Wall clock time and date at job start Tue Mar 31 2020 06:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45207 * 109.46694 * 2 1 4 4 C 1.34227 * 116.99449 * 180.02562 * 3 2 1 5 5 O 1.20823 * 120.00718 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99617 * 179.97438 * 4 3 2 7 7 H 1.09005 * 109.61699 * 60.21689 * 6 4 3 8 8 C 1.53181 * 109.54292 * 299.99641 * 6 4 3 9 9 C 1.53096 * 109.16280 * 183.15441 * 8 6 4 10 10 O 1.42905 * 109.41382 * 57.60845 * 9 8 6 11 11 C 1.42902 * 114.09583 * 298.83698 * 10 9 8 12 12 C 1.53090 * 109.41282 * 61.16326 * 11 10 9 13 13 H 1.08998 * 109.52249 * 182.41867 * 12 11 10 14 14 N 1.46504 * 109.52197 * 62.29433 * 12 11 10 15 15 C 1.34775 * 119.99774 * 85.00194 * 14 12 11 16 16 O 1.21282 * 120.00425 * 359.97438 * 15 14 12 17 17 C 1.50706 * 119.99705 * 179.97438 * 15 14 12 18 18 C 1.50697 * 109.46873 * 179.97438 * 17 15 14 19 19 H 1.07996 * 120.00416 * 0.02562 * 18 17 15 20 20 C 1.37884 * 119.99953 * 179.97438 * 18 17 15 21 21 N 1.31510 * 119.99769 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99930 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47441 * 90.00399 * 22 20 18 24 24 H 1.48504 * 109.46870 * 210.00221 * 22 20 18 25 25 H 1.48504 * 109.47408 * 329.99884 * 22 20 18 26 26 H 1.09006 * 109.47012 * 60.00672 * 1 2 3 27 27 H 1.09001 * 109.46626 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47526 * 300.00443 * 1 2 3 29 29 H 1.08997 * 109.47526 * 239.99557 * 2 1 3 30 30 H 1.08996 * 109.46917 * 119.99471 * 2 1 3 31 31 H 1.08998 * 109.52547 * 63.24641 * 8 6 4 32 32 H 1.09004 * 109.52249 * 303.05521 * 8 6 4 33 33 H 1.08996 * 109.47593 * 177.59033 * 9 8 6 34 34 H 1.08997 * 109.48187 * 297.62027 * 9 8 6 35 35 H 1.09003 * 109.47624 * 181.14087 * 11 10 9 36 36 H 1.08998 * 109.47961 * 301.16646 * 11 10 9 37 37 H 0.96993 * 119.99901 * 264.99559 * 14 12 11 38 38 H 1.08997 * 109.47279 * 299.99443 * 17 15 14 39 39 H 1.08997 * 109.47092 * 60.00374 * 17 15 14 40 40 H 0.97004 * 119.99833 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3691 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5868 -0.0005 6 6 3.9206 2.9375 -0.0012 7 1 3.5895 3.4709 0.8900 8 6 3.4490 3.6865 -1.2514 9 6 4.1014 5.0711 -1.2837 10 8 5.5230 4.9271 -1.2616 11 6 6.0253 4.2760 -0.0929 12 6 5.4503 2.8594 -0.0128 13 1 5.7982 2.3762 0.9002 14 7 5.8922 2.0852 -1.1754 15 6 7.0868 1.4617 -1.1553 16 8 7.7963 1.5418 -0.1749 17 6 7.5411 0.6648 -2.3511 18 6 8.8997 0.0745 -2.0745 19 1 9.3855 0.2575 -1.1275 20 6 9.5223 -0.7004 -3.0302 21 7 8.9305 -0.9237 -4.1832 22 14 11.2061 -1.4328 -2.6871 23 1 11.0461 -2.7709 -2.0635 24 1 11.9564 -1.5670 -3.9615 25 1 11.9543 -0.5425 -1.7636 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 2.3648 3.7951 -1.2237 32 1 3.7374 3.1272 -2.1415 33 1 3.8029 5.5923 -2.1932 34 1 3.7804 5.6445 -0.4140 35 1 7.1129 4.2244 -0.1447 36 1 5.7297 4.8391 0.7923 37 1 5.3249 2.0214 -1.9596 38 1 6.8288 -0.1371 -2.5452 39 1 7.5995 1.3178 -3.2219 40 1 9.3686 -1.4685 -4.8557 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143205190.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:17 Heat of formation + Delta-G solvation = -203.007297 kcal Electronic energy + Delta-G solvation = -23562.003193 eV Core-core repulsion = 19954.669691 eV Total energy + Delta-G solvation = -3607.333502 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.14390 -40.69551 -39.48482 -37.77485 -35.80232 -35.10729 -33.99261 -32.46270 -31.79238 -30.30109 -27.41760 -25.90789 -24.48907 -24.12481 -22.66121 -21.64960 -20.60596 -18.83693 -18.53867 -18.26307 -17.70075 -17.39602 -17.29924 -16.67155 -16.36084 -16.23270 -15.97574 -15.35941 -15.17146 -14.80225 -14.56381 -14.24713 -14.07723 -13.73309 -13.56577 -13.40284 -13.18205 -12.89877 -12.79989 -12.64555 -12.59791 -12.46645 -12.05240 -11.82667 -11.78403 -11.55213 -11.47450 -11.35919 -10.85828 -10.64701 -10.50263 -9.77687 -8.26595 -6.34442 1.11428 1.37469 1.39720 1.52379 1.55133 1.92711 2.29350 2.47442 2.99864 3.08172 3.23235 3.55912 3.64222 3.83460 3.97791 4.05707 4.07981 4.29888 4.32659 4.37141 4.42147 4.50514 4.64689 4.75635 4.79640 4.86315 4.92109 5.01351 5.05294 5.10680 5.14069 5.22490 5.43356 5.56505 5.72458 6.02672 6.28308 6.65487 6.69907 6.81193 7.31814 7.52118 8.86188 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.016096 B = 0.004762 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.119103 B = 5878.044094 C = 7010.649731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.052 3.948 3 O -0.350 6.350 4 C 0.459 3.541 5 O -0.529 6.529 6 C -0.079 4.079 7 H 0.162 0.838 8 C -0.143 4.143 9 C 0.056 3.944 10 O -0.396 6.396 11 C 0.061 3.939 12 C 0.121 3.879 13 H 0.077 0.923 14 N -0.706 5.706 15 C 0.526 3.474 16 O -0.584 6.584 17 C 0.010 3.990 18 C -0.535 4.535 19 H 0.056 0.944 20 C 0.007 3.993 21 N -0.927 5.927 22 Si 0.969 3.031 23 H -0.272 1.272 24 H -0.271 1.271 25 H -0.272 1.272 26 H 0.072 0.928 27 H 0.094 0.906 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.122 0.878 32 H 0.060 0.940 33 H 0.117 0.883 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.400 0.600 38 H 0.029 0.971 39 H 0.038 0.962 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.369 11.399 7.593 25.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.022 4.022 3 O -0.267 6.267 4 C 0.303 3.697 5 O -0.418 6.418 6 C -0.098 4.098 7 H 0.179 0.821 8 C -0.181 4.181 9 C -0.020 4.020 10 O -0.315 6.315 11 C -0.017 4.017 12 C 0.016 3.984 13 H 0.095 0.905 14 N -0.358 5.358 15 C 0.315 3.685 16 O -0.465 6.465 17 C -0.029 4.029 18 C -0.574 4.574 19 H 0.074 0.926 20 C -0.191 4.191 21 N -0.566 5.566 22 Si 0.793 3.207 23 H -0.197 1.197 24 H -0.195 1.195 25 H -0.197 1.197 26 H 0.091 0.909 27 H 0.113 0.887 28 H 0.093 0.907 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.140 0.860 32 H 0.079 0.921 33 H 0.134 0.866 34 H 0.104 0.896 35 H 0.092 0.908 36 H 0.117 0.883 37 H 0.235 0.765 38 H 0.047 0.953 39 H 0.056 0.944 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -20.553 11.119 7.976 24.692 hybrid contribution 0.678 -1.283 -0.222 1.468 sum -19.875 9.837 7.754 23.493 Atomic orbital electron populations 1.21795 0.89714 1.04267 1.04069 1.23254 0.97446 0.79517 1.01983 1.86470 1.23362 1.33149 1.83737 1.24022 0.80930 0.92856 0.71924 1.90816 1.61213 1.44320 1.45409 1.21518 0.92792 0.90154 1.05366 0.82100 1.22273 1.03914 0.97196 0.94667 1.22896 0.79319 0.94736 1.05020 1.88012 1.23040 1.78311 1.42170 1.22910 0.98989 0.90043 0.89709 1.21514 0.92782 0.93514 0.90636 0.90532 1.45759 1.19428 1.52074 1.18542 1.21235 0.80332 0.77614 0.89272 1.90472 1.55845 1.63686 1.36457 1.19015 0.97041 0.94909 0.91945 1.21361 1.02837 1.31405 1.01767 0.92603 1.25867 1.02300 0.96377 0.94571 1.70053 1.40165 1.39724 1.06702 0.85390 0.78753 0.78637 0.77903 1.19740 1.19542 1.19673 0.90859 0.88724 0.90675 0.92354 0.91988 0.85998 0.92090 0.86550 0.89646 0.90822 0.88305 0.76522 0.95303 0.94422 0.92382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 10.29 71.98 0.74 -0.92 16 2 C 0.05 1.02 6.19 71.98 0.45 1.46 16 3 O -0.35 -7.46 10.15 -51.38 -0.52 -7.98 16 4 C 0.46 12.07 7.05 71.24 0.50 12.57 16 5 O -0.53 -19.62 14.85 21.97 0.33 -19.29 16 6 C -0.08 -1.57 2.51 -11.42 -0.03 -1.60 16 7 H 0.16 1.90 8.14 -2.38 -0.02 1.88 16 8 C -0.14 -2.18 5.17 30.69 0.16 -2.02 16 9 C 0.06 0.80 6.84 72.01 0.49 1.30 16 10 O -0.40 -9.81 10.67 -148.98 -1.59 -11.40 16 11 C 0.06 1.58 6.45 72.01 0.46 2.05 16 12 C 0.12 3.58 1.88 45.08 0.08 3.66 16 13 H 0.08 2.66 7.58 -2.39 -0.02 2.65 16 14 N -0.71 -27.07 3.53 -442.10 -1.56 -28.63 16 15 C 0.53 26.73 7.79 87.66 0.68 27.42 16 16 O -0.58 -33.08 15.13 -3.04 -0.05 -33.13 16 17 C 0.01 0.59 5.46 29.10 0.16 0.75 16 18 C -0.54 -33.81 8.92 25.60 0.23 -33.59 16 19 H 0.06 3.68 6.75 -2.91 -0.02 3.66 16 20 C 0.01 0.43 5.46 84.66 0.46 0.89 16 21 N -0.93 -57.17 13.29 21.45 0.28 -56.89 16 22 Si 0.97 47.55 29.54 68.60 2.03 49.57 16 23 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 24 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 25 H -0.27 -13.26 7.11 99.48 0.71 -12.55 16 26 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 27 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.06 1.30 8.13 -2.39 -0.02 1.28 16 30 H 0.06 1.30 8.13 -2.39 -0.02 1.29 16 31 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.06 1.18 6.73 -2.38 -0.02 1.17 16 33 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.40 14.08 7.03 -92.71 -0.65 13.43 16 38 H 0.03 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.04 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -82.65 334.71 3.70 -78.95 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: 0.39 Total: 16.82 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: 4.39 Total: 11.98 kcal Atomic # 7 Polarization: -84.24 SS G_CDS: -1.28 Total: -85.52 kcal Atomic # 8 Polarization: -69.97 SS G_CDS: -1.83 Total: -71.80 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 2.03 Total: 49.57 kcal Total: -82.65 3.70 -78.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143205190.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.058 kcal (2) G-P(sol) polarization free energy of solvation -82.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds