Wall clock time and date at job start Tue Mar 31 2020 06:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34227 * 117.00035 * 2 1 4 4 O 1.20826 * 119.99847 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99851 * 180.02562 * 3 2 1 6 6 H 1.08997 * 109.47603 * 59.99755 * 5 3 2 7 7 N 1.46503 * 109.47066 * 179.97438 * 5 3 2 8 8 C 1.34770 * 119.99954 * 275.00144 * 7 5 3 9 9 O 1.21283 * 120.00509 * 359.97438 * 8 7 5 10 10 C 1.50706 * 120.00202 * 179.97438 * 8 7 5 11 11 C 1.50699 * 109.47297 * 179.97438 * 10 8 7 12 12 H 1.07993 * 119.99916 * 0.02562 * 11 10 8 13 13 C 1.37877 * 119.99787 * 179.97438 * 11 10 8 14 14 N 1.31512 * 120.00073 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99819 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47005 * 60.00088 * 15 13 11 17 17 H 1.48501 * 109.46996 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47114 * 300.00046 * 15 13 11 19 19 C 1.53003 * 109.46976 * 299.99438 * 5 3 2 20 20 C 1.53174 * 109.61696 * 305.22549 * 19 5 3 21 21 C 1.53095 * 109.16381 * 176.89131 * 20 19 5 22 22 O 1.42910 * 109.41337 * 302.39093 * 21 20 19 23 23 C 1.42902 * 114.09650 * 61.15575 * 22 21 20 24 24 C 1.53093 * 109.41910 * 298.84413 * 23 22 21 25 25 H 1.08997 * 109.46530 * 60.00546 * 1 2 3 26 26 H 1.09000 * 109.46666 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46919 * 300.00135 * 1 2 3 28 28 H 0.97006 * 119.99803 * 94.99294 * 7 5 3 29 29 H 1.09002 * 109.47145 * 300.00025 * 10 8 7 30 30 H 1.09005 * 109.46632 * 59.99900 * 10 8 7 31 31 H 0.97005 * 119.99907 * 180.02562 * 14 13 11 32 32 H 1.09002 * 109.54370 * 185.00200 * 19 5 3 33 33 H 1.09004 * 109.52433 * 296.79634 * 20 19 5 34 34 H 1.08999 * 109.52728 * 56.98569 * 20 19 5 35 35 H 1.08998 * 109.48473 * 182.41141 * 21 20 19 36 36 H 1.08997 * 109.48189 * 62.37446 * 21 20 19 37 37 H 1.08997 * 109.48292 * 178.85819 * 23 22 21 38 38 H 1.09005 * 109.47939 * 58.82140 * 23 22 21 39 39 H 1.09003 * 109.51855 * 297.70418 * 24 23 22 40 40 H 1.08993 * 109.52292 * 177.51569 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9558 0.7808 -0.8907 7 7 3.9818 2.6797 -0.0011 8 6 4.0749 3.3544 -1.1640 9 8 3.8152 2.7986 -2.2102 10 6 4.5016 4.7998 -1.1645 11 6 4.5255 5.3161 -2.5801 12 1 4.2579 4.6630 -3.3976 13 6 4.8878 6.6224 -2.8314 14 7 5.2132 7.4177 -1.8359 15 14 4.9167 7.2626 -4.5861 16 1 3.5596 7.1465 -5.1777 17 1 5.3374 8.6868 -4.5866 18 1 5.8767 6.4631 -5.3890 19 6 4.1139 0.5810 1.2484 20 6 3.4685 1.1876 2.4981 21 6 3.9645 0.4348 3.7355 22 8 3.6526 -0.9536 3.6035 23 6 4.2671 -1.5852 2.4786 24 6 3.7835 -0.9136 1.1907 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 4.1898 3.1242 0.8357 29 1 3.7973 5.3868 -0.5751 30 1 5.4979 4.8846 -0.7304 31 1 5.4677 8.3369 -2.0127 32 1 5.1948 0.7140 1.2951 33 1 3.7444 2.2392 2.5767 34 1 2.3844 1.0987 2.4280 35 1 3.4757 0.8341 4.6242 36 1 5.0435 0.5578 3.8277 37 1 3.9966 -2.6409 2.4617 38 1 5.3503 -1.4885 2.5542 39 1 2.7057 -1.0449 1.0941 40 1 4.2845 -1.3646 0.3343 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143203568.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:30 Heat of formation + Delta-G solvation = -177.923648 kcal Electronic energy + Delta-G solvation = -23625.267013 eV Core-core repulsion = 20019.021220 eV Total energy + Delta-G solvation = -3606.245793 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.97059 -39.26217 -38.59380 -36.36729 -35.54293 -32.93197 -32.73058 -31.31873 -29.50830 -28.32625 -26.94022 -24.02568 -23.89159 -23.29784 -21.37060 -20.02286 -19.73707 -17.51267 -17.07906 -16.68694 -16.39643 -16.20613 -16.11622 -15.46747 -15.15515 -14.92157 -14.49770 -14.27261 -14.12251 -13.71081 -13.32003 -13.16351 -12.77794 -12.55891 -12.26704 -12.09932 -11.97597 -11.58090 -11.34145 -11.23135 -10.87601 -10.79476 -10.70216 -10.63678 -10.43709 -10.34360 -9.97082 -9.75577 -9.29430 -8.85819 -8.70514 -8.41822 -6.05226 -4.04776 2.35823 2.62015 3.38184 3.40047 3.45059 3.61341 3.69843 3.73245 4.35436 4.41643 4.48632 4.62394 4.79513 4.85500 4.99586 5.09132 5.13047 5.18760 5.27879 5.32814 5.33639 5.43698 5.47945 5.48257 5.51877 5.66671 5.82375 5.88844 6.18857 6.24700 6.45073 6.76830 6.97721 7.15470 7.32332 7.88745 7.92652 7.98676 8.35949 9.04777 9.11315 9.59820 11.07148 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.023963 B = 0.004134 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.164495 B = 6771.832361 C = 7363.722716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.358 6.358 3 C 0.448 3.552 4 O -0.489 6.489 5 C 0.163 3.837 6 H 0.123 0.877 7 N -0.728 5.728 8 C 0.522 3.478 9 O -0.541 6.541 10 C 0.008 3.992 11 C -0.509 4.509 12 H 0.074 0.926 13 C 0.055 3.945 14 N -0.901 5.901 15 Si 0.903 3.097 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.276 1.276 19 C -0.090 4.090 20 C -0.158 4.158 21 C 0.065 3.935 22 O -0.384 6.384 23 C 0.064 3.936 24 C -0.162 4.162 25 H 0.061 0.939 26 H 0.098 0.902 27 H 0.060 0.940 28 H 0.402 0.598 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.262 0.738 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.054 0.946 37 H 0.095 0.905 38 H 0.050 0.950 39 H 0.099 0.901 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.888 -17.863 11.978 21.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.275 6.275 3 C 0.288 3.712 4 O -0.374 6.374 5 C 0.054 3.946 6 H 0.140 0.860 7 N -0.383 5.383 8 C 0.313 3.687 9 O -0.416 6.416 10 C -0.031 4.031 11 C -0.547 4.547 12 H 0.092 0.908 13 C -0.145 4.145 14 N -0.540 5.540 15 Si 0.730 3.270 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.201 1.201 19 C -0.109 4.109 20 C -0.196 4.196 21 C -0.012 4.012 22 O -0.303 6.303 23 C -0.013 4.013 24 C -0.200 4.200 25 H 0.080 0.920 26 H 0.117 0.883 27 H 0.078 0.922 28 H 0.237 0.763 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.114 0.886 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.113 0.887 36 H 0.072 0.928 37 H 0.113 0.887 38 H 0.068 0.932 39 H 0.117 0.883 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.372 -17.838 11.340 21.404 hybrid contribution -0.047 0.975 -0.736 1.223 sum -3.419 -16.862 10.604 20.211 Atomic orbital electron populations 1.23225 0.77166 1.03276 1.02493 1.86540 1.22877 1.33628 1.84407 1.24549 0.92737 0.81524 0.72410 1.90694 1.66637 1.36289 1.43772 1.20415 0.86355 0.86389 1.01412 0.85991 1.46215 1.71027 1.10007 1.11034 1.22162 0.74145 0.90691 0.81664 1.90538 1.48953 1.70225 1.31851 1.19235 0.98346 0.85010 1.00498 1.21103 1.45329 0.96382 0.91899 0.90772 1.24996 0.95207 0.96697 0.97635 1.69949 1.46382 1.06698 1.31001 0.86474 0.78668 0.77386 0.84428 1.20137 1.21328 1.20113 1.21430 1.01439 0.95559 0.92489 1.22357 1.01561 1.00666 0.95039 1.22537 0.99722 0.81423 0.97517 1.87931 1.72692 1.22581 1.47070 1.22566 0.96566 0.97066 0.85098 1.22478 1.04970 0.93769 0.98798 0.91982 0.88339 0.92166 0.76308 0.93149 0.93263 0.92835 0.88573 0.90139 0.91055 0.88720 0.92798 0.88729 0.93172 0.88314 0.90161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 101.05 1.07 1.42 16 2 O -0.36 -4.78 7.66 -39.25 -0.30 -5.08 16 3 C 0.45 7.28 5.72 36.00 0.21 7.48 16 4 O -0.49 -9.77 16.07 -18.75 -0.30 -10.08 16 5 C 0.16 2.39 2.30 -69.08 -0.16 2.23 16 6 H 0.12 1.88 7.58 -51.93 -0.39 1.49 16 7 N -0.73 -12.54 4.55 -54.93 -0.25 -12.79 16 8 C 0.52 12.03 7.65 -10.99 -0.08 11.94 16 9 O -0.54 -14.18 15.12 5.56 0.08 -14.10 16 10 C 0.01 0.21 5.46 -29.03 -0.16 0.05 16 11 C -0.51 -14.95 8.92 -34.44 -0.31 -15.26 16 12 H 0.07 2.27 6.75 -52.49 -0.35 1.92 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -26.57 13.29 55.43 0.74 -25.84 16 15 Si 0.90 22.39 29.54 -169.99 -5.02 17.37 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 19 C -0.09 -0.95 2.20 -90.44 -0.20 -1.15 16 20 C -0.16 -1.61 5.00 -26.59 -0.13 -1.74 16 21 C 0.06 0.57 6.84 37.21 0.25 0.83 16 22 O -0.38 -3.96 10.77 -35.23 -0.38 -4.34 16 23 C 0.06 0.53 6.84 37.21 0.25 0.78 16 24 C -0.16 -1.49 5.15 -26.59 -0.14 -1.63 16 25 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 26 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 28 H 0.40 5.87 7.25 -40.82 -0.30 5.58 16 29 H 0.05 1.34 8.14 -51.93 -0.42 0.91 16 30 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 31 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.08 0.78 6.90 -51.93 -0.36 0.42 16 34 H 0.07 0.84 6.97 -51.93 -0.36 0.48 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.10 1.03 5.30 -51.93 -0.28 0.75 16 40 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 329.00 15.07 4.96 4.96 Total: -1.00 -35.55 329.00 -5.79 -41.34 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -5.82 Total: 2.09 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: 0.51 Total: 6.47 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: 0.49 Total: -38.63 kcal Atomic # 8 Polarization: -32.70 SS G_CDS: -0.90 Total: -33.60 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -35.55 -5.79 -41.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143203568.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.579 kcal (2) G-P(sol) polarization free energy of solvation -35.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds