Wall clock time and date at job start Tue Mar 31 2020 05:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 119.99613 * 2 1 4 4 H 1.48503 * 109.47131 * 269.99695 * 3 2 1 5 5 H 1.48503 * 109.47530 * 30.00025 * 3 2 1 6 6 H 1.48504 * 109.47169 * 150.00073 * 3 2 1 7 7 C 1.37873 * 120.00176 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00033 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00081 * 0.02562 * 7 2 1 10 10 C 1.53509 * 114.17027 * 180.02562 * 9 7 2 11 11 N 1.47480 * 87.92977 * 220.13662 * 10 9 7 12 12 C 1.46904 * 111.00249 * 138.70244 * 11 10 9 13 13 C 1.50699 * 109.47206 * 169.99942 * 12 11 10 14 14 C 1.38330 * 119.94285 * 89.99833 * 13 12 11 15 15 C 1.38292 * 120.24058 * 179.97438 * 14 13 12 16 16 C 1.38055 * 120.11393 * 0.02562 * 15 14 13 17 17 C 1.39271 * 119.88127 * 359.97438 * 16 15 14 18 18 C 1.48469 * 120.11730 * 179.97438 * 17 16 15 19 19 N 1.34044 * 126.67356 * 179.68680 * 18 17 16 20 20 N 1.28987 * 107.26916 * 179.83434 * 19 18 17 21 21 N 1.28735 * 108.94013 * 0.43503 * 20 19 18 22 22 H 0.97001 * 125.33851 * 179.71507 * 21 20 19 23 23 N 1.28866 * 109.31668 * 359.72617 * 21 20 19 24 24 C 1.38004 * 119.93876 * 269.97921 * 13 12 11 25 25 C 1.47482 * 87.83693 * 27.00791 * 11 10 9 26 26 H 0.96998 * 120.00843 * 0.02562 * 1 2 3 27 27 H 1.09000 * 113.25072 * 312.94759 * 9 7 2 28 28 H 1.08996 * 113.48370 * 105.36921 * 10 9 7 29 29 H 1.09002 * 113.47476 * 334.89683 * 10 9 7 30 30 H 1.09001 * 109.46657 * 50.00012 * 12 11 10 31 31 H 1.09000 * 109.46712 * 289.99636 * 12 11 10 32 32 H 1.08006 * 119.88051 * 0.02562 * 14 13 12 33 33 H 1.07997 * 119.94435 * 180.02562 * 15 14 13 34 34 H 1.08001 * 120.05763 * 179.70068 * 16 15 14 35 35 H 1.08000 * 120.06231 * 0.04098 * 24 13 12 36 36 H 1.08999 * 113.47221 * 87.76118 * 25 11 10 37 37 H 1.09000 * 113.47771 * 218.22469 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.1497 -3.7437 0.0018 11 7 1.2058 -4.3606 -0.9487 12 6 1.9221 -5.0910 -2.0030 13 6 0.9404 -5.9051 -2.8059 14 6 0.3346 -5.3534 -3.9205 15 6 -0.5667 -6.0950 -4.6621 16 6 -0.8670 -7.3909 -4.2929 17 6 -0.2599 -7.9513 -3.1716 18 6 -0.5794 -9.3443 -2.7695 19 7 -0.0713 -10.0123 -1.7243 20 7 -0.6069 -11.1857 -1.7229 21 7 -1.4140 -11.2779 -2.7215 22 1 -1.9400 -12.0610 -2.9475 23 7 -1.4134 -10.1666 -3.3741 24 6 0.6478 -7.1997 -2.4283 25 6 0.8528 -2.9999 -1.3948 26 1 -0.4851 0.8400 -0.0004 27 1 0.4447 -2.5305 0.7333 28 1 2.1885 -4.2505 0.9660 29 1 3.1383 -3.5659 -0.4217 30 1 2.6587 -5.7541 -1.5493 31 1 2.4269 -4.3810 -2.6581 32 1 0.5670 -4.3400 -4.2130 33 1 -1.0366 -5.6596 -5.5316 34 1 -1.5747 -7.9676 -4.8699 35 1 1.1210 -7.6295 -1.5577 36 1 1.4952 -2.6237 -2.1910 37 1 -0.2077 -2.8763 -1.6142 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139850786.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:24 Heat of formation + Delta-G solvation = 162.457403 kcal Electronic energy + Delta-G solvation = -20945.493304 eV Core-core repulsion = 17725.901962 eV Total energy + Delta-G solvation = -3219.591341 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 2.25 seconds Orbital eigenvalues (eV) -45.46543 -40.96237 -39.80191 -35.50416 -35.02872 -34.54089 -33.22796 -31.58760 -30.07103 -27.34588 -26.51693 -25.74219 -25.47349 -24.27849 -22.91005 -21.60401 -20.43529 -20.15177 -18.63716 -18.14563 -17.64493 -16.74388 -16.61858 -16.39523 -16.06220 -15.66704 -15.37456 -14.86717 -14.47523 -14.07571 -14.02078 -13.69050 -13.41741 -13.32696 -13.09344 -12.85636 -12.50861 -12.41595 -12.40349 -12.27313 -12.09952 -11.94008 -11.80507 -11.48691 -11.16511 -10.84443 -10.47523 -9.78045 -9.68682 -9.51877 -8.12341 -6.23737 -0.27224 0.18088 0.43444 1.32755 1.42692 1.44487 1.45797 1.56087 2.44691 2.65659 2.80850 3.15764 3.17194 3.49862 3.84445 3.96635 4.12133 4.21394 4.22285 4.35460 4.41601 4.47901 4.53636 4.59880 4.72921 4.79710 4.90140 4.96424 5.00527 5.09033 5.28428 5.43414 5.46209 5.47577 5.62719 5.65937 5.73136 5.88102 5.96021 6.32390 6.42677 6.86009 7.11152 7.44789 8.97388 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.034068 B = 0.003038 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.699169 B = 9215.663620 C = 9584.644330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.014 3.986 3 Si 0.957 3.043 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.529 4.529 8 H 0.061 0.939 9 C 0.020 3.980 10 C 0.009 3.991 11 N -0.479 5.479 12 C 0.056 3.944 13 C -0.077 4.077 14 C -0.097 4.097 15 C -0.117 4.117 16 C -0.081 4.081 17 C -0.037 4.037 18 C 0.214 3.786 19 N -0.299 5.299 20 N -0.058 5.058 21 N -0.199 5.199 22 H 0.495 0.505 23 N -0.293 5.293 24 C -0.069 4.069 25 C 0.022 3.978 26 H 0.262 0.738 27 H 0.026 0.974 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.057 0.943 32 H 0.128 0.872 33 H 0.158 0.842 34 H 0.150 0.850 35 H 0.127 0.873 36 H 0.056 0.944 37 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.981 -19.600 -11.276 22.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.185 4.185 3 Si 0.783 3.217 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.567 4.567 8 H 0.079 0.921 9 C 0.001 3.999 10 C -0.120 4.120 11 N -0.201 5.201 12 C -0.072 4.072 13 C -0.078 4.078 14 C -0.117 4.117 15 C -0.134 4.134 16 C -0.101 4.101 17 C -0.040 4.040 18 C -0.065 4.065 19 N -0.171 5.171 20 N -0.052 5.052 21 N -0.050 5.050 22 H 0.354 0.646 23 N -0.145 5.145 24 C -0.089 4.089 25 C -0.108 4.108 26 H 0.071 0.929 27 H 0.045 0.955 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.106 0.894 31 H 0.075 0.925 32 H 0.146 0.854 33 H 0.175 0.825 34 H 0.167 0.833 35 H 0.145 0.855 36 H 0.074 0.926 37 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.579 -20.566 -10.660 23.308 hybrid contribution 0.442 1.332 -0.455 1.475 sum -2.138 -19.234 -11.115 22.318 Atomic orbital electron populations 1.70099 1.07550 1.27539 1.50923 1.25828 0.95581 1.02692 0.94390 0.85569 0.78731 0.79081 0.78356 1.19881 1.21148 1.19002 1.21375 0.93039 0.91356 1.50910 0.92120 1.20033 0.94488 0.92107 0.93305 1.23859 0.95623 0.95598 0.96911 1.68859 1.27692 1.12816 1.10761 1.21660 0.94472 0.97346 0.93695 1.19674 0.98761 0.93685 0.95635 1.21458 0.95803 1.00086 0.94322 1.21334 0.97696 0.93613 1.00782 1.21318 0.98397 0.95661 0.94745 1.17325 1.01182 0.87018 0.98459 1.23776 0.94360 0.97018 0.91363 1.76112 1.22215 0.98956 1.19784 1.78853 1.03582 1.14237 1.08574 1.47778 1.28965 1.12991 1.15292 0.64593 1.74864 1.22195 0.94804 1.22667 1.20979 0.96205 0.93386 0.98364 1.23817 0.98997 0.88174 0.99778 0.92897 0.95540 0.91013 0.91540 0.89430 0.92521 0.85418 0.82461 0.83269 0.85526 0.92566 0.93789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.99 13.26 21.45 0.28 -53.71 16 2 C 0.01 0.79 5.46 84.65 0.46 1.25 16 3 Si 0.96 42.83 29.54 68.60 2.03 44.86 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 7 C -0.53 -28.65 8.83 25.60 0.23 -28.42 16 8 H 0.06 3.17 7.81 -2.91 -0.02 3.15 16 9 C 0.02 1.00 3.76 -11.20 -0.04 0.96 16 10 C 0.01 0.36 7.25 83.58 0.61 0.96 16 11 N -0.48 -19.02 6.32 -932.49 -5.89 -24.91 16 12 C 0.06 1.79 4.94 85.56 0.42 2.22 16 13 C -0.08 -2.27 5.46 -19.90 -0.11 -2.38 16 14 C -0.10 -2.56 9.69 22.30 0.22 -2.34 16 15 C -0.12 -2.50 10.03 22.24 0.22 -2.27 16 16 C -0.08 -1.77 9.70 22.47 0.22 -1.55 16 17 C -0.04 -0.95 5.88 -20.04 -0.12 -1.07 16 18 C 0.21 5.44 7.94 137.38 1.09 6.53 16 19 N -0.30 -8.12 12.23 -52.18 -0.64 -8.76 16 20 N -0.06 -1.24 13.47 37.02 0.50 -0.74 16 21 N -0.20 -2.90 7.90 37.02 0.29 -2.61 16 22 H 0.49 1.79 8.96 -347.54 -3.12 -1.33 16 23 N -0.29 -5.86 12.08 -52.13 -0.63 -6.49 16 24 C -0.07 -1.97 9.35 22.48 0.21 -1.76 16 25 C 0.02 0.98 7.28 83.57 0.61 1.59 16 26 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 27 H 0.03 1.52 8.11 -2.39 -0.02 1.50 16 28 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 29 H 0.07 2.58 7.87 -2.39 -0.02 2.56 16 30 H 0.09 2.54 8.02 -2.39 -0.02 2.52 16 31 H 0.06 1.76 7.24 -2.39 -0.02 1.74 16 32 H 0.13 3.25 8.06 -2.91 -0.02 3.23 16 33 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 34 H 0.15 2.58 7.88 -2.91 -0.02 2.56 16 35 H 0.13 3.72 7.89 -2.91 -0.02 3.70 16 36 H 0.06 2.49 7.38 -2.39 -0.02 2.47 16 37 H 0.04 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -67.26 323.57 -2.05 -69.31 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -2.01 Total: 9.33 kcal Atomic # 6 Polarization: -30.30 SS G_CDS: 4.01 Total: -26.28 kcal Atomic # 7 Polarization: -91.13 SS G_CDS: -6.08 Total: -97.22 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -67.26 -2.05 -69.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139850786.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 231.770 kcal (2) G-P(sol) polarization free energy of solvation -67.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 164.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 162.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.25 seconds