Wall clock time and date at job start Tue Mar 31 2020 06:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 116.99713 * 2 1 4 4 O 1.20826 * 120.00378 * 359.97438 * 3 2 1 5 5 C 1.50707 * 119.99940 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.47031 * 175.97929 * 5 3 2 7 7 N 1.46494 * 109.54248 * 305.86971 * 6 5 3 8 8 C 1.34780 * 120.00075 * 303.40469 * 7 6 5 9 9 O 1.21281 * 119.99850 * 354.76327 * 8 7 6 10 10 C 1.50702 * 119.99990 * 174.48220 * 8 7 6 11 11 C 1.50699 * 109.46841 * 180.02562 * 10 8 7 12 12 H 1.08003 * 120.00272 * 0.02562 * 11 10 8 13 13 C 1.37876 * 119.99889 * 180.02562 * 11 10 8 14 14 N 1.31514 * 120.00031 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 120.00178 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.46980 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47123 * 119.99856 * 15 13 11 18 18 H 1.48499 * 109.47175 * 239.99890 * 15 13 11 19 19 C 1.53179 * 109.54124 * 66.04602 * 6 5 3 20 20 C 1.53285 * 109.05966 * 176.84983 * 19 6 5 21 21 O 1.42897 * 109.46460 * 302.44584 * 20 19 6 22 22 C 1.42904 * 114.09705 * 61.15898 * 21 20 19 23 23 C 1.53096 * 109.41588 * 298.84194 * 22 21 20 24 24 H 1.08989 * 109.47411 * 300.00113 * 1 2 3 25 25 H 1.09000 * 109.46749 * 60.00609 * 1 2 3 26 26 H 1.09003 * 109.46954 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46817 * 55.97828 * 5 3 2 28 28 H 1.08996 * 109.46839 * 295.97835 * 5 3 2 29 29 H 0.96999 * 120.00239 * 123.40819 * 7 6 5 30 30 H 1.08996 * 109.47055 * 299.99949 * 10 8 7 31 31 H 1.08997 * 109.47347 * 60.00351 * 10 8 7 32 32 H 0.97008 * 120.00090 * 179.97438 * 14 13 11 33 33 H 1.08997 * 109.52252 * 296.83979 * 19 6 5 34 34 H 1.08992 * 109.52285 * 57.03333 * 19 6 5 35 35 H 1.09001 * 109.45685 * 182.44791 * 20 19 6 36 36 H 1.09003 * 109.46845 * 62.44967 * 20 19 6 37 37 H 1.09006 * 109.47964 * 178.86339 * 22 21 20 38 38 H 1.08997 * 109.49142 * 58.83074 * 22 21 20 39 39 H 1.09005 * 109.52036 * 297.70894 * 23 22 21 40 40 H 1.08996 * 109.57552 * 177.54898 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.0003 2.7387 -0.1007 7 7 3.3681 3.3575 -1.2683 8 6 3.5450 2.8230 -2.4929 9 8 4.3024 1.8877 -2.6427 10 6 2.7967 3.3833 -3.6749 11 6 3.1694 2.6140 -4.9160 12 1 3.8770 1.8003 -4.8548 13 6 2.6071 2.9488 -6.1295 14 7 1.7450 3.9392 -6.2039 15 14 3.0685 1.9947 -7.6678 16 1 4.0494 0.9360 -7.3180 17 1 1.8518 1.3699 -8.2464 18 1 3.6706 2.9192 -8.6617 19 6 3.5782 3.4871 1.1674 20 6 4.0868 4.9310 1.0891 21 8 5.5064 4.9276 0.9262 22 6 5.9552 4.2814 -0.2668 23 6 5.5236 2.8127 -0.2432 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 3.9596 0.7196 -0.8509 28 1 3.9523 0.8447 0.9246 29 1 2.8223 4.1521 -1.1602 30 1 1.7243 3.2947 -3.5013 31 1 3.0580 4.4334 -3.8058 32 1 1.3497 4.1751 -7.0578 33 1 2.4911 3.4853 1.2466 34 1 4.0088 2.9965 2.0402 35 1 3.8276 5.4576 2.0076 36 1 3.6246 5.4334 0.2393 37 1 7.0422 4.3399 -0.3250 38 1 5.5176 4.7750 -1.1345 39 1 5.9934 2.3085 0.6013 40 1 5.8267 2.3281 -1.1713 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143204888.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:15 Heat of formation + Delta-G solvation = -172.348914 kcal Electronic energy + Delta-G solvation = -24299.889615 eV Core-core repulsion = 20693.885560 eV Total energy + Delta-G solvation = -3606.004055 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.95526 -39.60128 -37.98311 -36.44773 -34.94527 -32.93310 -31.65357 -31.06103 -29.70187 -28.62418 -27.24955 -24.07734 -23.66601 -23.25466 -20.80973 -20.31216 -18.82655 -17.46232 -16.70856 -16.55837 -16.28790 -16.19447 -15.86962 -15.66161 -15.00819 -14.61288 -14.45673 -14.23857 -13.68364 -13.28247 -13.04758 -12.86515 -12.65581 -12.20872 -12.14040 -12.06643 -11.94376 -11.81736 -11.32165 -11.17774 -10.82010 -10.74623 -10.63661 -10.62480 -10.42275 -10.04535 -9.93665 -9.50223 -9.25422 -8.54572 -8.48020 -8.39980 -6.05677 -4.05359 2.40458 2.84938 3.32328 3.39463 3.47160 3.63404 3.82855 3.95769 4.48024 4.62382 4.66303 4.85653 5.04577 5.11335 5.14668 5.23609 5.25278 5.32555 5.39564 5.46015 5.56222 5.63200 5.73418 5.74647 5.87699 5.96618 6.07930 6.09873 6.30464 6.36423 6.57173 7.06336 7.21593 7.25328 7.34220 7.92574 7.95776 8.07451 8.44218 9.05605 9.20878 9.59670 11.06704 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.014360 B = 0.006112 C = 0.004850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.415046 B = 4580.147272 C = 5771.532331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.363 6.363 3 C 0.468 3.532 4 O -0.498 6.498 5 C -0.128 4.128 6 C 0.194 3.806 7 N -0.731 5.731 8 C 0.518 3.482 9 O -0.546 6.546 10 C 0.005 3.995 11 C -0.506 4.506 12 H 0.076 0.924 13 C 0.054 3.946 14 N -0.900 5.900 15 Si 0.899 3.101 16 H -0.270 1.270 17 H -0.285 1.285 18 H -0.284 1.284 19 C -0.165 4.165 20 C 0.063 3.937 21 O -0.387 6.387 22 C 0.065 3.935 23 C -0.164 4.164 24 H 0.059 0.941 25 H 0.065 0.935 26 H 0.097 0.903 27 H 0.129 0.871 28 H 0.105 0.895 29 H 0.399 0.601 30 H 0.046 0.954 31 H 0.045 0.955 32 H 0.260 0.740 33 H 0.097 0.903 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.053 0.947 37 H 0.092 0.908 38 H 0.056 0.944 39 H 0.073 0.927 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.542 -2.309 16.748 16.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.280 6.280 3 C 0.311 3.689 4 O -0.385 6.385 5 C -0.167 4.167 6 C 0.107 3.893 7 N -0.385 5.385 8 C 0.308 3.692 9 O -0.423 6.423 10 C -0.034 4.034 11 C -0.544 4.544 12 H 0.094 0.906 13 C -0.147 4.147 14 N -0.540 5.540 15 Si 0.727 3.273 16 H -0.195 1.195 17 H -0.211 1.211 18 H -0.210 1.210 19 C -0.203 4.203 20 C -0.014 4.014 21 O -0.305 6.305 22 C -0.011 4.011 23 C -0.203 4.203 24 H 0.078 0.922 25 H 0.084 0.916 26 H 0.116 0.884 27 H 0.147 0.853 28 H 0.123 0.877 29 H 0.234 0.766 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.115 0.885 34 H 0.097 0.903 35 H 0.110 0.890 36 H 0.071 0.929 37 H 0.110 0.890 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.857 -2.531 16.630 16.923 hybrid contribution -0.663 -0.196 -1.032 1.242 sum 1.195 -2.727 15.597 15.879 Atomic orbital electron populations 1.23214 0.76611 1.03371 1.02521 1.86500 1.23292 1.33885 1.84319 1.23642 0.91986 0.81263 0.72030 1.90589 1.67108 1.35955 1.44865 1.21933 0.88041 1.00025 1.06658 1.19900 0.92538 0.90109 0.86760 1.46388 1.53591 1.32488 1.06070 1.21969 0.81019 0.82359 0.83808 1.90451 1.37478 1.29296 1.85098 1.19225 0.96143 0.97994 0.90086 1.21192 1.25557 1.16762 0.90912 0.90607 1.25018 0.95067 0.95334 0.99263 1.69979 1.29644 1.28779 1.25586 0.86402 0.78327 0.79969 0.82582 1.19486 1.21075 1.21013 1.22677 1.03779 0.97034 0.96809 1.22552 0.81603 0.95463 1.01738 1.87883 1.21587 1.78150 1.42930 1.22526 0.99616 0.91643 0.87339 1.22597 0.94513 0.98368 1.04817 0.92227 0.91625 0.88446 0.85341 0.87680 0.76632 0.93597 0.93707 0.92999 0.88459 0.90326 0.88953 0.92907 0.88978 0.92561 0.90814 0.87992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.56 101.05 1.07 1.50 16 2 O -0.36 -5.38 10.57 -39.26 -0.41 -5.79 16 3 C 0.47 7.32 7.46 36.01 0.27 7.59 16 4 O -0.50 -8.42 12.78 -18.75 -0.24 -8.66 16 5 C -0.13 -1.82 4.51 -27.88 -0.13 -1.94 16 6 C 0.19 2.76 0.25 -131.64 -0.03 2.72 16 7 N -0.73 -12.47 2.76 -47.44 -0.13 -12.60 16 8 C 0.52 11.28 7.17 -10.98 -0.08 11.20 16 9 O -0.55 -12.88 11.77 5.56 0.07 -12.81 16 10 C 0.00 0.12 5.46 -29.03 -0.16 -0.04 16 11 C -0.51 -14.57 8.92 -34.44 -0.31 -14.88 16 12 H 0.08 2.26 6.75 -52.48 -0.35 1.90 16 13 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 14 N -0.90 -26.60 13.29 55.43 0.74 -25.86 16 15 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 16 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 C -0.17 -1.96 4.71 -26.49 -0.12 -2.08 16 20 C 0.06 0.74 6.67 37.30 0.25 0.99 16 21 O -0.39 -5.20 10.77 -35.23 -0.38 -5.58 16 22 C 0.07 0.88 6.68 37.21 0.25 1.13 16 23 C -0.16 -2.26 4.81 -26.59 -0.13 -2.39 16 24 H 0.06 0.63 8.13 -51.94 -0.42 0.20 16 25 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 26 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.13 2.13 6.31 -51.93 -0.33 1.81 16 28 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.40 6.44 7.43 -40.82 -0.30 6.14 16 30 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.10 1.23 5.99 -51.93 -0.31 0.92 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.05 0.63 7.03 -51.93 -0.36 0.27 16 37 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.06 0.84 7.75 -51.93 -0.40 0.44 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.10 1.66 6.21 -51.93 -0.32 1.34 16 LS Contribution 322.61 15.07 4.86 4.86 Total: -1.00 -32.72 322.61 -5.49 -38.21 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -5.75 Total: 5.88 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: 0.78 Total: 5.25 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.61 Total: -38.46 kcal Atomic # 8 Polarization: -31.88 SS G_CDS: -0.97 Total: -32.85 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.72 -5.49 -38.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143204888.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.139 kcal (2) G-P(sol) polarization free energy of solvation -32.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds