Wall clock time and date at job start Tue Mar 31 2020 05:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 119.99613 * 2 1 4 4 H 1.48503 * 109.47131 * 269.99695 * 3 2 1 5 5 H 1.48503 * 109.47530 * 30.00025 * 3 2 1 6 6 H 1.48504 * 109.47169 * 150.00073 * 3 2 1 7 7 C 1.37873 * 120.00176 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00033 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00081 * 0.02562 * 7 2 1 10 10 C 1.53509 * 114.17027 * 180.02562 * 9 7 2 11 11 N 1.47480 * 87.92977 * 220.13662 * 10 9 7 12 12 C 1.46904 * 111.00249 * 138.70244 * 11 10 9 13 13 C 1.50699 * 109.47206 * 169.99942 * 12 11 10 14 14 C 1.38330 * 119.94285 * 89.99833 * 13 12 11 15 15 C 1.38292 * 120.24058 * 179.97438 * 14 13 12 16 16 C 1.38055 * 120.11393 * 0.02562 * 15 14 13 17 17 C 1.39271 * 119.88127 * 359.97438 * 16 15 14 18 18 C 1.48469 * 120.11730 * 179.97438 * 17 16 15 19 19 N 1.34044 * 126.67356 * 179.68680 * 18 17 16 20 20 N 1.28987 * 107.26916 * 179.83434 * 19 18 17 21 21 N 1.28735 * 108.94013 * 0.43503 * 20 19 18 22 22 H 0.97001 * 125.33851 * 179.71507 * 21 20 19 23 23 N 1.28866 * 109.31668 * 359.72617 * 21 20 19 24 24 C 1.38004 * 119.93876 * 269.97921 * 13 12 11 25 25 C 1.47482 * 87.83693 * 27.00791 * 11 10 9 26 26 H 0.96998 * 120.00843 * 0.02562 * 1 2 3 27 27 H 1.09000 * 113.25072 * 312.94759 * 9 7 2 28 28 H 1.08996 * 113.48370 * 105.36921 * 10 9 7 29 29 H 1.09002 * 113.47476 * 334.89683 * 10 9 7 30 30 H 1.09001 * 109.46657 * 50.00012 * 12 11 10 31 31 H 1.09000 * 109.46712 * 289.99636 * 12 11 10 32 32 H 1.08006 * 119.88051 * 0.02562 * 14 13 12 33 33 H 1.07997 * 119.94435 * 180.02562 * 15 14 13 34 34 H 1.08001 * 120.05763 * 179.70068 * 16 15 14 35 35 H 1.08000 * 120.06231 * 0.04098 * 24 13 12 36 36 H 1.08999 * 113.47221 * 87.76118 * 25 11 10 37 37 H 1.09000 * 113.47771 * 218.22469 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.1497 -3.7437 0.0018 11 7 1.2058 -4.3606 -0.9487 12 6 1.9221 -5.0910 -2.0030 13 6 0.9404 -5.9051 -2.8059 14 6 0.3346 -5.3534 -3.9205 15 6 -0.5667 -6.0950 -4.6621 16 6 -0.8670 -7.3909 -4.2929 17 6 -0.2599 -7.9513 -3.1716 18 6 -0.5794 -9.3443 -2.7695 19 7 -0.0713 -10.0123 -1.7243 20 7 -0.6069 -11.1857 -1.7229 21 7 -1.4140 -11.2779 -2.7215 22 1 -1.9400 -12.0610 -2.9475 23 7 -1.4134 -10.1666 -3.3741 24 6 0.6478 -7.1997 -2.4283 25 6 0.8528 -2.9999 -1.3948 26 1 -0.4851 0.8400 -0.0004 27 1 0.4447 -2.5305 0.7333 28 1 2.1885 -4.2505 0.9660 29 1 3.1383 -3.5659 -0.4217 30 1 2.6587 -5.7541 -1.5493 31 1 2.4269 -4.3810 -2.6581 32 1 0.5670 -4.3400 -4.2130 33 1 -1.0366 -5.6596 -5.5316 34 1 -1.5747 -7.9676 -4.8699 35 1 1.1210 -7.6295 -1.5577 36 1 1.4952 -2.6237 -2.1910 37 1 -0.2077 -2.8763 -1.6142 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139850786.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:27 Heat of formation + Delta-G solvation = 183.816073 kcal Electronic energy + Delta-G solvation = -20944.567122 eV Core-core repulsion = 17725.901962 eV Total energy + Delta-G solvation = -3218.665160 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.57935 -39.59815 -38.43954 -34.57039 -33.88272 -32.87698 -31.87762 -30.60245 -28.50649 -25.66866 -24.84287 -24.75197 -24.44435 -22.73146 -21.88991 -20.46398 -19.30846 -18.59398 -17.27054 -16.85816 -16.42469 -15.59939 -15.22301 -14.84596 -14.43374 -14.29204 -13.98335 -13.67876 -13.38492 -12.86988 -12.67788 -12.47605 -11.97087 -11.77749 -11.50291 -11.45832 -11.30776 -11.22748 -11.02332 -10.97935 -10.83888 -10.56033 -10.25705 -9.74421 -9.33592 -8.94530 -8.71446 -8.53953 -8.40857 -7.98178 -6.05005 -4.09684 0.67691 1.10196 1.46413 2.07754 2.32628 3.28568 3.36019 3.38944 3.58435 3.85774 4.09005 4.40514 4.87914 4.96021 5.09495 5.13243 5.22550 5.30234 5.31720 5.44175 5.56506 5.66986 5.86334 5.99398 6.10542 6.15449 6.18534 6.33581 6.44870 6.46437 6.50429 6.69840 6.70680 6.76306 6.97160 7.15729 7.20150 7.73542 7.91545 8.01246 8.07890 8.37837 8.93773 9.55358 11.04486 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.034068 B = 0.003038 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.699169 B = 9215.663620 C = 9584.644330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.067 3.933 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.516 4.516 8 H 0.058 0.942 9 C 0.041 3.959 10 C -0.006 4.006 11 N -0.478 5.478 12 C 0.054 3.946 13 C -0.060 4.060 14 C -0.086 4.086 15 C -0.124 4.124 16 C -0.087 4.087 17 C -0.029 4.029 18 C 0.230 3.770 19 N -0.266 5.266 20 N -0.052 5.052 21 N -0.232 5.232 22 H 0.474 0.526 23 N -0.300 5.300 24 C -0.058 4.058 25 C 0.005 3.995 26 H 0.262 0.738 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.052 0.948 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.134 0.866 36 H 0.053 0.947 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.165 -18.643 -9.756 21.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.136 4.136 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.554 4.554 8 H 0.076 0.924 9 C 0.022 3.978 10 C -0.134 4.134 11 N -0.200 5.200 12 C -0.074 4.074 13 C -0.061 4.061 14 C -0.105 4.105 15 C -0.142 4.142 16 C -0.108 4.108 17 C -0.033 4.033 18 C -0.050 4.050 19 N -0.139 5.139 20 N -0.048 5.048 21 N -0.077 5.077 22 H 0.328 0.672 23 N -0.151 5.151 24 C -0.079 4.079 25 C -0.124 4.124 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.152 0.848 36 H 0.072 0.928 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.772 -19.572 -9.143 21.779 hybrid contribution 0.582 1.202 -0.894 1.607 sum -2.190 -18.370 -10.037 21.047 Atomic orbital electron populations 1.69967 1.05981 1.26738 1.49612 1.25018 0.94812 0.99146 0.94640 0.86626 0.79953 0.83494 0.78112 1.20674 1.21165 1.19826 1.21035 0.92738 0.90259 1.51414 0.92424 1.20087 0.94301 0.90775 0.92604 1.24027 0.95757 0.97664 0.95975 1.68936 1.27116 1.14147 1.09810 1.21654 0.94017 0.97340 0.94433 1.19767 0.97992 0.93473 0.94839 1.21311 0.95244 0.99706 0.94265 1.21018 0.98764 0.93910 1.00470 1.21043 0.98790 0.95519 0.95409 1.17182 1.01312 0.86691 0.98088 1.23774 0.93504 0.96738 0.90941 1.76128 1.20935 0.98059 1.18817 1.78914 1.03067 1.14895 1.07877 1.47709 1.30292 1.12939 1.16777 0.67242 1.74912 1.22880 0.94496 1.22837 1.21017 0.95456 0.93297 0.98120 1.24123 1.00237 0.86689 1.01323 0.92868 0.91809 0.91869 0.92725 0.90780 0.92961 0.85573 0.85438 0.85429 0.84817 0.92839 0.91830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.36 13.26 55.43 0.74 -24.63 16 2 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 3 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.52 -13.86 8.83 -34.44 -0.30 -14.16 16 8 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 9 C 0.04 1.03 3.76 -91.24 -0.34 0.68 16 10 C -0.01 -0.12 7.25 -7.54 -0.05 -0.17 16 11 N -0.48 -9.48 6.32 -246.09 -1.55 -11.03 16 12 C 0.05 0.88 4.94 -4.97 -0.02 0.85 16 13 C -0.06 -0.90 5.46 -104.67 -0.57 -1.47 16 14 C -0.09 -1.18 9.69 -39.53 -0.38 -1.56 16 15 C -0.12 -1.47 10.03 -39.63 -0.40 -1.86 16 16 C -0.09 -1.05 9.70 -39.26 -0.38 -1.43 16 17 C -0.03 -0.40 5.88 -104.89 -0.62 -1.02 16 18 C 0.23 3.06 7.94 -156.31 -1.24 1.82 16 19 N -0.27 -3.72 12.23 32.16 0.39 -3.32 16 20 N -0.05 -0.60 13.47 60.35 0.81 0.22 16 21 N -0.23 -1.94 7.90 60.35 0.48 -1.47 16 22 H 0.47 1.49 8.96 -340.37 -3.05 -1.56 16 23 N -0.30 -3.32 12.08 32.17 0.39 -2.93 16 24 C -0.06 -0.84 9.35 -39.26 -0.37 -1.21 16 25 C 0.01 0.11 7.28 -7.54 -0.05 0.06 16 26 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 27 H 0.06 1.75 8.11 -51.93 -0.42 1.33 16 28 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.05 1.09 7.87 -51.93 -0.41 0.68 16 30 H 0.07 1.11 8.02 -51.93 -0.42 0.69 16 31 H 0.05 0.84 7.24 -51.93 -0.38 0.46 16 32 H 0.13 1.66 8.06 -52.48 -0.42 1.24 16 33 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 34 H 0.13 1.31 7.88 -52.49 -0.41 0.89 16 35 H 0.13 1.94 7.89 -52.49 -0.41 1.52 16 36 H 0.05 1.18 7.38 -51.93 -0.38 0.80 16 37 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 LS Contribution 323.57 15.07 4.88 4.88 Total: -1.00 -31.04 323.57 -10.85 -41.89 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -7.12 Total: -1.66 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -4.84 Total: -17.75 kcal Atomic # 7 Polarization: -44.42 SS G_CDS: 1.25 Total: -43.17 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.04 -10.85 -41.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139850786.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 225.702 kcal (2) G-P(sol) polarization free energy of solvation -31.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 194.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 183.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds