Wall clock time and date at job start Tue Mar 31 2020 06:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45207 * 109.46694 * 2 1 4 4 C 1.34227 * 116.99449 * 180.02562 * 3 2 1 5 5 O 1.20823 * 120.00718 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99617 * 179.97438 * 4 3 2 7 7 H 1.09005 * 109.61699 * 60.21689 * 6 4 3 8 8 C 1.53181 * 109.54292 * 299.99641 * 6 4 3 9 9 C 1.53096 * 109.16280 * 183.15441 * 8 6 4 10 10 O 1.42905 * 109.41382 * 57.60845 * 9 8 6 11 11 C 1.42902 * 114.09583 * 298.83698 * 10 9 8 12 12 C 1.53090 * 109.41282 * 61.16326 * 11 10 9 13 13 H 1.08998 * 109.52249 * 182.41867 * 12 11 10 14 14 N 1.46504 * 109.52197 * 62.29433 * 12 11 10 15 15 C 1.34775 * 119.99774 * 85.00194 * 14 12 11 16 16 O 1.21282 * 120.00425 * 359.97438 * 15 14 12 17 17 C 1.50706 * 119.99705 * 179.97438 * 15 14 12 18 18 C 1.50697 * 109.46873 * 179.97438 * 17 15 14 19 19 H 1.07996 * 120.00416 * 0.02562 * 18 17 15 20 20 C 1.37884 * 119.99953 * 179.97438 * 18 17 15 21 21 N 1.31510 * 119.99769 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99930 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47441 * 90.00399 * 22 20 18 24 24 H 1.48504 * 109.46870 * 210.00221 * 22 20 18 25 25 H 1.48504 * 109.47408 * 329.99884 * 22 20 18 26 26 H 1.09006 * 109.47012 * 60.00672 * 1 2 3 27 27 H 1.09001 * 109.46626 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47526 * 300.00443 * 1 2 3 29 29 H 1.08997 * 109.47526 * 239.99557 * 2 1 3 30 30 H 1.08996 * 109.46917 * 119.99471 * 2 1 3 31 31 H 1.08998 * 109.52547 * 63.24641 * 8 6 4 32 32 H 1.09004 * 109.52249 * 303.05521 * 8 6 4 33 33 H 1.08996 * 109.47593 * 177.59033 * 9 8 6 34 34 H 1.08997 * 109.48187 * 297.62027 * 9 8 6 35 35 H 1.09003 * 109.47624 * 181.14087 * 11 10 9 36 36 H 1.08998 * 109.47961 * 301.16646 * 11 10 9 37 37 H 0.96993 * 119.99901 * 264.99559 * 14 12 11 38 38 H 1.08997 * 109.47279 * 299.99443 * 17 15 14 39 39 H 1.08997 * 109.47092 * 60.00374 * 17 15 14 40 40 H 0.97004 * 119.99833 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3691 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5868 -0.0005 6 6 3.9206 2.9375 -0.0012 7 1 3.5895 3.4709 0.8900 8 6 3.4490 3.6865 -1.2514 9 6 4.1014 5.0711 -1.2837 10 8 5.5230 4.9271 -1.2616 11 6 6.0253 4.2760 -0.0929 12 6 5.4503 2.8594 -0.0128 13 1 5.7982 2.3762 0.9002 14 7 5.8922 2.0852 -1.1754 15 6 7.0868 1.4617 -1.1553 16 8 7.7963 1.5418 -0.1749 17 6 7.5411 0.6648 -2.3511 18 6 8.8997 0.0745 -2.0745 19 1 9.3855 0.2575 -1.1275 20 6 9.5223 -0.7004 -3.0302 21 7 8.9305 -0.9237 -4.1832 22 14 11.2061 -1.4328 -2.6871 23 1 11.0461 -2.7709 -2.0635 24 1 11.9564 -1.5670 -3.9615 25 1 11.9543 -0.5425 -1.7636 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 2.3648 3.7951 -1.2237 32 1 3.7374 3.1272 -2.1415 33 1 3.8029 5.5923 -2.1932 34 1 3.7804 5.6445 -0.4140 35 1 7.1129 4.2244 -0.1447 36 1 5.7297 4.8391 0.7923 37 1 5.3249 2.0214 -1.9596 38 1 6.8288 -0.1371 -2.5452 39 1 7.5995 1.3178 -3.2219 40 1 9.3686 -1.4685 -4.8557 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143205190.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:18 Heat of formation + Delta-G solvation = -176.884678 kcal Electronic energy + Delta-G solvation = -23560.870431 eV Core-core repulsion = 19954.669691 eV Total energy + Delta-G solvation = -3606.200740 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.02735 -39.45686 -37.91282 -36.69433 -34.51187 -32.85977 -32.76388 -31.70544 -30.31196 -28.40462 -26.43481 -24.06697 -23.41091 -23.14422 -21.60271 -20.16635 -19.24803 -17.79439 -16.98792 -16.71158 -16.44187 -16.16033 -15.76018 -15.41188 -15.12354 -14.81494 -14.35353 -14.17663 -13.84431 -13.51265 -13.33537 -12.92414 -12.89495 -12.53797 -12.31502 -12.04102 -11.97187 -11.85291 -11.61403 -11.13260 -10.89019 -10.78922 -10.68007 -10.64635 -10.51837 -10.35224 -9.87814 -9.80705 -9.16949 -8.52656 -8.36345 -8.24806 -5.96646 -3.95189 2.18140 2.49368 3.40868 3.45414 3.52736 3.74391 3.84538 4.01849 4.27218 4.43225 4.51442 4.57415 4.73191 4.75597 4.82437 4.93023 5.08709 5.15628 5.25315 5.37653 5.39945 5.41716 5.50594 5.54488 5.58758 5.71451 5.77622 5.82626 6.00444 6.36079 6.48049 7.06248 7.20473 7.32308 7.46675 7.74057 8.05086 8.16392 8.55069 9.15355 9.37365 9.69082 11.16039 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.016096 B = 0.004762 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.119103 B = 5878.044094 C = 7010.649731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.060 3.940 3 O -0.362 6.362 4 C 0.457 3.543 5 O -0.474 6.474 6 C -0.089 4.089 7 H 0.118 0.882 8 C -0.149 4.149 9 C 0.061 3.939 10 O -0.371 6.371 11 C 0.053 3.947 12 C 0.128 3.872 13 H 0.100 0.900 14 N -0.725 5.725 15 C 0.525 3.475 16 O -0.550 6.550 17 C 0.006 3.994 18 C -0.503 4.503 19 H 0.075 0.925 20 C 0.053 3.947 21 N -0.902 5.902 22 Si 0.901 3.099 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.272 1.272 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.053 0.947 35 H 0.109 0.891 36 H 0.057 0.943 37 H 0.392 0.608 38 H 0.046 0.954 39 H 0.046 0.954 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.533 10.001 7.120 23.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.014 4.014 3 O -0.280 6.280 4 C 0.298 3.702 5 O -0.358 6.358 6 C -0.108 4.108 7 H 0.136 0.864 8 C -0.187 4.187 9 C -0.016 4.016 10 O -0.289 6.289 11 C -0.025 4.025 12 C 0.022 3.978 13 H 0.118 0.882 14 N -0.379 5.379 15 C 0.316 3.684 16 O -0.427 6.427 17 C -0.033 4.033 18 C -0.542 4.542 19 H 0.093 0.907 20 C -0.147 4.147 21 N -0.542 5.542 22 Si 0.729 3.271 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.197 1.197 26 H 0.085 0.915 27 H 0.097 0.903 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.108 0.892 32 H 0.098 0.902 33 H 0.117 0.883 34 H 0.071 0.929 35 H 0.127 0.873 36 H 0.075 0.925 37 H 0.226 0.774 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.633 9.681 7.520 22.304 hybrid contribution 0.250 -0.862 -0.048 0.899 sum -18.383 8.818 7.472 21.715 Atomic orbital electron populations 1.21795 0.92710 1.02947 1.03309 1.23024 0.95163 0.80261 1.02914 1.86464 1.24659 1.32399 1.84474 1.23495 0.80640 0.92482 0.73631 1.90819 1.59956 1.42427 1.42641 1.21445 0.96178 0.90953 1.02257 0.86448 1.22234 1.01972 0.97630 0.96830 1.22579 0.81820 0.94651 1.02542 1.88038 1.20142 1.78591 1.42174 1.23103 1.00891 0.90764 0.87770 1.21245 0.89650 0.93353 0.93586 0.88172 1.46059 1.21462 1.53363 1.17023 1.21862 0.78758 0.77150 0.90677 1.90504 1.54310 1.62128 1.35754 1.19202 0.98257 0.95121 0.90697 1.21175 1.01180 1.29811 1.01995 0.90724 1.25007 0.98263 0.96455 0.94986 1.69971 1.38560 1.39623 1.06075 0.86437 0.83787 0.79461 0.77430 1.20713 1.21336 1.19683 0.91508 0.90277 0.91644 0.90988 0.91270 0.89241 0.90180 0.88287 0.92901 0.87315 0.92518 0.77381 0.93641 0.93585 0.93045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 10.29 37.16 0.38 -0.66 16 2 C 0.06 0.61 6.19 37.16 0.23 0.84 16 3 O -0.36 -4.18 10.15 -39.25 -0.40 -4.58 16 4 C 0.46 6.21 7.05 36.01 0.25 6.46 16 5 O -0.47 -8.54 14.85 -18.75 -0.28 -8.82 16 6 C -0.09 -0.99 2.51 -91.59 -0.23 -1.22 16 7 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 8 C -0.15 -1.38 5.17 -26.59 -0.14 -1.52 16 9 C 0.06 0.56 6.84 37.21 0.25 0.81 16 10 O -0.37 -4.95 10.67 -35.23 -0.38 -5.33 16 11 C 0.05 0.71 6.45 37.20 0.24 0.95 16 12 C 0.13 1.92 1.88 -67.79 -0.13 1.79 16 13 H 0.10 1.70 7.58 -51.93 -0.39 1.31 16 14 N -0.73 -13.45 3.53 -53.67 -0.19 -13.63 16 15 C 0.52 12.67 7.79 -10.98 -0.09 12.58 16 16 O -0.55 -14.79 15.13 5.56 0.08 -14.71 16 17 C 0.01 0.18 5.46 -29.03 -0.16 0.02 16 18 C -0.50 -15.27 8.92 -34.44 -0.31 -15.57 16 19 H 0.07 2.35 6.75 -52.49 -0.35 2.00 16 20 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 21 N -0.90 -27.45 13.29 55.43 0.74 -26.71 16 22 Si 0.90 22.92 29.54 -169.99 -5.02 17.89 16 23 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.79 8.13 -51.93 -0.42 0.37 16 30 H 0.07 0.73 8.13 -51.93 -0.42 0.30 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.85 6.73 -51.93 -0.35 0.50 16 33 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.11 1.74 8.14 -51.93 -0.42 1.32 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.39 6.70 7.03 -40.82 -0.29 6.41 16 38 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.05 1.26 8.14 -51.93 -0.42 0.83 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 LS Contribution 334.71 15.07 5.04 5.04 Total: -1.00 -36.25 334.71 -6.20 -42.44 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -6.01 Total: 2.43 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: 0.22 Total: 5.96 kcal Atomic # 7 Polarization: -40.89 SS G_CDS: 0.55 Total: -40.34 kcal Atomic # 8 Polarization: -32.46 SS G_CDS: -0.97 Total: -33.43 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -36.25 -6.20 -42.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143205190.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.443 kcal (2) G-P(sol) polarization free energy of solvation -36.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds