Wall clock time and date at job start Tue Mar 31 2020 06:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34226 * 116.99718 * 2 1 4 4 O 1.20819 * 120.00248 * 0.02562 * 3 2 1 5 5 C 1.50707 * 119.99641 * 179.97438 * 3 2 1 6 6 N 1.46499 * 112.85082 * 25.33932 * 5 3 2 7 7 C 1.34777 * 119.99665 * 309.94247 * 6 5 3 8 8 O 1.21283 * 119.99990 * 359.71991 * 7 6 5 9 9 C 1.50698 * 119.99538 * 179.72653 * 7 6 5 10 10 C 1.52999 * 109.47004 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47303 * 179.97438 * 10 9 7 12 12 C 1.50698 * 109.47242 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00090 * 0.02562 * 12 11 10 14 14 C 1.37882 * 120.00151 * 180.02562 * 12 11 10 15 15 N 1.31511 * 119.99699 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99903 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47325 * 60.00275 * 16 14 12 18 18 H 1.48505 * 109.47031 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47222 * 299.99959 * 16 14 12 20 20 C 1.53780 * 113.61456 * 254.13804 * 5 3 2 21 21 C 1.54053 * 86.98517 * 219.98389 * 20 5 3 22 22 H 1.09004 * 113.69380 * 139.99429 * 21 20 5 23 23 O 1.42902 * 113.61290 * 270.88736 * 21 20 5 24 24 C 1.53781 * 87.07716 * 25.43137 * 21 20 5 25 25 H 1.09004 * 109.46999 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47035 * 299.99656 * 1 2 3 27 27 H 1.08995 * 109.47434 * 59.99363 * 1 2 3 28 28 H 0.97001 * 119.99790 * 129.65960 * 6 5 3 29 29 H 1.09003 * 109.47112 * 299.99065 * 9 7 6 30 30 H 1.08993 * 109.47916 * 59.99687 * 9 7 6 31 31 H 1.09000 * 109.47527 * 299.99994 * 10 9 7 32 32 H 1.09007 * 109.47302 * 59.99534 * 10 9 7 33 33 H 1.08995 * 109.47540 * 300.00020 * 11 10 9 34 34 H 1.09001 * 109.46719 * 60.00219 * 11 10 9 35 35 H 0.97004 * 119.99534 * 179.97438 * 15 14 12 36 36 H 1.09000 * 113.61428 * 334.48751 * 20 5 3 37 37 H 1.09006 * 113.60990 * 105.38963 * 20 5 3 38 38 H 0.96707 * 114.00030 * 277.49621 * 23 21 20 39 39 H 1.08998 * 113.61667 * 220.01907 * 24 21 20 40 40 H 1.09004 * 113.68770 * 89.13032 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 7 4.1985 0.0860 -0.5767 7 6 3.8332 -1.1419 -0.1581 8 8 2.9847 -1.2625 0.7001 9 6 4.4791 -2.3649 -0.7563 10 6 3.8898 -3.6205 -0.1104 11 6 4.5451 -4.8623 -0.7182 12 6 3.9651 -6.0989 -0.0816 13 1 3.2047 -6.0082 0.6801 14 6 4.4050 -7.3461 -0.4714 15 7 5.3312 -7.4565 -1.3985 16 14 3.6855 -8.8790 0.3173 17 1 2.2217 -8.9218 0.0710 18 1 4.3225 -10.0842 -0.2717 19 1 3.9407 -8.8495 1.7798 20 6 4.1608 1.6919 1.3561 21 6 5.1654 2.5470 0.5605 22 1 5.3688 3.5178 1.0126 23 8 6.3552 1.8434 0.1981 24 6 4.1140 2.5977 -0.5606 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 4.8771 0.1826 -1.2631 29 1 4.2920 -2.3863 -1.8300 30 1 5.5535 -2.3339 -0.5754 31 1 4.0772 -3.5990 0.9631 32 1 2.8153 -3.6518 -0.2910 33 1 4.3573 -4.8837 -1.7917 34 1 5.6196 -4.8311 -0.5378 35 1 5.6410 -8.3339 -1.6725 36 1 3.4780 2.2790 1.9703 37 1 4.6221 0.8690 1.9023 38 1 7.0202 1.8080 0.8993 39 1 4.5375 2.5057 -1.5608 40 1 3.4179 3.4317 -0.4708 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153062404.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:07 Heat of formation + Delta-G solvation = -177.068626 kcal Electronic energy + Delta-G solvation = -23259.950403 eV Core-core repulsion = 19653.741686 eV Total energy + Delta-G solvation = -3606.208717 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.36040 -40.47708 -39.62951 -37.44006 -36.22900 -35.87043 -34.08724 -33.60452 -29.89162 -28.99809 -27.07149 -26.71968 -25.51812 -22.87028 -22.25250 -21.17134 -20.35936 -19.09759 -18.72664 -18.31183 -17.88384 -17.45504 -17.26645 -16.67226 -16.48582 -16.38995 -15.35487 -15.26483 -14.83507 -14.69915 -14.34360 -14.18117 -13.89894 -13.65791 -13.52169 -13.25828 -13.05563 -12.91747 -12.57035 -12.47220 -12.44586 -12.32885 -11.91080 -11.77151 -11.53268 -11.49382 -11.37671 -11.22167 -10.84203 -10.55814 -10.51694 -10.06854 -8.17833 -6.27608 0.97542 1.40764 1.43572 1.51605 1.74554 1.86484 2.08318 2.43479 3.01229 3.15181 3.17841 3.48263 3.60865 3.80138 4.03237 4.18984 4.25687 4.27106 4.33363 4.38288 4.57028 4.63070 4.71680 4.79364 4.81883 4.87032 4.94605 5.03133 5.16395 5.24314 5.37157 5.45606 5.57770 5.79918 5.90375 6.30257 6.59117 6.66849 6.87974 6.91242 7.38439 7.41211 8.93556 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.022691 B = 0.003692 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.669682 B = 7581.922994 C = 8455.909078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.329 6.329 3 C 0.460 3.540 4 O -0.534 6.534 5 C 0.144 3.856 6 N -0.693 5.693 7 C 0.512 3.488 8 O -0.534 6.534 9 C -0.126 4.126 10 C -0.078 4.078 11 C 0.026 3.974 12 C -0.546 4.546 13 H 0.052 0.948 14 C 0.004 3.996 15 N -0.930 5.930 16 Si 0.960 3.040 17 H -0.270 1.270 18 H -0.279 1.279 19 H -0.269 1.269 20 C -0.164 4.164 21 C 0.105 3.895 22 H 0.113 0.887 23 O -0.558 6.558 24 C -0.109 4.109 25 H 0.107 0.893 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.421 0.579 29 H 0.101 0.899 30 H 0.106 0.894 31 H 0.041 0.959 32 H 0.040 0.960 33 H -0.001 1.001 34 H 0.000 1.000 35 H 0.264 0.736 36 H 0.104 0.896 37 H 0.076 0.924 38 H 0.402 0.598 39 H 0.104 0.896 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.004 23.886 2.066 23.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.243 6.243 3 C 0.304 3.696 4 O -0.424 6.424 5 C 0.055 3.945 6 N -0.349 5.349 7 C 0.300 3.700 8 O -0.410 6.410 9 C -0.166 4.166 10 C -0.116 4.116 11 C -0.011 4.011 12 C -0.584 4.584 13 H 0.070 0.930 14 C -0.194 4.194 15 N -0.570 5.570 16 Si 0.785 3.215 17 H -0.195 1.195 18 H -0.204 1.204 19 H -0.194 1.194 20 C -0.203 4.203 21 C 0.046 3.954 22 H 0.130 0.870 23 O -0.367 6.367 24 C -0.146 4.146 25 H 0.125 0.875 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.260 0.740 29 H 0.119 0.881 30 H 0.124 0.876 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.017 0.983 34 H 0.019 0.981 35 H 0.073 0.927 36 H 0.123 0.877 37 H 0.095 0.905 38 H 0.253 0.747 39 H 0.122 0.878 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.051 23.850 2.028 23.959 hybrid contribution -0.198 -1.084 0.511 1.214 sum -1.249 22.767 2.538 22.942 Atomic orbital electron populations 1.23426 0.77096 1.04448 1.02163 1.87122 1.23238 1.31965 1.81936 1.24392 0.92470 0.81591 0.71160 1.90598 1.67129 1.36962 1.47716 1.21393 0.83765 0.89267 1.00081 1.45517 1.43080 1.02922 1.43346 1.21007 0.81768 0.84927 0.82312 1.90704 1.31776 1.86439 1.32110 1.21616 1.01945 0.91064 1.01947 1.21116 0.98826 0.92925 0.98711 1.19019 0.94969 0.92175 0.94980 1.21667 1.22212 0.92698 1.21869 0.93019 1.25893 0.95421 1.02481 0.95626 1.70064 1.30623 1.24819 1.31490 0.85576 0.78779 0.78264 0.78884 1.19468 1.20440 1.19412 1.24183 1.00036 1.01457 0.94620 1.22548 0.84270 0.94816 0.93815 0.86987 1.86397 1.27725 1.77948 1.44628 1.23454 0.96917 0.93112 1.01132 0.87466 0.92014 0.91641 0.73990 0.88068 0.87611 0.93995 0.94098 0.98299 0.98147 0.92709 0.87722 0.90487 0.74710 0.87801 0.85373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 10.56 113.37 1.20 1.78 16 2 O -0.33 -10.63 6.29 -43.39 -0.27 -10.90 16 3 C 0.46 13.21 7.07 71.24 0.50 13.71 16 4 O -0.53 -15.97 15.79 21.98 0.35 -15.62 16 5 C 0.14 3.19 1.11 3.39 0.00 3.19 16 6 N -0.69 -16.06 4.76 -423.91 -2.02 -18.07 16 7 C 0.51 16.01 7.18 87.66 0.63 16.64 16 8 O -0.53 -20.53 12.50 21.10 0.26 -20.26 16 9 C -0.13 -4.10 5.70 29.85 0.17 -3.93 16 10 C -0.08 -3.39 4.44 30.59 0.14 -3.26 16 11 C 0.03 1.36 4.97 29.85 0.15 1.51 16 12 C -0.55 -32.14 9.11 25.60 0.23 -31.90 16 13 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 14 C 0.00 0.22 5.46 84.66 0.46 0.68 16 15 N -0.93 -56.59 13.29 21.45 0.28 -56.31 16 16 Si 0.96 45.16 29.54 68.60 2.03 47.18 16 17 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 18 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 19 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 20 C -0.16 -2.98 7.27 31.21 0.23 -2.75 16 21 C 0.11 1.21 5.28 31.21 0.16 1.38 16 22 H 0.11 0.68 8.14 -2.38 -0.02 0.66 16 23 O -0.56 -6.64 12.95 -148.98 -1.93 -8.57 16 24 C -0.11 -1.57 7.06 31.12 0.22 -1.35 16 25 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 26 H 0.06 1.50 8.13 -2.39 -0.02 1.48 16 27 H 0.06 1.51 8.13 -2.39 -0.02 1.50 16 28 H 0.42 7.67 8.47 -92.71 -0.79 6.89 16 29 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 30 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 31 H 0.04 1.90 8.10 -2.39 -0.02 1.88 16 32 H 0.04 1.87 8.10 -2.38 -0.02 1.85 16 33 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 34 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 35 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 36 H 0.10 1.81 8.09 -2.39 -0.02 1.79 16 37 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 38 H 0.40 1.91 9.12 -74.05 -0.68 1.24 16 39 H 0.10 1.29 8.11 -2.39 -0.02 1.27 16 40 H 0.13 1.75 7.38 -2.38 -0.02 1.73 16 Total: -1.00 -76.68 338.33 2.39 -74.28 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -0.40 Total: 12.58 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: 4.09 Total: -4.30 kcal Atomic # 7 Polarization: -72.65 SS G_CDS: -1.73 Total: -74.38 kcal Atomic # 8 Polarization: -53.77 SS G_CDS: -1.59 Total: -55.36 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Total: -76.68 2.39 -74.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153062404.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.784 kcal (2) G-P(sol) polarization free energy of solvation -76.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds