Wall clock time and date at job start Tue Mar 31 2020 06:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 116.99713 * 2 1 4 4 O 1.20826 * 120.00378 * 359.97438 * 3 2 1 5 5 C 1.50707 * 119.99940 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.47031 * 175.97929 * 5 3 2 7 7 N 1.46494 * 109.54248 * 305.86971 * 6 5 3 8 8 C 1.34780 * 120.00075 * 303.40469 * 7 6 5 9 9 O 1.21281 * 119.99850 * 354.76327 * 8 7 6 10 10 C 1.50702 * 119.99990 * 174.48220 * 8 7 6 11 11 C 1.50699 * 109.46841 * 180.02562 * 10 8 7 12 12 H 1.08003 * 120.00272 * 0.02562 * 11 10 8 13 13 C 1.37876 * 119.99889 * 180.02562 * 11 10 8 14 14 N 1.31514 * 120.00031 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 120.00178 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.46980 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47123 * 119.99856 * 15 13 11 18 18 H 1.48499 * 109.47175 * 239.99890 * 15 13 11 19 19 C 1.53179 * 109.54124 * 66.04602 * 6 5 3 20 20 C 1.53285 * 109.05966 * 176.84983 * 19 6 5 21 21 O 1.42897 * 109.46460 * 302.44584 * 20 19 6 22 22 C 1.42904 * 114.09705 * 61.15898 * 21 20 19 23 23 C 1.53096 * 109.41588 * 298.84194 * 22 21 20 24 24 H 1.08989 * 109.47411 * 300.00113 * 1 2 3 25 25 H 1.09000 * 109.46749 * 60.00609 * 1 2 3 26 26 H 1.09003 * 109.46954 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46817 * 55.97828 * 5 3 2 28 28 H 1.08996 * 109.46839 * 295.97835 * 5 3 2 29 29 H 0.96999 * 120.00239 * 123.40819 * 7 6 5 30 30 H 1.08996 * 109.47055 * 299.99949 * 10 8 7 31 31 H 1.08997 * 109.47347 * 60.00351 * 10 8 7 32 32 H 0.97008 * 120.00090 * 179.97438 * 14 13 11 33 33 H 1.08997 * 109.52252 * 296.83979 * 19 6 5 34 34 H 1.08992 * 109.52285 * 57.03333 * 19 6 5 35 35 H 1.09001 * 109.45685 * 182.44791 * 20 19 6 36 36 H 1.09003 * 109.46845 * 62.44967 * 20 19 6 37 37 H 1.09006 * 109.47964 * 178.86339 * 22 21 20 38 38 H 1.08997 * 109.49142 * 58.83074 * 22 21 20 39 39 H 1.09005 * 109.52036 * 297.70894 * 23 22 21 40 40 H 1.08996 * 109.57552 * 177.54898 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.0003 2.7387 -0.1007 7 7 3.3681 3.3575 -1.2683 8 6 3.5450 2.8230 -2.4929 9 8 4.3024 1.8877 -2.6427 10 6 2.7967 3.3833 -3.6749 11 6 3.1694 2.6140 -4.9160 12 1 3.8770 1.8003 -4.8548 13 6 2.6071 2.9488 -6.1295 14 7 1.7450 3.9392 -6.2039 15 14 3.0685 1.9947 -7.6678 16 1 4.0494 0.9360 -7.3180 17 1 1.8518 1.3699 -8.2464 18 1 3.6706 2.9192 -8.6617 19 6 3.5782 3.4871 1.1674 20 6 4.0868 4.9310 1.0891 21 8 5.5064 4.9276 0.9262 22 6 5.9552 4.2814 -0.2668 23 6 5.5236 2.8127 -0.2432 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 3.9596 0.7196 -0.8509 28 1 3.9523 0.8447 0.9246 29 1 2.8223 4.1521 -1.1602 30 1 1.7243 3.2947 -3.5013 31 1 3.0580 4.4334 -3.8058 32 1 1.3497 4.1751 -7.0578 33 1 2.4911 3.4853 1.2466 34 1 4.0088 2.9965 2.0402 35 1 3.8276 5.4576 2.0076 36 1 3.6246 5.4334 0.2393 37 1 7.0422 4.3399 -0.3250 38 1 5.5176 4.7750 -1.1345 39 1 5.9934 2.3085 0.6013 40 1 5.8267 2.3281 -1.1713 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143204888.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:14 Heat of formation + Delta-G solvation = -194.551304 kcal Electronic energy + Delta-G solvation = -24300.852383 eV Core-core repulsion = 20693.885560 eV Total energy + Delta-G solvation = -3606.966822 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.20060 -40.83105 -39.42908 -37.65085 -36.24319 -35.09427 -33.17837 -32.08252 -30.82496 -30.60895 -28.25775 -25.92077 -24.72980 -24.56945 -21.95779 -21.83391 -20.22091 -18.64597 -18.48645 -18.09368 -17.63441 -17.48304 -17.00767 -16.86779 -16.44875 -16.22915 -16.02693 -15.51950 -14.91352 -14.72054 -14.44137 -14.22250 -13.97556 -13.79469 -13.43102 -13.30847 -13.17551 -12.93580 -12.87926 -12.75441 -12.56503 -12.30757 -12.04570 -11.89426 -11.75660 -11.53402 -11.44277 -11.17283 -10.65529 -10.60190 -10.26422 -9.89091 -8.26818 -6.34589 1.19405 1.37771 1.38273 1.53284 1.76894 1.89054 2.31175 2.49193 2.95456 3.08519 3.53222 3.55195 3.77066 4.00615 4.05954 4.24093 4.27351 4.29608 4.35755 4.38657 4.51260 4.58064 4.65516 4.75641 4.78716 4.83210 4.89471 5.04108 5.07170 5.09283 5.17691 5.22455 5.44350 5.64275 5.75394 6.03688 6.23779 6.68952 6.74615 6.83992 7.32443 7.52501 8.85849 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.014360 B = 0.006112 C = 0.004850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.415046 B = 4580.147272 C = 5771.532331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.372 6.372 3 C 0.462 3.538 4 O -0.517 6.517 5 C -0.127 4.127 6 C 0.187 3.813 7 N -0.713 5.713 8 C 0.524 3.476 9 O -0.566 6.566 10 C 0.007 3.993 11 C -0.530 4.530 12 H 0.061 0.939 13 C 0.006 3.994 14 N -0.928 5.928 15 Si 0.966 3.034 16 H -0.271 1.271 17 H -0.274 1.274 18 H -0.273 1.273 19 C -0.154 4.154 20 C 0.059 3.941 21 O -0.390 6.390 22 C 0.067 3.933 23 C -0.159 4.159 24 H 0.072 0.928 25 H 0.046 0.954 26 H 0.129 0.871 27 H 0.104 0.896 28 H 0.146 0.854 29 H 0.403 0.597 30 H 0.026 0.974 31 H 0.034 0.966 32 H 0.266 0.734 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.119 0.881 36 H 0.044 0.956 37 H 0.108 0.892 38 H 0.034 0.966 39 H 0.102 0.898 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.003 -2.924 18.220 18.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.288 6.288 3 C 0.306 3.694 4 O -0.406 6.406 5 C -0.165 4.165 6 C 0.101 3.899 7 N -0.366 5.366 8 C 0.313 3.687 9 O -0.445 6.445 10 C -0.032 4.032 11 C -0.568 4.568 12 H 0.079 0.921 13 C -0.192 4.192 14 N -0.568 5.568 15 Si 0.790 3.210 16 H -0.195 1.195 17 H -0.200 1.200 18 H -0.198 1.198 19 C -0.191 4.191 20 C -0.018 4.018 21 O -0.309 6.309 22 C -0.010 4.010 23 C -0.197 4.197 24 H 0.091 0.909 25 H 0.065 0.935 26 H 0.147 0.853 27 H 0.122 0.878 28 H 0.164 0.836 29 H 0.239 0.761 30 H 0.044 0.956 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.111 0.889 34 H 0.123 0.877 35 H 0.137 0.863 36 H 0.062 0.938 37 H 0.126 0.874 38 H 0.052 0.948 39 H 0.121 0.879 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.307 -3.135 18.140 18.553 hybrid contribution -0.865 0.010 -1.431 1.672 sum 1.443 -3.125 16.709 17.059 Atomic orbital electron populations 1.23473 0.75074 1.05466 1.02219 1.86490 1.24893 1.33453 1.83993 1.23957 0.92597 0.81289 0.71546 1.90579 1.67653 1.36502 1.45869 1.21972 0.87229 0.99659 1.07628 1.20242 0.92822 0.90509 0.86321 1.46144 1.52792 1.32020 1.05667 1.21160 0.80772 0.82254 0.84491 1.90444 1.38292 1.30129 1.85657 1.19038 0.95460 0.97265 0.91462 1.21399 1.25756 1.16997 0.92673 0.92106 1.25854 0.94795 0.96202 1.02357 1.70068 1.30229 1.29818 1.26676 0.85386 0.78281 0.78656 0.78662 1.19543 1.19995 1.19789 1.22617 1.03583 0.96923 0.95990 1.22725 0.80751 0.95593 1.02731 1.87888 1.22490 1.78078 1.42432 1.22496 1.00492 0.91197 0.86770 1.22533 0.94038 0.98573 1.04582 0.90893 0.93549 0.85254 0.87773 0.83622 0.76129 0.95576 0.94830 0.92514 0.88925 0.87718 0.86297 0.93812 0.87398 0.94806 0.87938 0.90756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 10.56 113.37 1.20 1.89 16 2 O -0.37 -10.63 10.57 -51.43 -0.54 -11.17 16 3 C 0.46 14.07 7.46 71.24 0.53 14.60 16 4 O -0.52 -17.23 12.78 21.96 0.28 -16.95 16 5 C -0.13 -3.42 4.51 29.85 0.13 -3.28 16 6 C 0.19 5.07 0.25 3.72 0.00 5.07 16 7 N -0.71 -24.57 2.76 -422.38 -1.17 -25.74 16 8 C 0.52 23.57 7.17 87.66 0.63 24.20 16 9 O -0.57 -27.47 11.77 -3.03 -0.04 -27.51 16 10 C 0.01 0.39 5.46 29.10 0.16 0.55 16 11 C -0.53 -31.47 8.92 25.60 0.23 -31.24 16 12 H 0.06 3.74 6.75 -2.91 -0.02 3.72 16 13 C 0.01 0.36 5.46 84.65 0.46 0.82 16 14 N -0.93 -55.63 13.29 21.45 0.28 -55.34 16 15 Si 0.97 45.71 29.54 68.60 2.03 47.73 16 16 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 17 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 18 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 19 C -0.15 -3.23 4.71 30.75 0.14 -3.09 16 20 C 0.06 1.23 6.67 72.08 0.48 1.71 16 21 O -0.39 -9.57 10.77 -148.98 -1.60 -11.17 16 22 C 0.07 1.73 6.68 72.01 0.48 2.21 16 23 C -0.16 -4.14 4.81 30.69 0.15 -3.99 16 24 H 0.07 1.43 8.13 -2.39 -0.02 1.41 16 25 H 0.05 1.21 8.13 -2.39 -0.02 1.19 16 26 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.10 3.43 6.31 -2.39 -0.02 3.42 16 28 H 0.15 2.67 8.14 -2.39 -0.02 2.65 16 29 H 0.40 13.21 7.43 -92.71 -0.69 12.53 16 30 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.03 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.27 14.91 8.31 -92.70 -0.77 14.14 16 33 H 0.09 2.13 5.99 -2.39 -0.01 2.11 16 34 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.12 1.90 8.14 -2.39 -0.02 1.89 16 36 H 0.04 1.00 7.03 -2.39 -0.02 0.98 16 37 H 0.11 2.40 8.14 -2.38 -0.02 2.38 16 38 H 0.03 1.01 7.75 -2.39 -0.02 0.99 16 39 H 0.10 2.09 8.14 -2.38 -0.02 2.07 16 40 H 0.07 2.41 6.21 -2.39 -0.01 2.40 16 Total: -1.00 -71.55 322.61 4.21 -67.35 By element: Atomic # 1 Polarization: 23.00 SS G_CDS: 0.37 Total: 23.37 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: 4.60 Total: 9.44 kcal Atomic # 7 Polarization: -80.20 SS G_CDS: -0.88 Total: -81.08 kcal Atomic # 8 Polarization: -64.90 SS G_CDS: -1.90 Total: -66.80 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.73 kcal Total: -71.55 4.21 -67.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143204888.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.205 kcal (2) G-P(sol) polarization free energy of solvation -71.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds