Wall clock time and date at job start Tue Mar 31 2020 05:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00051 * 2 1 4 4 H 1.48499 * 109.47120 * 270.00329 * 3 2 1 5 5 H 1.48499 * 109.47034 * 30.00274 * 3 2 1 6 6 H 1.48505 * 109.47017 * 150.00585 * 3 2 1 7 7 C 1.37879 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00140 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00045 * 179.97438 * 7 2 1 10 10 C 1.53516 * 114.16556 * 179.97438 * 9 7 2 11 11 N 1.47486 * 87.92735 * 220.33137 * 10 9 7 12 12 C 1.46899 * 111.00127 * 138.71167 * 11 10 9 13 13 C 1.50697 * 109.47317 * 169.99595 * 12 11 10 14 14 C 1.38310 * 119.88226 * 270.02055 * 13 12 11 15 15 C 1.38030 * 120.11679 * 179.97438 * 14 13 12 16 16 C 1.39305 * 119.88151 * 359.97438 * 15 14 13 17 17 C 1.48459 * 120.11567 * 179.97438 * 16 15 14 18 18 N 1.34047 * 126.67652 * 0.02773 * 17 16 15 19 19 N 1.28984 * 107.27170 * 179.97438 * 18 17 16 20 20 N 1.28734 * 108.94418 * 0.02562 * 19 18 17 21 21 H 0.96992 * 125.34157 * 179.97438 * 20 19 18 22 22 N 1.28877 * 109.31443 * 359.72937 * 20 19 18 23 23 C 1.39297 * 119.76560 * 0.02562 * 16 15 14 24 24 C 1.38030 * 119.88374 * 359.97438 * 23 16 15 25 25 C 1.47475 * 87.83979 * 27.01185 * 11 10 9 26 26 H 0.96998 * 119.99861 * 359.97438 * 1 2 3 27 27 H 1.08992 * 113.25689 * 312.94365 * 9 7 2 28 28 H 1.08998 * 113.47442 * 105.56452 * 10 9 7 29 29 H 1.08989 * 113.47794 * 335.08978 * 10 9 7 30 30 H 1.08998 * 109.47090 * 49.99084 * 12 11 10 31 31 H 1.09005 * 109.46144 * 289.99432 * 12 11 10 32 32 H 1.08000 * 119.94051 * 359.97438 * 14 13 12 33 33 H 1.08001 * 120.05899 * 180.27528 * 15 14 13 34 34 H 1.08000 * 120.05978 * 179.97438 * 23 16 15 35 35 H 1.07997 * 119.94619 * 179.97438 * 24 23 16 36 36 H 1.08998 * 113.47583 * 87.75333 * 25 11 10 37 37 H 1.08998 * 113.47709 * 218.22922 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.1401 -2.5946 -0.0010 11 7 5.1437 -2.0858 0.9524 12 6 5.4154 -3.0717 2.0069 13 6 6.6090 -2.6288 2.8132 14 6 7.8800 -3.0233 2.4364 15 6 8.9767 -2.6201 3.1710 16 6 8.8018 -1.8139 4.2935 17 6 9.9777 -1.3776 5.0878 18 7 11.2619 -1.6779 4.8481 19 7 11.9664 -1.1064 5.7650 20 7 11.1799 -0.4683 6.5596 21 1 11.4599 0.0455 7.3331 22 7 9.9625 -0.6151 6.1630 23 6 7.5196 -1.4194 4.6686 24 6 6.4297 -1.8283 3.9269 25 6 4.1406 -1.0999 1.3961 26 1 -0.4850 0.8400 0.0004 27 1 3.9416 -0.5117 -0.7341 28 1 4.5622 -2.8812 -0.9643 29 1 3.4908 -3.3619 0.4204 30 1 5.6225 -4.0410 1.5535 31 1 4.5463 -3.1541 2.6597 32 1 8.0144 -3.6481 1.5657 33 1 9.9691 -2.9250 2.8734 34 1 7.3785 -0.7947 5.5383 35 1 5.4351 -1.5234 4.2171 36 1 3.4914 -1.4684 2.1903 37 1 4.5632 -0.1197 1.6168 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139091210.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:32 Heat of formation + Delta-G solvation = 163.458281 kcal Electronic energy + Delta-G solvation = -20896.421771 eV Core-core repulsion = 17676.873831 eV Total energy + Delta-G solvation = -3219.547940 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -45.47162 -41.04769 -39.86031 -35.60256 -35.03142 -34.55319 -32.94869 -31.94577 -30.43071 -27.68514 -26.65067 -25.75657 -25.17251 -23.47467 -23.33727 -21.78406 -20.40269 -20.17974 -19.08426 -18.15335 -17.80463 -16.90264 -16.60185 -16.36429 -15.93632 -15.43830 -15.12535 -15.02064 -14.58890 -14.42577 -14.28032 -13.86749 -13.47774 -13.40144 -13.24962 -12.89299 -12.54750 -12.41473 -12.32108 -12.08466 -11.97534 -11.83831 -11.72513 -11.56018 -11.34787 -11.05301 -10.62259 -9.89545 -9.75576 -9.46845 -8.27208 -6.31657 -0.30169 0.16558 0.47157 1.30122 1.39533 1.41510 1.42280 1.54362 2.39479 2.66387 2.78826 3.06767 3.15621 3.41734 3.79607 3.94230 4.06431 4.14000 4.19938 4.32604 4.36187 4.42704 4.48356 4.59473 4.72460 4.73963 4.79964 4.92894 4.95771 5.08887 5.12325 5.34081 5.44374 5.45201 5.51899 5.60417 5.66528 5.72599 5.94548 6.29402 6.32585 6.74459 7.10110 7.35379 8.88781 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.027431 B = 0.003218 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.503244 B = 8697.870521 C = 9305.859429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.016 3.984 3 Si 0.939 3.061 4 H -0.272 1.272 5 H -0.289 1.289 6 H -0.237 1.237 7 C -0.511 4.511 8 H 0.036 0.964 9 C -0.018 4.018 10 C 0.018 3.982 11 N -0.471 5.471 12 C 0.051 3.949 13 C -0.051 4.051 14 C -0.105 4.105 15 C -0.077 4.077 16 C -0.039 4.039 17 C 0.215 3.785 18 N -0.293 5.293 19 N -0.056 5.056 20 N -0.201 5.201 21 H 0.494 0.506 22 N -0.299 5.299 23 C -0.079 4.079 24 C -0.122 4.122 25 C 0.001 3.999 26 H 0.266 0.734 27 H 0.056 0.944 28 H 0.084 0.916 29 H 0.061 0.939 30 H 0.096 0.904 31 H 0.053 0.947 32 H 0.146 0.854 33 H 0.144 0.856 34 H 0.140 0.860 35 H 0.130 0.870 36 H 0.060 0.940 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.109 -2.741 13.271 25.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.182 4.182 3 Si 0.763 3.237 4 H -0.198 1.198 5 H -0.216 1.216 6 H -0.160 1.160 7 C -0.549 4.549 8 H 0.054 0.946 9 C -0.037 4.037 10 C -0.110 4.110 11 N -0.193 5.193 12 C -0.077 4.077 13 C -0.052 4.052 14 C -0.123 4.123 15 C -0.097 4.097 16 C -0.043 4.043 17 C -0.065 4.065 18 N -0.166 5.166 19 N -0.051 5.051 20 N -0.052 5.052 21 H 0.353 0.647 22 N -0.151 5.151 23 C -0.099 4.099 24 C -0.141 4.141 25 C -0.128 4.128 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.102 0.898 29 H 0.079 0.921 30 H 0.114 0.886 31 H 0.072 0.928 32 H 0.164 0.836 33 H 0.162 0.838 34 H 0.158 0.842 35 H 0.148 0.852 36 H 0.079 0.921 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 23.317 -2.412 13.228 26.916 hybrid contribution -1.382 0.786 0.714 1.743 sum 21.935 -1.626 13.942 26.042 Atomic orbital electron populations 1.70051 1.08314 1.28106 1.52409 1.25865 0.95309 1.03099 0.93882 0.85854 0.80096 0.78673 0.79031 1.19794 1.21552 1.16017 1.21159 0.90699 0.92976 1.50063 0.94566 1.20515 0.93423 0.95555 0.94202 1.23689 0.92454 0.97425 0.97471 1.68861 1.30133 1.09772 1.10492 1.21737 0.95408 0.96836 0.93695 1.20005 0.95031 0.95944 0.94227 1.21126 0.90805 1.00541 0.99868 1.21256 1.00141 0.95389 0.92888 1.17345 0.88257 1.02377 0.96299 1.23800 0.93080 0.96533 0.93072 1.76060 1.02017 1.20274 1.18214 1.78834 1.20986 1.06395 0.98906 1.47778 1.00684 1.33391 1.23329 0.64682 1.74917 1.04902 1.20400 1.14909 1.21172 0.90511 0.98469 0.99729 1.21128 0.99313 0.98151 0.95480 1.24201 0.92462 0.96823 0.99347 0.92549 0.92637 0.89757 0.92115 0.88580 0.92841 0.83650 0.83840 0.84173 0.85243 0.92134 0.91850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.09 13.96 21.45 0.30 -57.79 16 2 C 0.02 0.90 5.47 84.66 0.46 1.37 16 3 Si 0.94 43.18 27.14 68.60 1.86 45.04 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 5 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 6 H -0.24 -10.03 5.68 99.48 0.57 -9.47 16 7 C -0.51 -28.02 9.37 25.60 0.24 -27.78 16 8 H 0.04 2.20 8.06 -2.91 -0.02 2.17 16 9 C -0.02 -0.78 2.96 -11.19 -0.03 -0.82 16 10 C 0.02 0.67 7.25 83.58 0.61 1.27 16 11 N -0.47 -15.99 6.32 -932.42 -5.89 -21.87 16 12 C 0.05 1.41 4.94 85.56 0.42 1.83 16 13 C -0.05 -1.28 5.47 -19.83 -0.11 -1.39 16 14 C -0.11 -2.35 9.68 22.24 0.22 -2.14 16 15 C -0.08 -1.69 9.70 22.48 0.22 -1.47 16 16 C -0.04 -0.91 5.88 -20.04 -0.12 -1.03 16 17 C 0.21 4.91 7.94 137.38 1.09 6.00 16 18 N -0.29 -6.87 12.23 -52.18 -0.64 -7.51 16 19 N -0.06 -1.06 13.47 37.02 0.50 -0.56 16 20 N -0.20 -2.66 7.90 37.02 0.29 -2.37 16 21 H 0.49 1.40 8.96 -347.55 -3.12 -1.71 16 22 N -0.30 -5.72 12.08 -52.13 -0.63 -6.35 16 23 C -0.08 -1.80 9.70 22.48 0.22 -1.58 16 24 C -0.12 -3.01 9.68 22.24 0.22 -2.79 16 25 C 0.00 0.04 6.69 83.58 0.56 0.60 16 26 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 27 H 0.06 2.49 7.04 -2.39 -0.02 2.48 16 28 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 29 H 0.06 2.25 7.87 -2.39 -0.02 2.23 16 30 H 0.10 2.29 8.02 -2.39 -0.02 2.27 16 31 H 0.05 1.51 7.24 -2.38 -0.02 1.49 16 32 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 33 H 0.14 2.80 7.89 -2.91 -0.02 2.78 16 34 H 0.14 2.81 7.88 -2.91 -0.02 2.79 16 35 H 0.13 3.09 8.06 -2.91 -0.02 3.06 16 36 H 0.06 2.42 7.37 -2.39 -0.02 2.40 16 37 H 0.06 2.49 7.11 -2.39 -0.02 2.47 16 Total: -1.00 -68.07 317.73 -2.37 -70.44 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -2.15 Total: 8.92 kcal Atomic # 6 Polarization: -31.93 SS G_CDS: 3.99 Total: -27.94 kcal Atomic # 7 Polarization: -90.39 SS G_CDS: -6.07 Total: -96.46 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 1.86 Total: 45.04 kcal Total: -68.07 -2.37 -70.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139091210.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 233.895 kcal (2) G-P(sol) polarization free energy of solvation -68.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 165.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 163.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds