Wall clock time and date at job start Tue Mar 31 2020 05:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 C 1.52997 * 109.46886 * 108.42321 * 3 2 1 5 5 N 1.46908 * 109.46791 * 181.78101 * 4 3 2 6 6 C 1.46897 * 110.99897 * 75.95468 * 5 4 3 7 7 C 1.50698 * 109.47173 * 195.86050 * 6 5 4 8 8 H 1.07997 * 119.99984 * 355.41865 * 7 6 5 9 9 C 1.37878 * 119.99834 * 175.42247 * 7 6 5 10 10 N 1.31510 * 120.00473 * 0.02562 * 9 7 6 11 11 Si 1.86806 * 119.99540 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46712 * 90.00472 * 11 9 7 13 13 H 1.48505 * 109.46768 * 209.99847 * 11 9 7 14 14 H 1.48497 * 109.47250 * 329.99933 * 11 9 7 15 15 C 1.46895 * 110.99856 * 199.90742 * 5 4 3 16 16 C 1.50703 * 109.46812 * 66.04742 * 15 5 4 17 17 C 1.35458 * 125.69525 * 94.72182 * 16 15 5 18 18 N 1.36035 * 107.16015 * 179.84121 * 17 16 15 19 19 C 1.36686 * 133.73328 * 180.10370 * 18 17 16 20 20 C 1.35001 * 119.74606 * 180.34141 * 19 18 17 21 21 N 1.33515 * 121.24956 * 0.02562 * 20 19 18 22 22 C 1.31140 * 121.37293 * 359.95713 * 21 20 19 23 23 C 1.37390 * 107.12029 * 0.40693 * 18 17 16 24 24 N 1.32303 * 107.97289 * 359.74419 * 23 18 17 25 25 H 1.09001 * 109.47021 * 348.42200 * 3 2 1 26 26 H 1.09002 * 109.46868 * 228.42430 * 3 2 1 27 27 H 1.09001 * 109.46925 * 61.78514 * 4 3 2 28 28 H 1.08994 * 109.47374 * 301.77740 * 4 3 2 29 29 H 1.09000 * 109.47268 * 315.86006 * 6 5 4 30 30 H 1.08999 * 109.46919 * 75.85665 * 6 5 4 31 31 H 0.96996 * 120.00138 * 180.02562 * 10 9 7 32 32 H 1.08995 * 109.47067 * 186.04218 * 15 5 4 33 33 H 1.08997 * 109.47538 * 306.05230 * 15 5 4 34 34 H 1.08006 * 126.41667 * 359.95128 * 17 16 15 35 35 H 1.08000 * 120.12660 * 0.35455 * 19 18 17 36 36 H 1.07995 * 119.37505 * 179.97438 * 20 19 18 37 37 H 1.08002 * 120.14853 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1177 0.4568 -1.3686 5 7 4.5862 0.4166 -1.3824 6 6 5.0739 -0.9635 -1.5060 7 6 6.5326 -1.0162 -1.1310 8 1 7.0647 -0.1046 -0.9026 9 6 7.1878 -2.2283 -1.0797 10 7 6.5400 -3.3383 -1.3584 11 14 8.9961 -2.2935 -0.6156 12 1 9.1242 -2.4435 0.8563 13 1 9.6384 -3.4509 -1.2888 14 1 9.6630 -1.0383 -1.0453 15 6 5.1259 1.2637 -2.4543 16 6 4.8094 2.7076 -2.1609 17 6 5.6290 3.5846 -1.5332 18 7 4.9721 4.7743 -1.4715 19 6 5.2892 6.0036 -0.9651 20 6 4.3984 7.0143 -1.0527 21 7 3.2058 6.8385 -1.6266 22 6 2.8536 5.6790 -2.1279 23 6 3.7459 4.5904 -2.0634 24 7 3.6736 3.3338 -2.4709 25 1 2.9718 -1.0059 0.2063 26 1 2.9710 0.6828 0.7688 27 1 2.7803 1.4752 -1.5610 28 1 2.7289 -0.2069 -2.1408 29 1 4.5040 -1.6113 -0.8400 30 1 4.9508 -1.3015 -2.5349 31 1 7.0008 -4.1910 -1.3219 32 1 6.2065 1.1330 -2.5114 33 1 4.6746 0.9788 -3.4046 34 1 6.6192 3.3785 -1.1544 35 1 6.2488 6.1659 -0.4968 36 1 4.6550 7.9830 -0.6502 37 1 1.8839 5.5591 -2.5881 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139699177.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:58 Heat of formation + Delta-G solvation = 138.958702 kcal Electronic energy + Delta-G solvation = -21405.000896 eV Core-core repulsion = 18184.390574 eV Total energy + Delta-G solvation = -3220.610321 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.08825 -38.75043 -37.29243 -36.00880 -34.31919 -32.72821 -31.66719 -30.39901 -29.56036 -27.50835 -25.86405 -23.84818 -23.46352 -22.96535 -21.11060 -19.84009 -18.44015 -17.54778 -17.15985 -16.57516 -16.17752 -15.66958 -15.24681 -15.05038 -14.57167 -14.36881 -14.09788 -13.93045 -13.69965 -12.99039 -12.82846 -12.69951 -12.44204 -12.09916 -12.01824 -11.58842 -11.38137 -11.30673 -11.00411 -10.89624 -10.68864 -10.45111 -10.25481 -10.06701 -9.79940 -9.33981 -8.85226 -8.49989 -8.19057 -7.43698 -6.09784 -4.11737 0.37147 1.14417 2.35591 2.79019 3.05040 3.09201 3.27030 3.34356 3.35351 3.45261 3.93294 4.07206 4.20610 4.25612 4.39539 4.58049 5.00168 5.07590 5.25265 5.28264 5.30305 5.33772 5.49994 5.61794 5.74113 5.97781 6.05199 6.11391 6.24226 6.30028 6.41658 6.61325 6.77552 7.08692 7.23301 7.48242 7.69560 7.82129 7.84901 7.95236 8.07069 8.40534 8.94970 9.52971 11.00704 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.013615 B = 0.004871 C = 0.003796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.102634 B = 5746.489866 C = 7374.517352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C 0.221 3.779 3 C -0.025 4.025 4 C 0.053 3.947 5 N -0.528 5.528 6 C 0.189 3.811 7 C -0.509 4.509 8 H 0.064 0.936 9 C 0.058 3.942 10 N -0.896 5.896 11 Si 0.896 3.104 12 H -0.281 1.281 13 H -0.288 1.288 14 H -0.274 1.274 15 C 0.139 3.861 16 C 0.087 3.913 17 C -0.057 4.057 18 N -0.352 5.352 19 C 0.013 3.987 20 C 0.027 3.973 21 N -0.471 5.471 22 C 0.196 3.804 23 C 0.148 3.852 24 N -0.459 5.459 25 H 0.115 0.885 26 H 0.109 0.891 27 H 0.084 0.916 28 H 0.035 0.965 29 H 0.040 0.960 30 H -0.006 1.006 31 H 0.262 0.738 32 H 0.104 0.896 33 H 0.045 0.955 34 H 0.191 0.809 35 H 0.170 0.830 36 H 0.175 0.825 37 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.488 16.737 0.343 16.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.138 5.138 2 C -0.097 4.097 3 C -0.065 4.065 4 C -0.077 4.077 5 N -0.253 5.253 6 C 0.065 3.935 7 C -0.547 4.547 8 H 0.082 0.918 9 C -0.144 4.144 10 N -0.535 5.535 11 Si 0.724 3.276 12 H -0.207 1.207 13 H -0.214 1.214 14 H -0.199 1.199 15 C 0.010 3.990 16 C -0.048 4.048 17 C -0.192 4.192 18 N -0.026 5.026 19 C -0.111 4.111 20 C -0.112 4.112 21 N -0.183 5.183 22 C 0.013 3.987 23 C -0.096 4.096 24 N -0.182 5.182 25 H 0.133 0.867 26 H 0.127 0.873 27 H 0.102 0.898 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.012 0.988 31 H 0.072 0.928 32 H 0.123 0.877 33 H 0.063 0.937 34 H 0.208 0.792 35 H 0.187 0.813 36 H 0.192 0.808 37 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -3.013 17.201 0.465 17.469 hybrid contribution 2.574 -0.849 0.109 2.713 sum -0.438 16.352 0.574 16.368 Atomic orbital electron populations 1.81136 1.13246 1.10048 1.09352 1.29448 0.95490 0.92231 0.92482 1.19341 0.80100 1.05941 1.01144 1.22014 0.90354 1.01716 0.93590 1.62036 1.04809 1.13901 1.44579 1.19865 0.96143 0.81561 0.95967 1.21110 0.94419 0.92932 1.46271 0.91787 1.24963 0.98313 0.95641 0.95471 1.69938 1.36548 0.97971 1.49077 0.86540 0.84981 0.77540 0.78551 1.20694 1.21408 1.19908 1.20396 1.01858 0.83548 0.93175 1.21316 0.89091 0.97099 0.97247 1.22686 1.02269 0.83011 1.11268 1.42809 1.14781 1.08682 1.36295 1.22577 1.02985 0.83492 1.02068 1.22087 0.89455 0.99082 1.00534 1.68156 1.17465 1.22768 1.09927 1.22740 0.98061 0.84087 0.93781 1.22082 0.87859 0.95891 1.03725 1.70477 1.23661 1.01424 1.22635 0.86731 0.87306 0.89817 0.94625 0.94202 0.98788 0.92827 0.87745 0.93687 0.79208 0.81290 0.80837 0.79829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -8.22 18.54 42.15 0.78 -7.44 16 2 C 0.22 3.50 15.43 -20.76 -0.32 3.18 16 3 C -0.02 -0.36 5.84 -29.52 -0.17 -0.54 16 4 C 0.05 0.88 4.80 -3.82 -0.02 0.86 16 5 N -0.53 -9.73 4.37 -237.52 -1.04 -10.77 16 6 C 0.19 4.27 4.55 -4.98 -0.02 4.25 16 7 C -0.51 -12.60 8.53 -34.44 -0.29 -12.89 16 8 H 0.06 1.54 7.42 -52.49 -0.39 1.15 16 9 C 0.06 1.50 5.46 -17.82 -0.10 1.40 16 10 N -0.90 -24.72 13.29 55.43 0.74 -23.99 16 11 Si 0.90 19.98 29.54 -169.99 -5.02 14.95 16 12 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 13 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 14 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 15 C 0.14 2.36 5.34 -4.98 -0.03 2.33 16 16 C 0.09 1.34 5.87 -82.93 -0.49 0.85 16 17 C -0.06 -0.75 11.69 -16.68 -0.20 -0.95 16 18 N -0.35 -4.34 2.95 -62.70 -0.19 -4.53 16 19 C 0.01 0.12 11.04 -16.54 -0.18 -0.06 16 20 C 0.03 0.24 11.07 -17.97 -0.20 0.04 16 21 N -0.47 -5.18 10.42 -13.13 -0.14 -5.32 16 22 C 0.20 2.23 11.34 -16.84 -0.19 2.04 16 23 C 0.15 2.02 7.85 -155.98 -1.22 0.80 16 24 N -0.46 -7.15 9.84 -8.95 -0.09 -7.24 16 25 H 0.11 1.74 6.72 -51.93 -0.35 1.39 16 26 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 27 H 0.08 1.39 5.76 -51.93 -0.30 1.09 16 28 H 0.04 0.61 8.00 -51.93 -0.42 0.20 16 29 H 0.04 0.95 6.53 -51.93 -0.34 0.61 16 30 H -0.01 -0.14 8.05 -51.93 -0.42 -0.56 16 31 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.10 1.80 7.01 -51.93 -0.36 1.44 16 33 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 34 H 0.19 2.07 8.06 -52.48 -0.42 1.65 16 35 H 0.17 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.17 0.93 8.06 -52.49 -0.42 0.50 16 37 H 0.18 1.63 8.06 -52.49 -0.42 1.20 16 LS Contribution 325.36 15.07 4.90 4.90 Total: -1.00 -30.71 325.36 -7.72 -38.44 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -4.24 Total: -0.32 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: -3.43 Total: 1.32 kcal Atomic # 7 Polarization: -59.36 SS G_CDS: 0.07 Total: -59.29 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.71 -7.72 -38.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139699177.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.394 kcal (2) G-P(sol) polarization free energy of solvation -30.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds