Wall clock time and date at job start Tue Mar 31 2020 05:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00051 * 2 1 4 4 H 1.48499 * 109.47120 * 270.00329 * 3 2 1 5 5 H 1.48499 * 109.47034 * 30.00274 * 3 2 1 6 6 H 1.48505 * 109.47017 * 150.00585 * 3 2 1 7 7 C 1.37879 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00140 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00045 * 179.97438 * 7 2 1 10 10 C 1.53516 * 114.16556 * 179.97438 * 9 7 2 11 11 N 1.47486 * 87.92735 * 220.33137 * 10 9 7 12 12 C 1.46899 * 111.00127 * 138.71167 * 11 10 9 13 13 C 1.50697 * 109.47317 * 169.99595 * 12 11 10 14 14 C 1.38310 * 119.88226 * 270.02055 * 13 12 11 15 15 C 1.38030 * 120.11679 * 179.97438 * 14 13 12 16 16 C 1.39305 * 119.88151 * 359.97438 * 15 14 13 17 17 C 1.48459 * 120.11567 * 179.97438 * 16 15 14 18 18 N 1.34047 * 126.67652 * 0.02773 * 17 16 15 19 19 N 1.28984 * 107.27170 * 179.97438 * 18 17 16 20 20 N 1.28734 * 108.94418 * 0.02562 * 19 18 17 21 21 H 0.96992 * 125.34157 * 179.97438 * 20 19 18 22 22 N 1.28877 * 109.31443 * 359.72937 * 20 19 18 23 23 C 1.39297 * 119.76560 * 0.02562 * 16 15 14 24 24 C 1.38030 * 119.88374 * 359.97438 * 23 16 15 25 25 C 1.47475 * 87.83979 * 27.01185 * 11 10 9 26 26 H 0.96998 * 119.99861 * 359.97438 * 1 2 3 27 27 H 1.08992 * 113.25689 * 312.94365 * 9 7 2 28 28 H 1.08998 * 113.47442 * 105.56452 * 10 9 7 29 29 H 1.08989 * 113.47794 * 335.08978 * 10 9 7 30 30 H 1.08998 * 109.47090 * 49.99084 * 12 11 10 31 31 H 1.09005 * 109.46144 * 289.99432 * 12 11 10 32 32 H 1.08000 * 119.94051 * 359.97438 * 14 13 12 33 33 H 1.08001 * 120.05899 * 180.27528 * 15 14 13 34 34 H 1.08000 * 120.05978 * 179.97438 * 23 16 15 35 35 H 1.07997 * 119.94619 * 179.97438 * 24 23 16 36 36 H 1.08998 * 113.47583 * 87.75333 * 25 11 10 37 37 H 1.08998 * 113.47709 * 218.22922 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.1401 -2.5946 -0.0010 11 7 5.1437 -2.0858 0.9524 12 6 5.4154 -3.0717 2.0069 13 6 6.6090 -2.6288 2.8132 14 6 7.8800 -3.0233 2.4364 15 6 8.9767 -2.6201 3.1710 16 6 8.8018 -1.8139 4.2935 17 6 9.9777 -1.3776 5.0878 18 7 11.2619 -1.6779 4.8481 19 7 11.9664 -1.1064 5.7650 20 7 11.1799 -0.4683 6.5596 21 1 11.4599 0.0455 7.3331 22 7 9.9625 -0.6151 6.1630 23 6 7.5196 -1.4194 4.6686 24 6 6.4297 -1.8283 3.9269 25 6 4.1406 -1.0999 1.3961 26 1 -0.4850 0.8400 0.0004 27 1 3.9416 -0.5117 -0.7341 28 1 4.5622 -2.8812 -0.9643 29 1 3.4908 -3.3619 0.4204 30 1 5.6225 -4.0410 1.5535 31 1 4.5463 -3.1541 2.6597 32 1 8.0144 -3.6481 1.5657 33 1 9.9691 -2.9250 2.8734 34 1 7.3785 -0.7947 5.5383 35 1 5.4351 -1.5234 4.2171 36 1 3.4914 -1.4684 2.1903 37 1 4.5632 -0.1197 1.6168 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139091210.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:32 Heat of formation + Delta-G solvation = 186.058547 kcal Electronic energy + Delta-G solvation = -20895.441750 eV Core-core repulsion = 17676.873831 eV Total energy + Delta-G solvation = -3218.567919 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.66144 -39.75476 -38.64768 -34.71208 -34.02612 -32.74129 -31.72093 -31.01131 -28.99104 -26.19474 -25.09884 -24.88845 -23.93673 -22.43220 -22.16090 -20.71276 -19.42612 -18.67034 -17.35291 -17.13890 -16.83208 -15.50095 -15.35228 -15.13711 -14.51333 -14.16860 -13.85735 -13.64559 -13.46700 -13.18965 -12.90086 -12.61432 -12.50714 -11.96228 -11.75476 -11.59200 -11.44930 -11.25878 -11.06257 -10.99726 -10.92823 -10.35370 -9.98107 -9.93805 -9.62232 -9.15466 -8.95879 -8.60150 -8.50261 -8.18287 -6.12710 -4.13354 0.59141 1.00417 1.40796 2.00542 2.22971 3.28756 3.37410 3.42350 3.51056 3.77158 4.00740 4.40497 4.73896 4.85036 4.96272 5.02553 5.11465 5.17454 5.25235 5.37479 5.43573 5.64170 5.70410 5.86570 5.92920 6.04905 6.07962 6.10923 6.26321 6.37274 6.37811 6.39452 6.48952 6.63936 6.74026 6.88330 6.97253 7.32980 7.65800 7.80568 7.92437 8.46226 8.90256 9.50370 10.99728 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.027431 B = 0.003218 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.503244 B = 8697.870521 C = 9305.859429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.074 3.926 3 Si 0.875 3.125 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.257 1.257 7 C -0.512 4.512 8 H 0.074 0.926 9 C 0.000 4.000 10 C 0.009 3.991 11 N -0.477 5.477 12 C 0.049 3.951 13 C -0.035 4.035 14 C -0.107 4.107 15 C -0.075 4.075 16 C -0.036 4.036 17 C 0.229 3.771 18 N -0.271 5.271 19 N -0.053 5.053 20 N -0.230 5.230 21 H 0.474 0.526 22 N -0.298 5.298 23 C -0.077 4.077 24 C -0.115 4.115 25 C -0.010 4.010 26 H 0.264 0.736 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.056 0.944 32 H 0.130 0.870 33 H 0.133 0.867 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.065 0.935 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.510 -3.192 12.399 23.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.129 4.129 3 Si 0.702 3.298 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.181 1.181 7 C -0.549 4.549 8 H 0.092 0.908 9 C -0.020 4.020 10 C -0.120 4.120 11 N -0.200 5.200 12 C -0.079 4.079 13 C -0.036 4.036 14 C -0.126 4.126 15 C -0.096 4.096 16 C -0.039 4.039 17 C -0.050 4.050 18 N -0.144 5.144 19 N -0.048 5.048 20 N -0.076 5.076 21 H 0.328 0.672 22 N -0.149 5.149 23 C -0.098 4.098 24 C -0.133 4.133 25 C -0.139 4.139 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.074 0.926 32 H 0.148 0.852 33 H 0.151 0.849 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.084 0.916 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 20.678 -2.851 12.339 24.248 hybrid contribution -0.627 0.992 0.898 1.477 sum 20.051 -1.859 13.237 24.098 Atomic orbital electron populations 1.69907 1.06425 1.27139 1.50140 1.25012 0.94633 0.99247 0.93963 0.86882 0.80769 0.83395 0.78741 1.20279 1.21518 1.18102 1.20919 0.88236 0.94504 1.51280 0.90789 1.20504 0.96229 0.92774 0.92444 1.23818 0.92426 0.99564 0.96163 1.68917 1.31730 1.09474 1.09841 1.21722 0.94836 0.96916 0.94419 1.20059 0.95053 0.94760 0.93748 1.20962 0.91321 1.00772 0.99519 1.21109 0.99676 0.95664 0.93118 1.17179 0.87998 1.02578 0.96159 1.23791 0.93092 0.95713 0.92425 1.76079 1.01811 1.19280 1.17212 1.78889 1.21007 1.06134 0.98776 1.47717 1.01659 1.34705 1.23529 0.67167 1.74956 1.03925 1.20715 1.15302 1.21081 0.90785 0.98413 0.99479 1.21039 0.98942 0.98044 0.95311 1.24458 0.92184 0.95962 1.01329 0.92580 0.92568 0.91406 0.91947 0.90450 0.92624 0.85191 0.84927 0.85249 0.85326 0.91643 0.91842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.78 13.96 55.43 0.77 -26.00 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.88 20.96 27.14 -169.99 -4.61 16.35 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.26 -5.86 5.68 56.52 0.32 -5.54 16 7 C -0.51 -13.79 9.37 -34.44 -0.32 -14.11 16 8 H 0.07 2.16 8.06 -52.49 -0.42 1.74 16 9 C 0.00 0.00 2.96 -91.23 -0.27 -0.27 16 10 C 0.01 0.17 7.25 -7.53 -0.05 0.11 16 11 N -0.48 -8.62 6.32 -246.07 -1.55 -10.17 16 12 C 0.05 0.73 4.94 -4.98 -0.02 0.70 16 13 C -0.03 -0.48 5.47 -104.57 -0.57 -1.05 16 14 C -0.11 -1.33 9.68 -39.63 -0.38 -1.71 16 15 C -0.08 -0.91 9.70 -39.26 -0.38 -1.29 16 16 C -0.04 -0.45 5.88 -104.89 -0.62 -1.06 16 17 C 0.23 2.83 7.94 -156.30 -1.24 1.59 16 18 N -0.27 -3.40 12.23 32.15 0.39 -3.01 16 19 N -0.05 -0.55 13.47 60.35 0.81 0.26 16 20 N -0.23 -1.80 7.90 60.35 0.48 -1.33 16 21 H 0.47 1.32 8.96 -340.37 -3.05 -1.74 16 22 N -0.30 -3.18 12.08 32.17 0.39 -2.79 16 23 C -0.08 -0.95 9.70 -39.26 -0.38 -1.33 16 24 C -0.11 -1.51 9.68 -39.63 -0.38 -1.89 16 25 C -0.01 -0.21 6.69 -7.54 -0.05 -0.26 16 26 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 27 H 0.06 1.31 7.04 -51.93 -0.37 0.94 16 28 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.06 1.18 7.87 -51.94 -0.41 0.77 16 30 H 0.08 1.03 8.02 -51.93 -0.42 0.61 16 31 H 0.06 0.83 7.24 -51.93 -0.38 0.45 16 32 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 33 H 0.13 1.43 7.89 -52.49 -0.41 1.01 16 34 H 0.13 1.41 7.88 -52.49 -0.41 1.00 16 35 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 36 H 0.07 1.33 7.37 -51.93 -0.38 0.95 16 37 H 0.06 1.32 7.11 -51.93 -0.37 0.95 16 LS Contribution 317.73 15.07 4.79 4.79 Total: -1.00 -31.64 317.73 -10.42 -42.05 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -7.10 Total: -1.55 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: -4.78 Total: -18.60 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: 1.29 Total: -43.04 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.61 Total: 16.35 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.64 -10.42 -42.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139091210.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 228.112 kcal (2) G-P(sol) polarization free energy of solvation -31.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 196.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 186.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds