Wall clock time and date at job start Tue Mar 31 2020 05:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47283 * 2 1 4 4 C 1.52999 * 109.47283 * 179.97438 * 3 2 1 5 5 C 1.50701 * 109.47322 * 180.02562 * 4 3 2 6 6 N 1.30473 * 125.64272 * 305.02662 * 5 4 3 7 7 C 1.34163 * 109.27237 * 179.97438 * 6 5 4 8 8 C 1.50694 * 125.99469 * 179.97438 * 7 6 5 9 9 N 1.46905 * 109.47033 * 90.02643 * 8 7 6 10 10 C 1.46900 * 110.99850 * 293.95020 * 9 8 7 11 11 C 1.46906 * 111.00051 * 170.00053 * 9 8 7 12 12 C 1.50699 * 109.47140 * 189.99841 * 11 9 8 13 13 H 1.08003 * 119.99962 * 359.97438 * 12 11 9 14 14 C 1.37873 * 119.99861 * 180.02562 * 12 11 9 15 15 N 1.31522 * 120.00244 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99980 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47229 * 89.99965 * 16 14 12 18 18 H 1.48500 * 109.46876 * 209.99805 * 16 14 12 19 19 H 1.48499 * 109.47161 * 329.99530 * 16 14 12 20 20 C 1.34796 * 108.01131 * 0.22656 * 7 6 5 21 21 Cl 1.73606 * 126.59817 * 179.75477 * 20 7 6 22 22 N 1.35157 * 125.64582 * 125.00191 * 5 4 3 23 23 H 0.96994 * 126.39966 * 0.05409 * 22 5 4 24 24 H 1.09000 * 109.47033 * 299.99294 * 1 2 3 25 25 H 1.08996 * 109.47330 * 59.99638 * 1 2 3 26 26 H 1.09005 * 109.47011 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47002 * 240.00155 * 2 1 3 28 28 H 1.09004 * 109.47191 * 120.00713 * 2 1 3 29 29 H 1.09001 * 109.46975 * 60.00139 * 3 2 1 30 30 H 1.08996 * 109.47233 * 300.00422 * 3 2 1 31 31 H 1.09000 * 109.47033 * 60.00706 * 4 3 2 32 32 H 1.08996 * 109.47330 * 300.00362 * 4 3 2 33 33 H 1.08997 * 109.47644 * 330.02764 * 8 7 6 34 34 H 1.09000 * 109.47199 * 210.02041 * 8 7 6 35 35 H 1.08996 * 109.47030 * 296.04770 * 10 9 8 36 36 H 1.08999 * 109.46702 * 56.04909 * 10 9 8 37 37 H 1.08996 * 109.46890 * 176.04778 * 10 9 8 38 38 H 1.09004 * 109.47040 * 309.99779 * 11 9 8 39 39 H 1.09000 * 109.47033 * 69.99731 * 11 9 8 40 40 H 0.96992 * 120.00038 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0724 2.8632 0.0013 6 7 3.7525 3.7832 -0.8669 7 6 4.3856 4.9245 -0.5563 8 6 4.2861 6.2258 -1.3097 9 7 3.1839 7.0267 -0.7602 10 6 1.8886 6.3795 -1.0079 11 6 3.2030 8.3914 -1.3035 12 6 2.2231 9.2482 -0.5441 13 1 1.6438 8.8215 0.2614 14 6 2.0655 10.5765 -0.8781 15 7 2.7706 11.0960 -1.8593 16 14 0.8514 11.6388 0.0637 17 1 1.5377 12.2681 1.2205 18 1 0.3205 12.6971 -0.8325 19 1 -0.2693 10.7956 0.5519 20 6 5.1308 4.7015 0.5446 21 17 6.1487 5.8504 1.3557 22 7 4.9286 3.3956 0.9015 23 1 5.3281 2.9368 1.6569 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5140 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 3.9337 0.9286 -0.8892 32 1 3.9330 0.9287 0.8908 33 1 4.0969 6.0221 -2.3635 34 1 5.2211 6.7768 -1.2083 35 1 1.7062 6.3310 -2.0814 36 1 1.9018 5.3707 -0.5956 37 1 1.0969 6.9569 -0.5306 38 1 4.2049 8.8087 -1.2026 39 1 2.9240 8.3670 -2.3569 40 1 2.6594 12.0304 -2.0946 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139174656.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:34 Heat of formation + Delta-G solvation = 34.127997 kcal Electronic energy + Delta-G solvation = -20152.218959 eV Core-core repulsion = 17028.170331 eV Total energy + Delta-G solvation = -3124.048628 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.130 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.10402 -36.67710 -36.40299 -35.89700 -32.93132 -32.16585 -31.65253 -28.92162 -27.02848 -26.24877 -24.30547 -23.57830 -21.41507 -20.98407 -20.45701 -19.67139 -17.80851 -16.21917 -15.88767 -15.47154 -14.85738 -14.66486 -14.48812 -14.02789 -13.73136 -13.65735 -13.46751 -13.27336 -12.50084 -12.04874 -11.88378 -11.72226 -11.53340 -11.43374 -11.34094 -11.25164 -11.12288 -10.94241 -10.77478 -10.72318 -10.59458 -10.38427 -9.93732 -9.80866 -9.74251 -9.13852 -8.35144 -8.05795 -7.08864 -5.94247 -3.94564 1.76679 1.92090 3.06778 3.30637 3.37779 3.43207 3.47562 4.26376 4.50718 4.57736 4.74751 4.88748 5.01335 5.15448 5.33355 5.35194 5.40187 5.45439 5.47273 5.60638 5.65859 5.72611 5.91109 5.96616 6.06680 6.19925 6.20531 6.26266 6.46675 6.59816 6.66235 6.95947 7.24129 7.39758 7.46362 7.89882 8.05718 8.19390 8.34240 8.65932 9.13165 9.68888 11.16763 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.015365 B = 0.004135 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.907669 B = 6769.254112 C = 7998.623447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C -0.113 4.113 4 C -0.028 4.028 5 C 0.219 3.781 6 N -0.468 5.468 7 C 0.064 3.936 8 C 0.132 3.868 9 N -0.532 5.532 10 C 0.043 3.957 11 C 0.193 3.807 12 C -0.501 4.501 13 H 0.062 0.938 14 C 0.054 3.946 15 N -0.900 5.900 16 Si 0.897 3.103 17 H -0.281 1.281 18 H -0.288 1.288 19 H -0.274 1.274 20 C 0.022 3.978 21 Cl -0.001 7.001 22 N -0.566 5.566 23 H 0.418 0.582 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.075 0.925 33 H 0.040 0.960 34 H 0.082 0.918 35 H 0.011 0.989 36 H 0.050 0.950 37 H 0.067 0.933 38 H 0.030 0.970 39 H -0.008 1.008 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.550 -22.133 5.472 23.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.151 4.151 4 C -0.067 4.067 5 C -0.044 4.044 6 N -0.188 5.188 7 C -0.067 4.067 8 C 0.002 3.998 9 N -0.257 5.257 10 C -0.106 4.106 11 C 0.068 3.932 12 C -0.540 4.540 13 H 0.081 0.919 14 C -0.147 4.147 15 N -0.540 5.540 16 Si 0.725 3.275 17 H -0.207 1.207 18 H -0.214 1.214 19 H -0.199 1.199 20 C -0.118 4.118 21 Cl 0.027 6.973 22 N -0.173 5.173 23 H 0.256 0.744 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.109 0.891 32 H 0.094 0.906 33 H 0.058 0.942 34 H 0.100 0.900 35 H 0.029 0.971 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.048 0.952 39 H 0.010 0.990 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.195 -21.862 5.246 22.709 hybrid contribution 0.219 0.680 0.867 1.124 sum 3.415 -21.182 6.114 22.310 Atomic orbital electron populations 1.21766 0.95675 1.01429 1.02231 1.21523 0.96190 0.96508 1.01825 1.21558 0.92867 0.96908 1.03813 1.20019 0.96810 0.86592 1.03326 1.23116 0.94760 0.97520 0.89000 1.70291 1.23873 0.99054 1.25627 1.20609 0.96052 0.95229 0.94789 1.20336 0.97252 0.87613 0.94582 1.62119 1.01195 1.03622 1.58766 1.22165 0.92483 0.97947 0.97979 1.19741 0.97824 0.82307 0.93280 1.21157 1.21848 0.94152 1.16856 0.91934 1.24975 0.96386 0.97947 0.95358 1.69964 1.41185 1.13679 1.29161 0.86518 0.81348 0.80047 0.79604 1.20719 1.21386 1.19915 1.21440 1.06379 0.83984 0.99983 1.98394 1.65546 1.54557 1.78800 1.42989 1.38598 1.09597 1.26140 0.74423 0.92702 0.92422 0.92910 0.91865 0.92248 0.91775 0.90176 0.89123 0.90600 0.94179 0.89970 0.97061 0.93142 0.91456 0.95165 0.99036 0.93033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 37.16 0.37 -0.76 16 2 C -0.12 -0.86 5.93 -26.73 -0.16 -1.02 16 3 C -0.11 -1.02 5.17 -26.73 -0.14 -1.16 16 4 C -0.03 -0.24 5.84 -27.88 -0.16 -0.40 16 5 C 0.22 2.77 7.43 -155.33 -1.15 1.62 16 6 N -0.47 -7.69 10.39 -7.02 -0.07 -7.76 16 7 C 0.06 1.13 5.71 -82.80 -0.47 0.66 16 8 C 0.13 2.63 5.34 -4.98 -0.03 2.60 16 9 N -0.53 -12.29 4.74 -245.82 -1.17 -13.46 16 10 C 0.04 0.94 9.19 60.06 0.55 1.49 16 11 C 0.19 5.22 4.72 -4.97 -0.02 5.20 16 12 C -0.50 -14.49 8.52 -34.44 -0.29 -14.79 16 13 H 0.06 1.80 7.10 -52.48 -0.37 1.43 16 14 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 15 N -0.90 -27.25 13.29 55.43 0.74 -26.51 16 16 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 20 C 0.02 0.35 7.85 -16.52 -0.13 0.22 16 21 Cl 0.00 -0.02 28.91 -51.86 -1.50 -1.52 16 22 N -0.57 -6.72 6.16 -7.41 -0.05 -6.77 16 23 H 0.42 3.41 8.96 -40.82 -0.37 3.04 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.04 0.81 8.12 -51.93 -0.42 0.39 16 34 H 0.08 1.61 7.70 -51.93 -0.40 1.21 16 35 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.05 1.02 6.53 -51.93 -0.34 0.68 16 37 H 0.07 1.53 6.86 -51.93 -0.36 1.18 16 38 H 0.03 0.86 7.93 -51.93 -0.41 0.45 16 39 H -0.01 -0.23 8.12 -51.93 -0.42 -0.66 16 40 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 346.47 15.07 5.22 5.22 Total: -1.00 -32.38 346.47 -10.04 -42.42 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: -6.45 Total: -3.88 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -1.74 Total: -4.87 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: -0.55 Total: -54.50 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Atomic # 17 Polarization: -0.02 SS G_CDS: -1.50 Total: -1.52 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.38 -10.04 -42.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139174656.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.544 kcal (2) G-P(sol) polarization free energy of solvation -32.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds