Wall clock time and date at job start Tue Mar 31 2020 05:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47283 * 2 1 4 4 C 1.52999 * 109.47283 * 179.97438 * 3 2 1 5 5 C 1.50701 * 109.47322 * 180.02562 * 4 3 2 6 6 N 1.30473 * 125.64272 * 305.02662 * 5 4 3 7 7 C 1.34163 * 109.27237 * 179.97438 * 6 5 4 8 8 C 1.50694 * 125.99469 * 179.97438 * 7 6 5 9 9 N 1.46905 * 109.47033 * 90.02643 * 8 7 6 10 10 C 1.46900 * 110.99850 * 293.95020 * 9 8 7 11 11 C 1.46906 * 111.00051 * 170.00053 * 9 8 7 12 12 C 1.50699 * 109.47140 * 189.99841 * 11 9 8 13 13 H 1.08003 * 119.99962 * 359.97438 * 12 11 9 14 14 C 1.37873 * 119.99861 * 180.02562 * 12 11 9 15 15 N 1.31522 * 120.00244 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99980 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47229 * 89.99965 * 16 14 12 18 18 H 1.48500 * 109.46876 * 209.99805 * 16 14 12 19 19 H 1.48499 * 109.47161 * 329.99530 * 16 14 12 20 20 C 1.34796 * 108.01131 * 0.22656 * 7 6 5 21 21 Cl 1.73606 * 126.59817 * 179.75477 * 20 7 6 22 22 N 1.35157 * 125.64582 * 125.00191 * 5 4 3 23 23 H 0.96994 * 126.39966 * 0.05409 * 22 5 4 24 24 H 1.09000 * 109.47033 * 299.99294 * 1 2 3 25 25 H 1.08996 * 109.47330 * 59.99638 * 1 2 3 26 26 H 1.09005 * 109.47011 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47002 * 240.00155 * 2 1 3 28 28 H 1.09004 * 109.47191 * 120.00713 * 2 1 3 29 29 H 1.09001 * 109.46975 * 60.00139 * 3 2 1 30 30 H 1.08996 * 109.47233 * 300.00422 * 3 2 1 31 31 H 1.09000 * 109.47033 * 60.00706 * 4 3 2 32 32 H 1.08996 * 109.47330 * 300.00362 * 4 3 2 33 33 H 1.08997 * 109.47644 * 330.02764 * 8 7 6 34 34 H 1.09000 * 109.47199 * 210.02041 * 8 7 6 35 35 H 1.08996 * 109.47030 * 296.04770 * 10 9 8 36 36 H 1.08999 * 109.46702 * 56.04909 * 10 9 8 37 37 H 1.08996 * 109.46890 * 176.04778 * 10 9 8 38 38 H 1.09004 * 109.47040 * 309.99779 * 11 9 8 39 39 H 1.09000 * 109.47033 * 69.99731 * 11 9 8 40 40 H 0.96992 * 120.00038 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0724 2.8632 0.0013 6 7 3.7525 3.7832 -0.8669 7 6 4.3856 4.9245 -0.5563 8 6 4.2861 6.2258 -1.3097 9 7 3.1839 7.0267 -0.7602 10 6 1.8886 6.3795 -1.0079 11 6 3.2030 8.3914 -1.3035 12 6 2.2231 9.2482 -0.5441 13 1 1.6438 8.8215 0.2614 14 6 2.0655 10.5765 -0.8781 15 7 2.7706 11.0960 -1.8593 16 14 0.8514 11.6388 0.0637 17 1 1.5377 12.2681 1.2205 18 1 0.3205 12.6971 -0.8325 19 1 -0.2693 10.7956 0.5519 20 6 5.1308 4.7015 0.5446 21 17 6.1487 5.8504 1.3557 22 7 4.9286 3.3956 0.9015 23 1 5.3281 2.9368 1.6569 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5140 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 3.9337 0.9286 -0.8892 32 1 3.9330 0.9287 0.8908 33 1 4.0969 6.0221 -2.3635 34 1 5.2211 6.7768 -1.2083 35 1 1.7062 6.3310 -2.0814 36 1 1.9018 5.3707 -0.5956 37 1 1.0969 6.9569 -0.5306 38 1 4.2049 8.8087 -1.2026 39 1 2.9240 8.3670 -2.3569 40 1 2.6594 12.0304 -2.0946 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139174656.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:34 Heat of formation + Delta-G solvation = 13.489245 kcal Electronic energy + Delta-G solvation = -20153.113923 eV Core-core repulsion = 17028.170331 eV Total energy + Delta-G solvation = -3124.943591 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.130 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.23684 -38.29349 -37.74672 -36.63634 -34.81183 -33.66838 -32.52964 -30.27163 -28.99942 -27.67000 -25.77351 -24.86807 -22.67638 -22.11806 -21.55117 -21.07043 -18.97970 -18.37083 -17.01981 -16.64445 -16.41203 -16.04619 -15.72397 -15.50183 -15.26841 -14.99235 -14.53599 -14.07072 -13.95331 -13.51508 -13.36512 -13.13259 -12.92087 -12.88973 -12.64878 -12.54539 -12.42008 -12.27307 -12.16158 -12.03101 -11.87036 -11.76403 -11.40104 -11.34739 -11.01525 -11.00315 -10.58414 -9.28294 -8.99616 -8.17381 -6.27127 0.59504 0.77975 1.42109 1.44027 1.55055 1.85212 2.32724 2.43178 3.14772 3.24424 3.57658 3.80739 3.99599 4.11506 4.13453 4.36443 4.47096 4.54083 4.61887 4.68133 4.73476 4.77535 4.80511 4.85552 5.04824 5.05816 5.10504 5.16468 5.20384 5.29366 5.34309 5.39827 5.47804 5.57469 5.67432 6.06003 6.31646 6.34113 6.61398 6.87697 6.93880 7.41872 8.93840 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.015365 B = 0.004135 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.907669 B = 6769.254112 C = 7998.623447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.116 4.116 3 C -0.110 4.110 4 C -0.026 4.026 5 C 0.238 3.762 6 N -0.503 5.503 7 C 0.033 3.967 8 C 0.137 3.863 9 N -0.535 5.535 10 C 0.055 3.945 11 C 0.209 3.791 12 C -0.520 4.520 13 H 0.061 0.939 14 C 0.002 3.998 15 N -0.934 5.934 16 Si 0.969 3.031 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.266 1.266 20 C 0.024 3.976 21 Cl 0.001 6.999 22 N -0.548 5.548 23 H 0.438 0.562 24 H 0.049 0.951 25 H 0.045 0.955 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.105 0.895 32 H 0.113 0.887 33 H 0.031 0.969 34 H 0.079 0.921 35 H 0.005 0.995 36 H 0.067 0.933 37 H 0.054 0.946 38 H 0.009 0.991 39 H -0.037 1.037 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.311 -24.093 7.236 25.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.154 4.154 3 C -0.149 4.149 4 C -0.064 4.064 5 C -0.027 4.027 6 N -0.224 5.224 7 C -0.097 4.097 8 C 0.008 3.992 9 N -0.259 5.259 10 C -0.093 4.093 11 C 0.083 3.917 12 C -0.559 4.559 13 H 0.079 0.921 14 C -0.196 4.196 15 N -0.575 5.575 16 Si 0.794 3.206 17 H -0.198 1.198 18 H -0.207 1.207 19 H -0.190 1.190 20 C -0.118 4.118 21 Cl 0.029 6.971 22 N -0.157 5.157 23 H 0.280 0.720 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.096 0.904 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.124 0.876 32 H 0.132 0.868 33 H 0.049 0.951 34 H 0.097 0.903 35 H 0.023 0.977 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.027 0.973 39 H -0.020 1.020 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.973 -23.858 7.034 25.051 hybrid contribution 0.328 1.189 0.301 1.269 sum 3.301 -22.669 7.335 24.054 Atomic orbital electron populations 1.21798 0.96242 1.01953 1.01465 1.21485 0.95662 0.95121 1.03121 1.21494 0.93334 0.98004 1.02021 1.20276 0.96159 0.84119 1.05895 1.23912 0.93044 0.98349 0.87383 1.70225 1.25175 0.99412 1.27572 1.20190 0.98459 0.94857 0.96180 1.20202 0.95794 0.88750 0.94475 1.62046 1.02679 1.02546 1.58678 1.22041 0.91498 0.98316 0.97494 1.19402 0.96131 0.84559 0.91589 1.21416 1.22392 0.94956 1.17101 0.92126 1.25895 0.98198 0.99288 0.96188 1.70089 1.42593 1.14263 1.30522 0.85385 0.78911 0.78059 0.78265 1.19800 1.20651 1.19000 1.21331 1.05796 0.85256 0.99414 1.98395 1.65349 1.54803 1.78544 1.42913 1.38070 1.08227 1.26518 0.71969 0.93177 0.93557 0.91737 0.91012 0.90409 0.92831 0.92811 0.87643 0.86830 0.95131 0.90273 0.97669 0.91478 0.92698 0.97314 1.01966 0.92677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.91 71.98 0.71 -1.35 16 2 C -0.12 -1.31 5.93 30.59 0.18 -1.13 16 3 C -0.11 -1.76 5.17 30.59 0.16 -1.60 16 4 C -0.03 -0.35 5.84 29.85 0.17 -0.17 16 5 C 0.24 5.47 7.43 138.10 1.03 6.49 16 6 N -0.50 -16.17 10.39 -176.12 -1.83 -18.00 16 7 C 0.03 1.18 5.71 41.41 0.24 1.41 16 8 C 0.14 5.66 5.34 85.55 0.46 6.11 16 9 N -0.54 -25.45 4.74 -931.65 -4.42 -29.87 16 10 C 0.06 2.45 9.19 127.69 1.17 3.63 16 11 C 0.21 11.77 4.72 85.56 0.40 12.17 16 12 C -0.52 -30.68 8.52 25.60 0.22 -30.46 16 13 H 0.06 3.53 7.10 -2.91 -0.02 3.51 16 14 C 0.00 0.13 5.46 84.65 0.46 0.59 16 15 N -0.93 -57.54 13.29 21.45 0.28 -57.25 16 16 Si 0.97 45.49 29.54 68.60 2.03 47.52 16 17 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 18 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 19 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 20 C 0.02 0.72 7.85 83.11 0.65 1.37 16 21 Cl 0.00 0.03 28.91 -2.72 -0.08 -0.05 16 22 N -0.55 -11.67 6.16 -177.36 -1.09 -12.76 16 23 H 0.44 5.64 8.96 -92.71 -0.83 4.81 16 24 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 27 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.03 1.30 8.12 -2.39 -0.02 1.28 16 34 H 0.08 3.24 7.70 -2.39 -0.02 3.22 16 35 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 36 H 0.07 2.75 6.53 -2.39 -0.02 2.73 16 37 H 0.05 2.54 6.86 -2.39 -0.02 2.53 16 38 H 0.01 0.52 7.93 -2.38 -0.02 0.50 16 39 H -0.04 -2.27 8.12 -2.39 -0.02 -2.29 16 40 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -71.09 346.47 0.94 -70.14 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: 0.20 Total: 3.22 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: 5.86 Total: -2.94 kcal Atomic # 7 Polarization: -110.84 SS G_CDS: -7.06 Total: -117.89 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Atomic # 17 Polarization: 0.03 SS G_CDS: -0.08 Total: -0.05 kcal Total: -71.09 0.94 -70.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139174656.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.634 kcal (2) G-P(sol) polarization free energy of solvation -71.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds