61083 0.93045 0.94004 0.91353 0.92460 0.90999 0.94120 0.95412 0.95269 0.92677 0.94051 0.90761 0.94562 0.89595 0.89349 0.89908 0.89079 0.87476 0.89101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 9.91 71.98 0.71 -3.00 16 2 C -0.12 -3.28 5.93 30.60 0.18 -3.10 16 3 C -0.12 -4.51 5.54 30.60 0.17 -4.34 16 4 C 0.15 6.02 5.69 86.38 0.49 6.51 16 5 N -0.59 -28.17 2.41 -706.33 -1.70 -29.87 16 6 C -0.25 -13.19 9.46 84.04 0.80 -12.40 16 7 H 0.04 2.13 7.90 -2.91 -0.02 2.10 16 8 C 0.00 0.17 4.93 84.87 0.42 0.59 16 9 N -0.91 -51.05 11.50 21.65 0.25 -50.80 16 10 Si 0.90 43.86 29.50 68.60 2.02 45.88 16 11 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 12 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 13 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 14 C 0.23 10.43 5.35 85.63 0.46 10.89 16 15 C -0.22 -9.24 5.68 -20.11 -0.11 -9.35 16 16 C 0.08 2.72 7.22 43.10 0.31 3.03 16 17 C -0.07 -1.76 9.53 71.24 0.68 -1.08 16 18 N -0.30 -10.71 12.57 -47.39 -0.60 -11.30 16 19 N -0.38 -13.13 4.01 -359.27 -1.44 -14.57 16 20 C 0.09 2.18 11.31 127.77 1.44 3.62 16 21 C 0.12 4.70 7.45 83.57 0.62 5.32 16 22 Cl -0.01 -0.34 28.32 -2.72 -0.08 -0.42 16 23 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 26 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 29 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.03 1.21 8.04 -2.39 -0.02 1.19 16 31 H 0.05 1.99 6.45 -2.39 -0.02 1.97 16 32 H 0.25 13.80 8.32 -92.71 -0.77 13.03 16 33 H 0.07 3.93 5.47 -2.39 -0.01 3.91 16 34 H 0.04 1.60 7.12 -2.39 -0.02 1.58 16 35 H 0.09 2.14 7.34 -2.39 -0.02 2.12 16 36 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.08 2.18 7.19 -2.39 -0.02 2.17 16 38 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 39 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.09 2.00 7.81 -2.38 -0.02 1.98 16 Total: -1.00 -62.94 344.68 5.64 -57.30 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: 1.01 Total: 7.10 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: 6.17 Total: -3.31 kcal Atomic # 7 Polarization: -103.06 SS G_CDS: -3.49 Total: -106.55 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.02 Total: 45.88 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -0.08 Total: -0.42 kcal Total: -62.94 5.64 -57.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137750109.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.640 kcal (2) G-P(sol) polarization free energy of solvation -62.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds