Wall clock time and date at job start Tue Mar 31 2020 05:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 C 1.52997 * 109.46886 * 108.42321 * 3 2 1 5 5 N 1.46908 * 109.46791 * 181.78101 * 4 3 2 6 6 C 1.46897 * 110.99897 * 75.95468 * 5 4 3 7 7 C 1.50698 * 109.47173 * 195.86050 * 6 5 4 8 8 H 1.07997 * 119.99984 * 355.41865 * 7 6 5 9 9 C 1.37878 * 119.99834 * 175.42247 * 7 6 5 10 10 N 1.31510 * 120.00473 * 0.02562 * 9 7 6 11 11 Si 1.86806 * 119.99540 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46712 * 90.00472 * 11 9 7 13 13 H 1.48505 * 109.46768 * 209.99847 * 11 9 7 14 14 H 1.48497 * 109.47250 * 329.99933 * 11 9 7 15 15 C 1.46895 * 110.99856 * 199.90742 * 5 4 3 16 16 C 1.50703 * 109.46812 * 66.04742 * 15 5 4 17 17 C 1.35458 * 125.69525 * 94.72182 * 16 15 5 18 18 N 1.36035 * 107.16015 * 179.84121 * 17 16 15 19 19 C 1.36686 * 133.73328 * 180.10370 * 18 17 16 20 20 C 1.35001 * 119.74606 * 180.34141 * 19 18 17 21 21 N 1.33515 * 121.24956 * 0.02562 * 20 19 18 22 22 C 1.31140 * 121.37293 * 359.95713 * 21 20 19 23 23 C 1.37390 * 107.12029 * 0.40693 * 18 17 16 24 24 N 1.32303 * 107.97289 * 359.74419 * 23 18 17 25 25 H 1.09001 * 109.47021 * 348.42200 * 3 2 1 26 26 H 1.09002 * 109.46868 * 228.42430 * 3 2 1 27 27 H 1.09001 * 109.46925 * 61.78514 * 4 3 2 28 28 H 1.08994 * 109.47374 * 301.77740 * 4 3 2 29 29 H 1.09000 * 109.47268 * 315.86006 * 6 5 4 30 30 H 1.08999 * 109.46919 * 75.85665 * 6 5 4 31 31 H 0.96996 * 120.00138 * 180.02562 * 10 9 7 32 32 H 1.08995 * 109.47067 * 186.04218 * 15 5 4 33 33 H 1.08997 * 109.47538 * 306.05230 * 15 5 4 34 34 H 1.08006 * 126.41667 * 359.95128 * 17 16 15 35 35 H 1.08000 * 120.12660 * 0.35455 * 19 18 17 36 36 H 1.07995 * 119.37505 * 179.97438 * 20 19 18 37 37 H 1.08002 * 120.14853 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1177 0.4568 -1.3686 5 7 4.5862 0.4166 -1.3824 6 6 5.0739 -0.9635 -1.5060 7 6 6.5326 -1.0162 -1.1310 8 1 7.0647 -0.1046 -0.9026 9 6 7.1878 -2.2283 -1.0797 10 7 6.5400 -3.3383 -1.3584 11 14 8.9961 -2.2935 -0.6156 12 1 9.1242 -2.4435 0.8563 13 1 9.6384 -3.4509 -1.2888 14 1 9.6630 -1.0383 -1.0453 15 6 5.1259 1.2637 -2.4543 16 6 4.8094 2.7076 -2.1609 17 6 5.6290 3.5846 -1.5332 18 7 4.9721 4.7743 -1.4715 19 6 5.2892 6.0036 -0.9651 20 6 4.3984 7.0143 -1.0527 21 7 3.2058 6.8385 -1.6266 22 6 2.8536 5.6790 -2.1279 23 6 3.7459 4.5904 -2.0634 24 7 3.6736 3.3338 -2.4709 25 1 2.9718 -1.0059 0.2063 26 1 2.9710 0.6828 0.7688 27 1 2.7803 1.4752 -1.5610 28 1 2.7289 -0.2069 -2.1408 29 1 4.5040 -1.6113 -0.8400 30 1 4.9508 -1.3015 -2.5349 31 1 7.0008 -4.1910 -1.3219 32 1 6.2065 1.1330 -2.5114 33 1 4.6746 0.9788 -3.4046 34 1 6.6192 3.3785 -1.1544 35 1 6.2488 6.1659 -0.4968 36 1 4.6550 7.9830 -0.6502 37 1 1.8839 5.5591 -2.5881 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139699177.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:57 Heat of formation + Delta-G solvation = 120.335182 kcal Electronic energy + Delta-G solvation = -21405.808472 eV Core-core repulsion = 18184.390574 eV Total energy + Delta-G solvation = -3221.417898 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.03195 -39.72510 -38.63791 -37.41001 -35.27374 -34.60797 -32.87229 -31.59049 -30.51824 -29.09418 -27.22950 -24.84782 -24.78141 -24.18661 -22.42730 -21.15011 -19.33750 -18.56965 -18.40407 -18.32579 -17.24194 -16.71444 -16.54622 -16.07552 -15.98519 -15.69644 -15.34243 -15.11410 -15.02712 -14.26745 -14.05405 -13.78004 -13.70421 -13.64253 -13.35051 -13.08343 -12.88823 -12.59406 -12.50809 -12.39969 -12.31071 -12.00157 -11.61626 -11.23713 -11.10823 -10.91433 -10.47239 -9.86222 -9.08011 -9.01429 -8.07245 -6.14892 -0.43101 0.24112 1.48638 1.52298 1.53185 1.62405 1.66929 1.77683 1.80613 2.50863 2.58637 2.94140 3.01171 3.27533 3.34818 3.39878 3.66185 3.85793 4.14871 4.20410 4.24895 4.28106 4.38869 4.53829 4.67110 4.79731 4.83369 4.94072 4.98168 5.09859 5.28839 5.32943 5.37148 5.51110 5.79386 5.88323 6.16375 6.36618 6.54684 6.61717 6.67153 6.84346 7.00624 7.54239 9.03441 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.013615 B = 0.004871 C = 0.003796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.102634 B = 5746.489866 C = 7374.517352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C 0.242 3.758 3 C -0.013 4.013 4 C 0.058 3.942 5 N -0.522 5.522 6 C 0.202 3.798 7 C -0.510 4.510 8 H 0.073 0.927 9 C 0.005 3.995 10 N -0.936 5.936 11 Si 0.960 3.040 12 H -0.277 1.277 13 H -0.294 1.294 14 H -0.260 1.260 15 C 0.146 3.854 16 C 0.063 3.937 17 C -0.053 4.053 18 N -0.354 5.354 19 C 0.014 3.986 20 C 0.025 3.975 21 N -0.476 5.476 22 C 0.183 3.817 23 C 0.138 3.862 24 N -0.491 5.491 25 H 0.113 0.887 26 H 0.130 0.870 27 H 0.087 0.913 28 H 0.023 0.977 29 H 0.025 0.975 30 H -0.035 1.035 31 H 0.261 0.739 32 H 0.099 0.901 33 H 0.032 0.968 34 H 0.213 0.787 35 H 0.210 0.790 36 H 0.213 0.787 37 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.959 19.381 1.649 19.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.170 5.170 2 C -0.075 4.075 3 C -0.053 4.053 4 C -0.072 4.072 5 N -0.246 5.246 6 C 0.076 3.924 7 C -0.549 4.549 8 H 0.091 0.909 9 C -0.193 4.193 10 N -0.577 5.577 11 Si 0.786 3.214 12 H -0.203 1.203 13 H -0.220 1.220 14 H -0.184 1.184 15 C 0.017 3.983 16 C -0.071 4.071 17 C -0.188 4.188 18 N -0.027 5.027 19 C -0.109 4.109 20 C -0.113 4.113 21 N -0.188 5.188 22 C 0.001 3.999 23 C -0.106 4.106 24 N -0.214 5.214 25 H 0.130 0.870 26 H 0.148 0.852 27 H 0.106 0.894 28 H 0.042 0.958 29 H 0.043 0.957 30 H -0.018 1.018 31 H 0.069 0.931 32 H 0.117 0.883 33 H 0.050 0.950 34 H 0.230 0.770 35 H 0.226 0.774 36 H 0.229 0.771 37 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -1.568 19.880 1.773 20.020 hybrid contribution 2.096 -1.488 -0.309 2.589 sum 0.528 18.392 1.464 18.458 Atomic orbital electron populations 1.81155 1.14185 1.11220 1.10435 1.29490 0.95382 0.91165 0.91447 1.19284 0.79246 1.06230 1.00579 1.21978 0.89173 1.01694 0.94323 1.61973 1.05867 1.11586 1.45216 1.19553 0.95511 0.83645 0.93665 1.21465 0.95354 0.93090 1.44964 0.90934 1.25777 1.02470 0.95393 0.95659 1.70073 1.38278 0.98495 1.50823 0.85519 0.80050 0.77713 0.78120 1.20315 1.22005 1.18369 1.20227 1.01193 0.84813 0.92085 1.20968 0.90241 0.96435 0.99470 1.22867 1.02626 0.82912 1.10396 1.42969 1.14205 1.09512 1.36023 1.23314 1.04619 0.81914 1.01056 1.22790 0.88460 1.00599 0.99480 1.68207 1.18681 1.22327 1.09589 1.23018 0.98586 0.83742 0.94584 1.22356 0.88848 0.95716 1.03727 1.70352 1.24286 1.02727 1.24082 0.86954 0.85229 0.89426 0.95836 0.95672 1.01758 0.93058 0.88310 0.95007 0.77037 0.77366 0.77093 0.78384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -17.46 18.54 20.01 0.37 -17.09 16 2 C 0.24 7.58 15.43 89.45 1.38 8.96 16 3 C -0.01 -0.38 5.84 28.79 0.17 -0.21 16 4 C 0.06 1.94 4.80 86.30 0.41 2.36 16 5 N -0.52 -19.42 4.37 -905.39 -3.96 -23.38 16 6 C 0.20 9.36 4.55 85.56 0.39 9.75 16 7 C -0.51 -25.28 8.53 25.60 0.22 -25.06 16 8 H 0.07 3.41 7.42 -2.91 -0.02 3.38 16 9 C 0.00 0.25 5.46 84.66 0.46 0.72 16 10 N -0.94 -52.58 13.29 21.45 0.28 -52.30 16 11 Si 0.96 40.63 29.54 68.60 2.03 42.65 16 12 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 13 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 14 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 15 C 0.15 5.02 5.34 85.56 0.46 5.47 16 16 C 0.06 1.90 5.87 41.69 0.24 2.15 16 17 C -0.05 -1.29 11.69 83.40 0.98 -0.32 16 18 N -0.35 -7.89 2.95 -352.28 -1.04 -8.93 16 19 C 0.01 0.20 11.04 83.19 0.92 1.12 16 20 C 0.02 0.34 11.07 83.69 0.93 1.27 16 21 N -0.48 -9.26 10.42 -195.45 -2.04 -11.29 16 22 C 0.18 3.91 11.34 85.45 0.97 4.87 16 23 C 0.14 3.61 7.85 134.07 1.05 4.66 16 24 N -0.49 -15.24 9.84 -182.22 -1.79 -17.03 16 25 H 0.11 3.39 6.72 -2.39 -0.02 3.38 16 26 H 0.13 3.27 8.14 -2.39 -0.02 3.25 16 27 H 0.09 2.92 5.76 -2.39 -0.01 2.91 16 28 H 0.02 0.84 8.00 -2.39 -0.02 0.82 16 29 H 0.03 1.24 6.53 -2.39 -0.02 1.22 16 30 H -0.04 -1.82 8.05 -2.39 -0.02 -1.84 16 31 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 32 H 0.10 3.45 7.01 -2.39 -0.02 3.43 16 33 H 0.03 1.16 8.12 -2.39 -0.02 1.14 16 34 H 0.21 4.04 8.06 -2.91 -0.02 4.02 16 35 H 0.21 1.21 8.06 -2.91 -0.02 1.18 16 36 H 0.21 1.20 8.06 -2.91 -0.02 1.17 16 37 H 0.20 3.35 8.06 -2.91 -0.02 3.33 16 Total: -1.00 -66.81 325.36 3.52 -63.29 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: 1.10 Total: 8.34 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: 8.57 Total: 15.74 kcal Atomic # 7 Polarization: -121.85 SS G_CDS: -8.17 Total: -130.02 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.65 kcal Total: -66.81 3.52 -63.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139699177.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.624 kcal (2) G-P(sol) polarization free energy of solvation -66.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds