Wall clock time and date at job start Tue Mar 31 2020 06:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34226 * 116.99718 * 2 1 4 4 O 1.20819 * 120.00248 * 0.02562 * 3 2 1 5 5 C 1.50707 * 119.99641 * 179.97438 * 3 2 1 6 6 N 1.46499 * 112.85082 * 25.33932 * 5 3 2 7 7 C 1.34777 * 119.99665 * 309.94247 * 6 5 3 8 8 O 1.21283 * 119.99990 * 359.71991 * 7 6 5 9 9 C 1.50698 * 119.99538 * 179.72653 * 7 6 5 10 10 C 1.52999 * 109.47004 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47303 * 179.97438 * 10 9 7 12 12 C 1.50698 * 109.47242 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00090 * 0.02562 * 12 11 10 14 14 C 1.37882 * 120.00151 * 180.02562 * 12 11 10 15 15 N 1.31511 * 119.99699 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99903 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47325 * 60.00275 * 16 14 12 18 18 H 1.48505 * 109.47031 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47222 * 299.99959 * 16 14 12 20 20 C 1.53780 * 113.61456 * 254.13804 * 5 3 2 21 21 C 1.54053 * 86.98517 * 219.98389 * 20 5 3 22 22 H 1.09004 * 113.69380 * 139.99429 * 21 20 5 23 23 O 1.42902 * 113.61290 * 270.88736 * 21 20 5 24 24 C 1.53781 * 87.07716 * 25.43137 * 21 20 5 25 25 H 1.09004 * 109.46999 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47035 * 299.99656 * 1 2 3 27 27 H 1.08995 * 109.47434 * 59.99363 * 1 2 3 28 28 H 0.97001 * 119.99790 * 129.65960 * 6 5 3 29 29 H 1.09003 * 109.47112 * 299.99065 * 9 7 6 30 30 H 1.08993 * 109.47916 * 59.99687 * 9 7 6 31 31 H 1.09000 * 109.47527 * 299.99994 * 10 9 7 32 32 H 1.09007 * 109.47302 * 59.99534 * 10 9 7 33 33 H 1.08995 * 109.47540 * 300.00020 * 11 10 9 34 34 H 1.09001 * 109.46719 * 60.00219 * 11 10 9 35 35 H 0.97004 * 119.99534 * 179.97438 * 15 14 12 36 36 H 1.09000 * 113.61428 * 334.48751 * 20 5 3 37 37 H 1.09006 * 113.60990 * 105.38963 * 20 5 3 38 38 H 0.96707 * 114.00030 * 277.49621 * 23 21 20 39 39 H 1.08998 * 113.61667 * 220.01907 * 24 21 20 40 40 H 1.09004 * 113.68770 * 89.13032 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 7 4.1985 0.0860 -0.5767 7 6 3.8332 -1.1419 -0.1581 8 8 2.9847 -1.2625 0.7001 9 6 4.4791 -2.3649 -0.7563 10 6 3.8898 -3.6205 -0.1104 11 6 4.5451 -4.8623 -0.7182 12 6 3.9651 -6.0989 -0.0816 13 1 3.2047 -6.0082 0.6801 14 6 4.4050 -7.3461 -0.4714 15 7 5.3312 -7.4565 -1.3985 16 14 3.6855 -8.8790 0.3173 17 1 2.2217 -8.9218 0.0710 18 1 4.3225 -10.0842 -0.2717 19 1 3.9407 -8.8495 1.7798 20 6 4.1608 1.6919 1.3561 21 6 5.1654 2.5470 0.5605 22 1 5.3688 3.5178 1.0126 23 8 6.3552 1.8434 0.1981 24 6 4.1140 2.5977 -0.5606 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 4.8771 0.1826 -1.2631 29 1 4.2920 -2.3863 -1.8300 30 1 5.5535 -2.3339 -0.5754 31 1 4.0772 -3.5990 0.9631 32 1 2.8153 -3.6518 -0.2910 33 1 4.3573 -4.8837 -1.7917 34 1 5.6196 -4.8311 -0.5378 35 1 5.6410 -8.3339 -1.6725 36 1 3.4780 2.2790 1.9703 37 1 4.6221 0.8690 1.9023 38 1 7.0202 1.8080 0.8993 39 1 4.5375 2.5057 -1.5608 40 1 3.4179 3.4317 -0.4708 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153062404.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:07 Heat of formation + Delta-G solvation = -151.353004 kcal Electronic energy + Delta-G solvation = -23258.835290 eV Core-core repulsion = 19653.741686 eV Total energy + Delta-G solvation = -3605.093604 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -41.39165 -39.38185 -38.58374 -36.36476 -35.29452 -34.09381 -32.80446 -31.87963 -28.43616 -27.62285 -26.34815 -25.62292 -23.73814 -21.75215 -20.90441 -19.70135 -19.40580 -18.16196 -17.61505 -16.98336 -16.50970 -16.36851 -15.91959 -15.69235 -15.05177 -14.64268 -14.39835 -14.13629 -13.63977 -13.39797 -13.18193 -13.00031 -12.63313 -12.43507 -12.21665 -11.95006 -11.80285 -11.59221 -11.28903 -11.12796 -10.76878 -10.68507 -10.62391 -10.57583 -10.50613 -10.12239 -9.62076 -9.52279 -9.20717 -9.01096 -8.97268 -8.28896 -5.94843 -3.96080 2.04610 2.77677 3.04555 3.12707 3.38018 3.41494 3.45226 3.61680 3.91789 4.26959 4.29953 4.51436 4.66441 4.95630 5.18365 5.25092 5.26035 5.26468 5.35912 5.41150 5.47727 5.54939 5.61666 5.64512 5.80134 5.81113 6.32150 6.42410 6.46117 6.78981 6.98972 7.21516 7.26353 7.65471 7.74896 7.75767 7.88425 8.06345 8.50202 8.57084 9.10921 9.67574 11.16656 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.022691 B = 0.003692 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.669682 B = 7581.922994 C = 8455.909078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.303 6.303 3 C 0.468 3.532 4 O -0.520 6.520 5 C 0.161 3.839 6 N -0.711 5.711 7 C 0.508 3.492 8 O -0.499 6.499 9 C -0.134 4.134 10 C -0.093 4.093 11 C 0.020 3.980 12 C -0.517 4.517 13 H 0.055 0.945 14 C 0.056 3.944 15 N -0.898 5.898 16 Si 0.892 3.108 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 C -0.162 4.162 21 C 0.087 3.913 22 H 0.080 0.920 23 O -0.545 6.545 24 C -0.117 4.117 25 H 0.101 0.899 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.409 0.591 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.015 0.985 34 H 0.015 0.985 35 H 0.260 0.740 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.386 0.614 39 H 0.093 0.907 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.573 22.769 1.938 22.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.217 6.217 3 C 0.311 3.689 4 O -0.410 6.410 5 C 0.071 3.929 6 N -0.367 5.367 7 C 0.296 3.704 8 O -0.372 6.372 9 C -0.174 4.174 10 C -0.131 4.131 11 C -0.017 4.017 12 C -0.556 4.556 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.538 5.538 16 Si 0.719 3.281 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.203 1.203 20 C -0.201 4.201 21 C 0.027 3.973 22 H 0.098 0.902 23 O -0.351 6.351 24 C -0.155 4.155 25 H 0.119 0.881 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.245 0.755 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.034 0.966 34 H 0.034 0.966 35 H 0.070 0.930 36 H 0.119 0.881 37 H 0.110 0.890 38 H 0.234 0.766 39 H 0.111 0.889 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.658 22.700 1.909 22.841 hybrid contribution -0.011 -0.752 0.562 0.938 sum -1.669 21.949 2.471 22.150 Atomic orbital electron populations 1.23283 0.78105 1.03741 1.01507 1.87138 1.21874 1.30872 1.81793 1.23780 0.91285 0.82142 0.71730 1.90622 1.66546 1.36842 1.46971 1.20927 0.85513 0.88445 0.97974 1.45809 1.43490 1.03660 1.43740 1.21293 0.82262 0.84105 0.82743 1.90709 1.30187 1.85835 1.30461 1.21798 1.01223 0.92768 1.01576 1.21425 0.99913 0.92285 0.99451 1.19127 0.95772 0.90793 0.95988 1.21239 1.21834 0.91050 1.21454 0.92674 1.25013 0.95162 0.99102 0.95194 1.69955 1.29609 1.23775 1.30419 0.86666 0.79345 0.82422 0.79617 1.20261 1.21355 1.20263 1.24110 0.99207 1.01337 0.95486 1.22613 0.84961 0.94258 0.95462 0.90184 1.86440 1.27416 1.77784 1.43487 1.23403 0.96706 0.95249 1.00099 0.88098 0.92378 0.92603 0.75452 0.89552 0.89413 0.92804 0.92691 0.96649 0.96647 0.93046 0.88105 0.88953 0.76617 0.88893 0.85982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 101.05 1.07 1.42 16 2 O -0.30 -4.88 6.29 -47.60 -0.30 -5.18 16 3 C 0.47 6.84 7.07 36.01 0.25 7.09 16 4 O -0.52 -7.96 15.79 -18.74 -0.30 -8.25 16 5 C 0.16 1.89 1.11 -132.16 -0.15 1.75 16 6 N -0.71 -8.75 4.76 -47.92 -0.23 -8.98 16 7 C 0.51 8.08 7.18 -10.99 -0.08 8.00 16 8 O -0.50 -9.50 12.50 -19.69 -0.25 -9.74 16 9 C -0.13 -2.22 5.70 -27.88 -0.16 -2.37 16 10 C -0.09 -1.99 4.44 -26.73 -0.12 -2.11 16 11 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 12 C -0.52 -14.98 9.11 -34.44 -0.31 -15.30 16 13 H 0.05 1.57 7.74 -52.49 -0.41 1.17 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -27.15 13.29 55.43 0.74 -26.42 16 16 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 20 C -0.16 -1.61 7.27 -25.78 -0.19 -1.79 16 21 C 0.09 0.64 5.28 -25.78 -0.14 0.50 16 22 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 23 O -0.55 -4.10 12.95 -35.23 -0.46 -4.55 16 24 C -0.12 -1.00 7.06 -25.92 -0.18 -1.18 16 25 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 26 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 27 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 28 H 0.41 4.18 8.47 -40.82 -0.35 3.83 16 29 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 30 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.05 1.20 8.10 -51.93 -0.42 0.78 16 32 H 0.05 1.23 8.10 -51.93 -0.42 0.81 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.10 0.94 8.09 -51.93 -0.42 0.52 16 37 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.39 1.51 9.12 45.56 0.42 1.92 16 39 H 0.09 0.72 8.11 -51.93 -0.42 0.30 16 40 H 0.12 1.00 7.38 -51.93 -0.38 0.61 16 LS Contribution 338.33 15.07 5.10 5.10 Total: -1.00 -35.38 338.33 -6.29 -41.67 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -5.34 Total: 1.41 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -0.24 Total: -2.07 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 0.51 Total: -35.39 kcal Atomic # 8 Polarization: -26.43 SS G_CDS: -1.30 Total: -27.73 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.38 -6.29 -41.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153062404.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.682 kcal (2) G-P(sol) polarization free energy of solvation -35.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds